Wall clock time and date at job start Mon Mar 30 2020 00:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86795 * 120.00151 * 2 1 4 4 H 1.48493 * 109.47451 * 95.00649 * 3 2 1 5 5 H 1.48500 * 109.47433 * 215.01122 * 3 2 1 6 6 H 1.48501 * 109.46856 * 335.00912 * 3 2 1 7 7 C 1.40162 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 173.74229 * 7 2 1 9 9 C 1.41535 * 120.00244 * 353.73737 * 7 2 1 10 10 O 1.21812 * 119.99676 * 6.25174 * 9 7 2 11 11 N 1.34774 * 120.00248 * 186.24767 * 9 7 2 12 12 C 1.38589 * 119.99999 * 180.02562 * 11 9 7 13 13 C 1.36673 * 126.31568 * 359.68253 * 12 11 9 14 14 C 1.39466 * 107.84350 * 179.90766 * 13 12 11 15 15 N 1.30995 * 108.53550 * 0.36824 * 14 13 12 16 16 N 1.36059 * 126.31615 * 180.02562 * 12 11 9 17 17 C 1.46498 * 126.12124 * 359.97438 * 16 12 11 18 18 H 1.09003 * 110.43259 * 1.09327 * 17 16 12 19 19 C 1.54803 * 110.48914 * 123.77980 * 17 16 12 20 20 C 1.54991 * 102.09342 * 97.80000 * 19 17 16 21 21 O 1.44382 * 103.49000 * 37.02170 * 20 19 17 22 22 C 1.43742 * 106.97601 * 319.94026 * 21 20 19 23 23 H 0.96995 * 120.00086 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99713 * 359.97438 * 11 9 7 25 25 H 1.08001 * 126.07791 * 0.02562 * 13 12 11 26 26 H 1.07999 * 125.73349 * 180.10454 * 14 13 12 27 27 H 1.09010 * 110.90713 * 215.99388 * 19 17 16 28 28 H 1.08996 * 110.90811 * 339.59557 * 19 17 16 29 29 H 1.09001 * 110.61858 * 278.52455 * 20 19 17 30 30 H 1.09001 * 110.75576 * 155.58690 * 20 19 17 31 31 H 1.08998 * 109.88091 * 267.09100 * 22 21 20 32 32 H 1.09004 * 109.87989 * 145.93972 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.5935 1.9853 1.3946 5 1 3.4808 1.4730 -0.8033 6 1 1.3887 2.6808 -0.5915 7 6 2.0070 -1.2138 0.0005 8 1 3.0822 -1.2167 -0.1014 9 6 1.3057 -2.4359 0.1348 10 8 0.0876 -2.4421 0.1353 11 7 1.9856 -3.5926 0.2619 12 6 1.2988 -4.7892 0.3929 13 6 -0.0588 -4.9451 0.4155 14 6 -0.3305 -6.3054 0.5599 15 7 0.8066 -6.9519 0.6308 16 7 1.8518 -6.0249 0.5291 17 6 3.2840 -6.3311 0.5634 18 1 3.8708 -5.4161 0.4826 19 6 3.6437 -7.0960 1.8604 20 6 3.6538 -8.5685 1.3767 21 8 4.2126 -8.4828 0.0482 22 6 3.6535 -7.3105 -0.5675 23 1 -0.4850 0.8400 -0.0004 24 1 2.9556 -3.5876 0.2611 25 1 -0.7910 -4.1554 0.3339 26 1 -1.3132 -6.7505 0.6097 27 1 4.6269 -6.8001 2.2265 28 1 2.8829 -6.9431 2.6258 29 1 2.6402 -8.9680 1.3417 30 1 4.2849 -9.1820 2.0198 31 1 2.7604 -7.5785 -1.1321 32 1 4.3890 -6.8525 -1.2289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351849165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:27 Heat of formation + Delta-G solvation = 4.063536 kcal Electronic energy + Delta-G solvation = -18356.278324 eV Core-core repulsion = 15319.059607 eV Total energy + Delta-G solvation = -3037.218717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76998 -38.99202 -37.56472 -33.76893 -33.23011 -32.43186 -30.05568 -28.62959 -28.07537 -26.38916 -23.04573 -22.22844 -21.64239 -19.89940 -19.09456 -17.87244 -16.85129 -16.33885 -15.63331 -15.58002 -15.11033 -14.44026 -14.19793 -13.89128 -13.39098 -13.08761 -12.76587 -12.69530 -12.33150 -11.77728 -11.62321 -11.48252 -11.31878 -11.24074 -11.20384 -10.76454 -10.46906 -9.97780 -9.81829 -9.67950 -9.02953 -8.28596 -7.80644 -7.02817 -6.49902 -5.02874 2.54677 2.76110 2.99980 3.07036 3.09739 3.68269 3.84403 3.91607 4.32548 4.35333 4.46660 4.60082 4.79470 5.01226 5.19252 5.51701 5.59607 5.63713 5.65407 5.70283 5.82253 5.89168 6.19628 6.45675 6.71322 6.99798 7.06175 7.15542 7.58293 7.67546 7.92084 8.08178 8.42331 8.68507 9.12757 10.25519 10.44335 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.005577 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.055476 B = 5019.011739 C = 5617.789373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.089 3.911 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.548 3.452 10 O -0.550 6.550 11 N -0.672 5.672 12 C 0.346 3.654 13 C -0.305 4.305 14 C 0.059 3.941 15 N -0.327 5.327 16 N -0.404 5.404 17 C 0.135 3.865 18 H 0.107 0.893 19 C -0.159 4.159 20 C 0.051 3.949 21 O -0.377 6.377 22 C 0.044 3.956 23 H 0.275 0.725 24 H 0.388 0.612 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -8.803 2.040 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.357 3.643 10 O -0.431 6.431 11 N -0.319 5.319 12 C 0.124 3.876 13 C -0.337 4.337 14 C -0.126 4.126 15 N -0.150 5.150 16 N -0.196 5.196 17 C 0.031 3.969 18 H 0.125 0.875 19 C -0.197 4.197 20 C -0.025 4.025 21 O -0.296 6.296 22 C -0.034 4.034 23 H 0.086 0.914 24 H 0.221 0.779 25 H 0.191 0.809 26 H 0.191 0.809 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.925 -9.877 2.044 12.235 hybrid contribution 0.500 1.793 0.030 1.861 sum 7.425 -8.085 2.074 11.171 Atomic orbital electron populations 1.69983 1.07330 1.28264 1.31460 1.25746 0.94679 1.00718 0.92364 0.86242 0.80060 0.80441 0.79294 1.19346 1.18718 1.20158 1.19883 0.94871 0.89768 1.52631 0.91037 1.16999 0.87617 0.81183 0.78509 1.90594 1.13396 1.84356 1.54793 1.43873 1.09141 1.03743 1.75109 1.18693 0.91776 0.80444 0.96644 1.21793 0.93696 0.96989 1.21229 1.23621 0.96727 0.93602 0.98687 1.77214 0.94006 1.13753 1.30025 1.48709 1.04649 1.03314 1.62901 1.22340 0.78197 1.00097 0.96302 0.87471 1.23426 1.02999 0.96001 0.97284 1.23554 0.99621 0.95941 0.83408 1.88843 1.67621 1.44816 1.28304 1.23523 0.99494 0.85476 0.94863 0.91358 0.77945 0.80904 0.80910 0.89419 0.89163 0.90972 0.89093 0.90877 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.63 11.75 55.56 0.65 -19.98 16 2 C 0.09 2.28 5.49 -17.35 -0.10 2.19 16 3 Si 0.92 18.54 29.56 -169.99 -5.03 13.51 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.54 -13.94 9.29 -37.60 -0.35 -14.29 16 8 H 0.07 1.67 7.86 -52.48 -0.41 1.26 16 9 C 0.55 14.67 7.52 -15.00 -0.11 14.56 16 10 O -0.55 -16.58 12.01 5.09 0.06 -16.51 16 11 N -0.67 -14.71 5.37 -13.99 -0.08 -14.78 16 12 C 0.35 7.40 7.68 -153.10 -1.18 6.23 16 13 C -0.30 -6.80 9.65 -39.69 -0.38 -7.18 16 14 C 0.06 1.10 11.99 -17.45 -0.21 0.89 16 15 N -0.33 -6.08 12.32 30.57 0.38 -5.71 16 16 N -0.40 -7.31 3.26 -52.32 -0.17 -7.48 16 17 C 0.13 1.91 3.91 -66.41 -0.26 1.65 16 18 H 0.11 1.34 6.91 -51.93 -0.36 0.99 16 19 C -0.16 -1.94 6.80 -24.73 -0.17 -2.10 16 20 C 0.05 0.62 7.72 38.21 0.29 0.91 16 21 O -0.38 -5.26 11.52 -35.23 -0.41 -5.67 16 22 C 0.04 0.60 7.46 37.73 0.28 0.88 16 23 H 0.28 6.89 8.29 -40.82 -0.34 6.55 16 24 H 0.39 7.10 7.55 -40.82 -0.31 6.79 16 25 H 0.17 4.38 5.82 -52.49 -0.31 4.07 16 26 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 27 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.13 7.83 -51.93 -0.41 0.73 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 277.57 15.07 4.18 4.18 Total: -1.00 -32.02 277.57 -6.04 -38.06 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.46 Total: 10.64 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.18 Total: 3.73 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.78 Total: -47.95 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.34 Total: -22.18 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.02 -6.04 -38.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351849165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.127 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds