Wall clock time and date at job start Sun Mar 29 2020 22:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35306 * 128.04364 * 2 1 4 4 O 1.34006 * 106.67831 * 180.24399 * 3 2 1 5 5 N 1.20912 * 111.85921 * 359.74637 * 4 3 2 6 6 C 1.31014 * 111.42543 * 0.02562 * 5 4 3 7 7 C 1.48244 * 126.94108 * 179.97438 * 6 5 4 8 8 O 1.21408 * 120.00368 * 180.02562 * 7 6 5 9 9 O 1.34649 * 119.99914 * 0.02562 * 7 6 5 10 10 C 1.45200 * 117.00198 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46620 * 30.00241 * 10 9 7 12 12 C 1.50701 * 109.47024 * 149.99806 * 10 9 7 13 13 H 1.07999 * 120.00531 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99645 * 179.97438 * 12 10 9 15 15 N 1.31511 * 119.99763 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99682 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46619 * 120.00442 * 16 14 12 19 19 H 1.48496 * 109.47411 * 240.00046 * 16 14 12 20 20 C 1.52996 * 109.47367 * 270.00382 * 10 9 7 21 21 C 1.53002 * 117.49888 * 356.25163 * 20 10 9 22 22 C 1.53000 * 117.50107 * 64.90925 * 20 10 9 23 23 H 1.09007 * 109.46856 * 270.15899 * 1 2 3 24 24 H 1.09000 * 109.47219 * 30.15529 * 1 2 3 25 25 H 1.08994 * 109.47346 * 150.15615 * 1 2 3 26 26 H 1.08002 * 126.65917 * 359.97438 * 3 2 1 27 27 H 0.97007 * 119.99127 * 179.97438 * 15 14 12 28 28 H 1.09002 * 115.54951 * 210.58137 * 20 10 9 29 29 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 30 30 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 31 31 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 32 32 H 1.08999 * 117.49942 * 144.97366 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5888 0.5774 -0.0055 5 7 3.5993 -0.6317 -0.0037 6 6 2.3839 -1.1208 0.0025 7 6 1.9996 -2.5525 0.0059 8 8 0.8269 -2.8664 0.0112 9 8 2.9514 -3.5050 0.0030 10 6 2.5023 -4.8858 0.0059 11 1 1.5415 -4.9564 -0.5041 12 6 3.5142 -5.7447 -0.7078 13 1 4.4059 -5.2977 -1.1218 14 6 3.3021 -7.1015 -0.8312 15 7 2.2165 -7.6459 -0.3266 16 14 4.5567 -8.1663 -1.7152 17 1 5.6811 -7.3184 -2.1867 18 1 5.0738 -9.1997 -0.7824 19 1 3.9130 -8.8274 -2.8787 20 6 2.3501 -5.3695 1.4494 21 6 2.7609 -4.4058 2.5645 22 6 1.2796 -4.6966 2.3109 23 1 -0.3633 0.0029 1.0277 24 1 -0.3634 0.8886 -0.5162 25 1 -0.3634 -0.8913 -0.5114 26 1 2.0559 2.1073 -0.0004 27 1 2.0672 -8.6004 -0.4138 28 1 2.5311 -6.4322 1.6106 29 1 3.2123 -4.8344 3.4593 30 1 3.1391 -3.4269 2.2696 31 1 0.6840 -3.9089 1.8493 32 1 0.7561 -5.3167 3.0386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350302431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:34 Heat of formation + Delta-G solvation = 2.052416 kcal Electronic energy + Delta-G solvation = -18535.704867 eV Core-core repulsion = 15466.106189 eV Total energy + Delta-G solvation = -3069.598677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.08133 -39.75727 -36.67308 -34.90406 -34.58779 -32.86329 -32.30469 -28.37469 -27.93667 -25.03367 -23.18915 -21.64738 -21.48917 -20.85160 -19.17279 -18.02889 -17.78191 -16.77455 -16.55246 -15.80760 -15.38160 -14.60158 -14.16552 -13.92347 -13.38022 -13.30118 -12.98597 -12.48644 -12.37892 -11.75109 -11.46862 -11.31695 -11.11141 -10.99958 -10.66981 -10.34910 -10.20021 -10.08126 -10.03972 -9.53434 -9.48254 -9.20300 -8.58533 -8.49042 -6.22171 -4.29324 1.22355 1.64303 2.99988 3.22711 3.25648 3.31047 3.33948 3.39249 4.13693 4.31189 4.73736 4.86216 4.97013 5.09811 5.10369 5.54070 5.58911 5.72199 5.76773 5.81675 6.04595 6.09483 6.19894 6.43091 6.62090 6.75435 6.97486 7.11697 7.45057 7.52000 7.74945 8.02967 8.07056 8.47051 8.81389 9.35054 10.85128 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.006364 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.135793 B = 4398.396729 C = 4777.180951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.149 4.149 3 C -0.077 4.077 4 O 0.128 5.872 5 N -0.304 5.304 6 C -0.010 4.010 7 C 0.537 3.463 8 O -0.494 6.494 9 O -0.333 6.333 10 C 0.248 3.752 11 H 0.055 0.945 12 C -0.519 4.519 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.114 4.114 21 C -0.196 4.196 22 C -0.207 4.207 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.223 0.777 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 14.850 1.940 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.153 4.153 3 C -0.158 4.158 4 O 0.048 5.952 5 N -0.002 5.002 6 C -0.167 4.167 7 C 0.378 3.622 8 O -0.382 6.382 9 O -0.248 6.248 10 C 0.195 3.805 11 H 0.073 0.927 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.133 4.133 21 C -0.233 4.233 22 C -0.244 4.244 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.239 0.761 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.378 13.836 1.954 14.041 hybrid contribution -0.327 -0.502 -0.259 0.653 sum -1.705 13.334 1.694 13.549 Atomic orbital electron populations 1.20242 0.86505 1.03959 1.03282 1.21359 0.99121 0.89933 1.04936 1.25735 0.82635 1.01137 1.06259 1.84831 1.29411 1.15547 1.65366 1.74383 1.21464 0.90824 1.13526 1.22711 0.89508 0.95091 1.09400 1.19481 0.84574 0.84429 0.73694 1.90751 1.19176 1.82350 1.45940 1.86642 1.37811 1.19538 1.80792 1.20308 0.97684 0.70393 0.92078 0.92721 1.20987 1.06885 0.91799 1.36029 0.90984 1.24905 0.96037 0.97369 0.95504 1.70007 1.25490 1.12333 1.44313 0.86228 0.80917 0.79914 0.79194 1.19385 1.20639 1.20684 1.23015 0.99033 0.99421 0.91833 1.22815 0.97701 1.01570 1.01244 1.23148 0.91589 1.04751 1.04870 0.90465 0.90990 0.89294 0.76060 0.92388 0.85272 0.90189 0.90133 0.88797 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.15 -2.01 6.34 -104.11 -0.66 -2.67 16 3 C -0.08 -0.77 12.24 29.69 0.36 -0.41 16 4 O 0.13 1.70 11.18 17.27 0.19 1.89 16 5 N -0.30 -5.33 12.12 33.29 0.40 -4.93 16 6 C -0.01 -0.18 7.24 -82.54 -0.60 -0.77 16 7 C 0.54 11.84 6.84 34.84 0.24 12.08 16 8 O -0.49 -11.25 12.33 -19.20 -0.24 -11.49 16 9 O -0.33 -8.31 8.49 -40.35 -0.34 -8.65 16 10 C 0.25 6.66 2.39 -27.88 -0.07 6.59 16 11 H 0.06 1.61 7.16 -51.93 -0.37 1.23 16 12 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 13 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 14 C 0.06 1.77 5.16 -17.82 -0.09 1.68 16 15 N -0.88 -24.91 11.66 55.43 0.65 -24.26 16 16 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.11 -2.87 5.23 -90.62 -0.47 -3.34 16 21 C -0.20 -4.29 9.74 -26.69 -0.26 -4.55 16 22 C -0.21 -4.57 9.87 -26.70 -0.26 -4.83 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.21 6.89 -51.93 -0.36 0.86 16 26 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.13 3.50 6.54 -51.93 -0.34 3.16 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 31 H 0.09 2.13 5.55 -51.92 -0.29 1.84 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -31.21 280.16 -5.26 -36.47 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.36 Total: 2.40 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.76 Total: -11.78 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 1.05 Total: -29.19 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.39 Total: -18.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.21 -5.26 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350302431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.518 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds