Wall clock time and date at job start Sun Mar 29 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35306 * 128.04364 * 2 1 4 4 O 1.34006 * 106.67831 * 180.24399 * 3 2 1 5 5 N 1.20912 * 111.85921 * 359.74637 * 4 3 2 6 6 C 1.31014 * 111.42543 * 0.02562 * 5 4 3 7 7 C 1.48244 * 126.94108 * 179.97438 * 6 5 4 8 8 O 1.21408 * 120.00368 * 180.02562 * 7 6 5 9 9 O 1.34649 * 119.99914 * 0.02562 * 7 6 5 10 10 C 1.45200 * 117.00198 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46620 * 30.00241 * 10 9 7 12 12 C 1.50701 * 109.47024 * 149.99806 * 10 9 7 13 13 H 1.07999 * 120.00531 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99645 * 179.97438 * 12 10 9 15 15 N 1.31511 * 119.99763 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99682 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46619 * 120.00442 * 16 14 12 19 19 H 1.48496 * 109.47411 * 240.00046 * 16 14 12 20 20 C 1.52996 * 109.47367 * 270.00382 * 10 9 7 21 21 C 1.53002 * 117.49888 * 356.25163 * 20 10 9 22 22 C 1.53000 * 117.50107 * 64.90925 * 20 10 9 23 23 H 1.09007 * 109.46856 * 270.15899 * 1 2 3 24 24 H 1.09000 * 109.47219 * 30.15529 * 1 2 3 25 25 H 1.08994 * 109.47346 * 150.15615 * 1 2 3 26 26 H 1.08002 * 126.65917 * 359.97438 * 3 2 1 27 27 H 0.97007 * 119.99127 * 179.97438 * 15 14 12 28 28 H 1.09002 * 115.54951 * 210.58137 * 20 10 9 29 29 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 30 30 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 31 31 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 32 32 H 1.08999 * 117.49942 * 144.97366 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5888 0.5774 -0.0055 5 7 3.5993 -0.6317 -0.0037 6 6 2.3839 -1.1208 0.0025 7 6 1.9996 -2.5525 0.0059 8 8 0.8269 -2.8664 0.0112 9 8 2.9514 -3.5050 0.0030 10 6 2.5023 -4.8858 0.0059 11 1 1.5415 -4.9564 -0.5041 12 6 3.5142 -5.7447 -0.7078 13 1 4.4059 -5.2977 -1.1218 14 6 3.3021 -7.1015 -0.8312 15 7 2.2165 -7.6459 -0.3266 16 14 4.5567 -8.1663 -1.7152 17 1 5.6811 -7.3184 -2.1867 18 1 5.0738 -9.1997 -0.7824 19 1 3.9130 -8.8274 -2.8787 20 6 2.3501 -5.3695 1.4494 21 6 2.7609 -4.4058 2.5645 22 6 1.2796 -4.6966 2.3109 23 1 -0.3633 0.0029 1.0277 24 1 -0.3634 0.8886 -0.5162 25 1 -0.3634 -0.8913 -0.5114 26 1 2.0559 2.1073 -0.0004 27 1 2.0672 -8.6004 -0.4138 28 1 2.5311 -6.4322 1.6106 29 1 3.2123 -4.8344 3.4593 30 1 3.1391 -3.4269 2.2696 31 1 0.6840 -3.9089 1.8493 32 1 0.7561 -5.3167 3.0386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350302431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:33 Heat of formation + Delta-G solvation = -17.317437 kcal Electronic energy + Delta-G solvation = -18536.544806 eV Core-core repulsion = 15466.106189 eV Total energy + Delta-G solvation = -3070.438617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.27632 -41.56409 -38.48501 -36.71513 -35.78411 -34.95911 -33.48529 -30.16228 -29.18170 -26.61768 -25.13297 -23.30329 -22.72030 -22.40724 -21.02468 -19.49512 -19.02148 -18.68962 -18.17515 -17.58070 -17.20732 -16.45674 -15.74105 -15.22958 -14.82971 -14.42872 -14.29397 -14.13396 -13.74084 -13.43042 -13.31809 -13.10055 -12.85955 -12.47336 -12.43754 -12.32588 -12.01007 -11.78151 -11.44403 -11.43887 -11.17013 -10.57119 -10.53822 -10.44701 -8.33341 -6.50438 -0.08720 0.66275 1.36975 1.38789 1.48789 1.60246 1.76137 2.28891 2.36792 2.89300 2.95509 3.06507 3.57309 3.88464 3.96849 4.02047 4.15916 4.19348 4.37688 4.65073 4.70693 4.77309 4.82172 4.86808 4.93432 5.12797 5.20200 5.30327 5.40242 5.48217 5.70053 5.97282 6.48114 6.71438 7.05968 7.19393 8.74516 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.006364 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.135793 B = 4398.396729 C = 4777.180951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.164 4.164 3 C -0.031 4.031 4 O 0.152 5.848 5 N -0.339 5.339 6 C -0.055 4.055 7 C 0.530 3.470 8 O -0.512 6.512 9 O -0.350 6.350 10 C 0.254 3.746 11 H 0.014 0.986 12 C -0.551 4.551 13 H 0.061 0.939 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.980 3.020 17 H -0.268 1.268 18 H -0.268 1.268 19 H -0.272 1.272 20 C -0.143 4.143 21 C -0.173 4.173 22 C -0.191 4.191 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.291 0.709 27 H 0.272 0.728 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 17.083 2.401 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C -0.111 4.111 4 O 0.067 5.933 5 N -0.033 5.033 6 C -0.208 4.208 7 C 0.374 3.626 8 O -0.401 6.401 9 O -0.266 6.266 10 C 0.202 3.798 11 H 0.032 0.968 12 C -0.588 4.588 13 H 0.079 0.921 14 C -0.178 4.178 15 N -0.545 5.545 16 Si 0.803 3.197 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.162 4.162 21 C -0.210 4.210 22 C -0.228 4.228 23 H 0.102 0.898 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.306 0.694 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.038 16.039 2.422 16.254 hybrid contribution -0.481 -1.017 -0.415 1.199 sum -1.519 15.022 2.007 15.232 Atomic orbital electron populations 1.20288 0.85155 1.04337 1.03872 1.21720 1.00213 0.89083 1.05932 1.26848 0.79952 1.02705 1.01593 1.84786 1.31168 1.13875 1.63454 1.74391 1.21609 0.92658 1.14658 1.22585 0.91469 0.93640 1.13152 1.20115 0.84067 0.85682 0.72777 1.90717 1.19603 1.83029 1.46711 1.86615 1.39017 1.19268 1.81656 1.19919 0.95360 0.71694 0.92872 0.96830 1.21217 1.07081 0.92986 1.37550 0.92100 1.25777 0.97954 0.98230 0.95812 1.70110 1.26890 1.12905 1.44633 0.85181 0.78281 0.77984 0.78250 1.19229 1.19344 1.19718 1.22719 1.02792 0.98791 0.91853 1.22840 0.97430 1.00262 1.00439 1.23146 0.91731 1.03995 1.03954 0.89780 0.86691 0.92734 0.69418 0.91871 0.87437 0.87440 0.90710 0.89646 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.01 71.24 0.71 -0.92 16 2 C -0.16 -4.07 6.34 -19.53 -0.12 -4.20 16 3 C -0.03 -0.47 12.24 67.14 0.82 0.35 16 4 O 0.15 3.60 11.18 71.96 0.80 4.40 16 5 N -0.34 -11.73 12.12 -49.53 -0.60 -12.33 16 6 C -0.05 -2.01 7.24 42.94 0.31 -1.69 16 7 C 0.53 24.61 6.84 70.48 0.48 25.09 16 8 O -0.51 -24.72 12.33 20.13 0.25 -24.47 16 9 O -0.35 -18.48 8.49 -55.58 -0.47 -18.96 16 10 C 0.25 14.50 2.39 29.85 0.07 14.57 16 11 H 0.01 0.88 7.16 -2.39 -0.02 0.87 16 12 C -0.55 -32.67 8.90 25.60 0.23 -32.44 16 13 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 14 C 0.02 1.30 5.16 84.66 0.44 1.73 16 15 N -0.91 -52.66 11.66 21.45 0.25 -52.41 16 16 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C -0.14 -7.43 5.23 -10.79 -0.06 -7.49 16 21 C -0.17 -7.57 9.74 30.62 0.30 -7.27 16 22 C -0.19 -8.57 9.87 30.62 0.30 -8.26 16 23 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.50 6.89 -2.39 -0.02 1.49 16 26 H 0.29 0.20 8.06 -2.91 -0.02 0.18 16 27 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 28 H 0.11 6.05 6.54 -2.39 -0.02 6.03 16 29 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.07 3.36 6.67 -2.39 -0.02 3.35 16 31 H 0.09 3.98 5.55 -2.38 -0.01 3.96 16 32 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 Total: -1.00 -73.85 280.16 6.89 -66.96 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.15 Total: 11.30 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.48 Total: -20.52 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -0.35 Total: -64.75 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: 0.58 Total: -39.03 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -73.85 6.89 -66.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350302431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.644 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds