Wall clock time and date at job start Sun Mar 29 2020 23:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47150 * 2 1 4 4 C 1.50699 * 109.46600 * 119.99757 * 2 1 3 5 5 H 1.08002 * 120.00184 * 120.00831 * 4 2 1 6 6 C 1.37875 * 120.00119 * 299.99876 * 4 2 1 7 7 N 1.31522 * 120.00011 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00106 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47271 * 89.99948 * 8 6 4 10 10 H 1.48504 * 109.47361 * 210.00172 * 8 6 4 11 11 H 1.48499 * 109.47005 * 329.99648 * 8 6 4 12 12 C 1.50705 * 109.47297 * 239.99576 * 2 1 3 13 13 O 1.21296 * 119.99934 * 240.00200 * 12 2 1 14 14 N 1.34778 * 119.99554 * 60.00368 * 12 2 1 15 15 C 1.40302 * 119.99424 * 175.83998 * 14 12 2 16 16 C 1.38702 * 120.03492 * 34.62452 * 15 14 12 17 17 C 1.38174 * 120.03700 * 179.77053 * 16 15 14 18 18 C 1.38738 * 120.10352 * 0.50065 * 17 16 15 19 19 O 1.35968 * 119.96677 * 179.72561 * 18 17 16 20 20 C 1.38679 * 120.07348 * 359.75122 * 18 17 16 21 21 C 1.38514 * 119.95433 * 359.97438 * 20 18 17 22 22 O 1.35973 * 120.04797 * 180.02562 * 21 20 18 23 23 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47230 * 299.99973 * 1 2 3 25 25 H 1.09002 * 109.46706 * 60.00383 * 1 2 3 26 26 H 0.96994 * 120.00032 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00149 * 355.55815 * 14 12 2 28 28 H 1.07997 * 119.98613 * 359.97438 * 16 15 14 29 29 H 1.07998 * 119.94945 * 180.25000 * 17 16 15 30 30 H 0.96701 * 113.99927 * 270.02970 * 19 18 17 31 31 H 1.07996 * 120.01772 * 180.02562 * 20 18 17 32 32 H 0.96698 * 114.00262 * 269.97750 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8590 3.5566 8 14 0.6247 1.2791 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8471 2.1766 1.4920 12 6 2.0325 -0.7105 -1.2304 13 8 2.7298 -1.6967 -1.1190 14 7 1.7069 -0.2500 -2.4545 15 6 2.2449 -0.8582 -3.5987 16 6 2.4758 -2.2258 -3.6144 17 6 3.0012 -2.8256 -4.7429 18 6 3.3087 -2.0603 -5.8585 19 8 3.8308 -2.6526 -6.9655 20 6 3.0845 -0.6918 -5.8458 21 6 2.5526 -0.0886 -4.7181 22 8 2.3316 1.2530 -4.7037 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9032 -0.5278 4.4376 27 1 1.0975 0.4992 -2.5446 28 1 2.2417 -2.8228 -2.7454 29 1 3.1766 -3.8912 -4.7550 30 1 4.7970 -2.6934 -6.9710 31 1 3.3238 -0.0970 -6.7149 32 1 3.0826 1.7720 -4.3848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558155708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:42 Heat of formation + Delta-G solvation = -88.835295 kcal Electronic energy + Delta-G solvation = -18076.087178 eV Core-core repulsion = 15002.547314 eV Total energy + Delta-G solvation = -3073.539864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53325 -38.93237 -37.79963 -35.78246 -34.02337 -33.79380 -31.34184 -30.11083 -28.20583 -25.23402 -23.72509 -22.88913 -21.81251 -19.58113 -19.04484 -17.66801 -17.10258 -16.89009 -16.25221 -15.74668 -15.39682 -14.81113 -14.39533 -14.36686 -13.73716 -13.34913 -13.16077 -12.87593 -12.46652 -12.31405 -12.02565 -11.68398 -11.14602 -11.00609 -10.78236 -10.67600 -10.39975 -9.88630 -9.71583 -9.20274 -8.96289 -8.73404 -8.65025 -7.81227 -6.12535 -4.14136 1.12000 1.26347 3.16218 3.20213 3.25862 3.31935 3.45630 3.57900 4.05311 4.31127 4.35225 4.88857 5.08736 5.16596 5.37878 5.52311 5.67739 5.89702 6.01579 6.02726 6.17623 6.29309 6.33788 6.37009 6.56927 6.62739 6.94223 7.04777 7.41976 7.48021 7.62445 7.85889 8.44014 8.79993 9.05309 9.45291 11.00129 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.005331 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.269691 B = 5251.250759 C = 5706.703154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.001 4.001 3 H 0.056 0.944 4 C -0.510 4.510 5 H 0.094 0.906 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.527 3.473 13 O -0.510 6.510 14 N -0.683 5.683 15 C 0.133 3.867 16 C -0.096 4.096 17 C -0.131 4.131 18 C 0.090 3.910 19 O -0.499 6.499 20 C -0.152 4.152 21 C 0.083 3.917 22 O -0.493 6.493 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.411 0.589 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.387 0.613 31 H 0.134 0.866 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 2.884 -17.118 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.074 0.926 4 C -0.548 4.548 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.317 3.683 13 O -0.382 6.382 14 N -0.330 5.330 15 C 0.037 3.963 16 C -0.117 4.117 17 C -0.150 4.150 18 C 0.044 3.956 19 O -0.308 6.308 20 C -0.172 4.172 21 C 0.036 3.964 22 O -0.303 6.303 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.248 0.752 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.242 0.758 31 H 0.152 0.848 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.365 1.973 -17.096 17.213 hybrid contribution 0.047 1.457 0.458 1.528 sum 0.412 3.431 -16.638 16.993 Atomic orbital electron populations 1.22155 0.97040 1.01785 0.99549 1.19336 0.93409 0.97644 0.91910 0.92627 1.20893 1.32504 1.14293 0.87118 0.88779 1.24968 0.95738 0.96571 0.95714 1.69874 1.45157 1.40104 0.97929 0.86918 0.80750 0.83715 0.77200 1.20403 1.22195 1.19233 1.21630 0.78682 0.84379 0.83608 1.90577 1.36381 1.25266 1.86015 1.44027 1.48292 1.36468 1.04224 1.18314 0.98827 0.92172 0.86974 1.21252 0.98854 0.92844 0.98711 1.21370 1.01153 1.00630 0.91848 1.18166 1.00722 0.89984 0.86694 1.84850 1.25784 1.80690 1.39493 1.21384 1.02605 0.94579 0.98615 1.17965 1.01861 0.83537 0.93079 1.84811 1.43053 1.14245 1.88193 0.92139 0.92962 0.94698 0.92433 0.75247 0.83028 0.84992 0.75814 0.84828 0.75534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.57 37.16 0.32 -2.61 16 2 C 0.00 -0.03 2.24 -92.92 -0.21 -0.24 16 3 H 0.06 1.20 7.20 -51.93 -0.37 0.83 16 4 C -0.51 -14.25 8.96 -34.44 -0.31 -14.55 16 5 H 0.09 2.99 7.00 -52.49 -0.37 2.62 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 8 Si 0.88 20.73 24.37 -169.99 -4.14 16.59 16 9 H -0.28 -6.30 6.87 56.52 0.39 -5.92 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -5.80 6.53 56.52 0.37 -5.43 16 12 C 0.53 11.00 6.99 -10.98 -0.08 10.93 16 13 O -0.51 -12.27 12.89 5.54 0.07 -12.20 16 14 N -0.68 -11.27 5.11 -9.71 -0.05 -11.32 16 15 C 0.13 2.10 6.33 -83.42 -0.53 1.58 16 16 C -0.10 -1.54 8.69 -39.43 -0.34 -1.89 16 17 C -0.13 -1.77 9.98 -39.42 -0.39 -2.16 16 18 C 0.09 1.12 6.70 -39.23 -0.26 0.86 16 19 O -0.50 -5.28 13.50 -19.64 -0.27 -5.55 16 20 C -0.15 -1.87 9.92 -39.32 -0.39 -2.26 16 21 C 0.08 1.12 6.72 -39.09 -0.26 0.85 16 22 O -0.49 -5.72 13.06 -19.66 -0.26 -5.98 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 25 H 0.03 0.55 7.47 -51.93 -0.39 0.16 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.41 5.82 7.87 -40.82 -0.32 5.49 16 28 H 0.15 2.74 6.20 -52.49 -0.33 2.41 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.39 2.19 9.06 45.56 0.41 2.61 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.39 2.97 9.06 45.56 0.41 3.38 16 LS Contribution 273.64 15.07 4.12 4.12 Total: -1.00 -33.75 273.64 -3.87 -37.62 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -1.57 Total: 10.50 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.55 Total: -7.56 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.72 Total: -37.55 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.45 Total: -23.73 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.75 -3.87 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558155708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.216 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds