Wall clock time and date at job start Mon Mar 30 2020 00:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47235 * 270.00221 * 3 2 1 5 5 H 1.48501 * 109.47428 * 30.00176 * 3 2 1 6 6 H 1.48502 * 109.47137 * 150.00543 * 3 2 1 7 7 C 1.38814 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99805 * 176.89294 * 9 7 2 11 11 C 1.52996 * 115.55466 * 295.00071 * 10 9 7 12 12 N 1.46501 * 109.46960 * 324.36731 * 11 10 9 13 13 C 1.34778 * 120.00107 * 174.42033 * 12 11 10 14 14 O 1.21680 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.46719 * 119.99937 * 179.97438 * 13 12 11 16 16 C 1.36342 * 126.64709 * 180.02562 * 15 13 12 17 17 N 1.33685 * 107.45968 * 180.02562 * 16 15 13 18 18 C 1.30622 * 108.99570 * 359.97438 * 17 16 15 19 19 O 1.33672 * 109.14805 * 359.73987 * 18 17 16 20 20 C 1.53000 * 117.49899 * 149.33001 * 10 9 7 21 21 C 1.53002 * 117.49613 * 80.67174 * 10 9 7 22 22 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99640 * 356.62151 * 9 7 2 24 24 H 1.09003 * 109.47419 * 84.36247 * 11 10 9 25 25 H 1.09000 * 109.47463 * 204.37091 * 11 10 9 26 26 H 0.97000 * 119.99809 * 354.42327 * 12 11 10 27 27 H 1.08011 * 126.27081 * 0.03051 * 16 15 13 28 28 H 1.07994 * 125.42569 * 179.97438 * 18 17 16 29 29 H 1.09009 * 117.49748 * 0.02562 * 20 10 9 30 30 H 1.08999 * 117.50200 * 145.01533 * 20 10 9 31 31 H 1.09001 * 117.49624 * 214.97642 * 21 10 9 32 32 H 1.08997 * 117.50123 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0564 -3.6558 -0.0699 11 6 2.8313 -3.9008 -1.3661 12 7 2.0825 -3.3439 -2.4954 13 6 2.6256 -3.3420 -3.7289 14 8 3.7381 -3.8025 -3.9045 15 6 1.8754 -2.7847 -4.8599 16 6 2.2910 -2.7141 -6.1565 17 7 1.3115 -2.1382 -6.8609 18 6 0.3205 -1.8551 -6.0584 19 8 0.6342 -2.2464 -4.8193 20 6 1.4315 -4.8702 0.6198 21 6 2.6626 -4.1936 1.2279 22 1 -0.4850 0.8400 0.0004 23 1 0.3569 -2.3888 0.0493 24 1 3.8065 -3.4179 -1.3034 25 1 2.9653 -4.9727 -1.5124 26 1 1.1958 -2.9764 -2.3553 27 1 3.2380 -3.0602 -6.5437 28 1 -0.6063 -1.3838 -6.3503 29 1 0.4763 -4.7259 1.1248 30 1 1.5726 -5.8437 0.1502 31 1 3.6133 -4.7223 1.1581 32 1 2.5180 -3.6040 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754526522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:20 Heat of formation + Delta-G solvation = 7.021752 kcal Electronic energy + Delta-G solvation = -18217.090369 eV Core-core repulsion = 15179.999930 eV Total energy + Delta-G solvation = -3037.090440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.43006 -40.68533 -38.98014 -36.07422 -35.13734 -34.98791 -31.71348 -31.58909 -28.18483 -25.94952 -24.70688 -23.65497 -23.20400 -21.68128 -20.83300 -19.43090 -19.09772 -17.87050 -17.84812 -17.48710 -16.56145 -16.14907 -15.87896 -15.46938 -15.26359 -14.99860 -14.72693 -14.41519 -13.92765 -13.60150 -12.94730 -12.87413 -12.57213 -12.27784 -12.19474 -12.05459 -11.93301 -11.75774 -11.41159 -10.95725 -10.69699 -10.31842 -9.91583 -9.05706 -7.96893 -5.25636 -0.20700 1.40924 1.43084 1.45302 1.48632 1.51733 2.00461 2.22853 2.51463 3.03898 3.26099 3.38654 3.61542 3.80669 3.86717 3.88557 4.16254 4.39944 4.49162 4.58415 4.70659 4.82934 4.86179 5.02971 5.14469 5.20233 5.34690 5.42223 5.56115 6.25291 6.31656 6.55555 6.96167 7.32601 8.03028 8.27877 9.24696 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.008352 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.950961 B = 3351.723126 C = 4485.571044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.956 3.044 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.224 4.224 8 H 0.065 0.935 9 N -0.695 5.695 10 C 0.094 3.906 11 C 0.156 3.844 12 N -0.685 5.685 13 C 0.599 3.401 14 O -0.559 6.559 15 C -0.128 4.128 16 C 0.051 3.949 17 N -0.520 5.520 18 C 0.218 3.782 19 O -0.197 6.197 20 C -0.157 4.157 21 C -0.184 4.184 22 H 0.251 0.749 23 H 0.379 0.621 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.411 0.589 27 H 0.208 0.792 28 H 0.304 0.696 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -8.008 -7.260 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.356 4.356 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.002 3.998 11 C 0.030 3.970 12 N -0.333 5.333 13 C 0.385 3.615 14 O -0.441 6.441 15 C -0.183 4.183 16 C -0.091 4.091 17 N -0.248 5.248 18 C -0.006 4.006 19 O -0.083 6.083 20 C -0.195 4.195 21 C -0.224 4.224 22 H 0.060 0.940 23 H 0.213 0.787 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.248 0.752 27 H 0.225 0.775 28 H 0.319 0.681 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.843 -8.050 -7.914 11.320 hybrid contribution -0.402 1.378 0.944 1.719 sum 0.441 -6.672 -6.969 9.658 Atomic orbital electron populations 1.69755 1.05936 1.25875 1.59222 1.25299 0.96191 1.00088 1.03829 0.85410 0.77941 0.80932 0.77099 1.22106 1.22083 1.20087 1.19280 0.90864 0.84600 1.40824 0.91699 1.41796 1.05074 0.99333 1.87217 1.20459 1.00376 0.87311 0.91629 1.21179 0.94054 0.98032 0.83743 1.45767 1.21388 1.59668 1.06521 1.16546 0.84574 0.78725 0.81624 1.90813 1.19248 1.49496 1.84555 1.23068 0.86648 1.10339 0.98234 1.23812 1.00178 0.97036 0.88107 1.70482 1.02024 1.17447 1.34867 1.29604 1.01131 0.94560 0.75267 1.84590 1.29525 1.58484 1.35706 1.23293 0.97443 0.95849 1.02891 1.23376 0.97857 1.03701 0.97454 0.94001 0.78727 0.92825 0.89411 0.75227 0.77520 0.68130 0.89225 0.86141 0.87262 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.66 13.06 21.65 0.28 -54.38 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 3 Si 0.96 45.20 29.55 68.60 2.03 47.23 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.22 -11.61 9.81 84.03 0.82 -10.79 16 8 H 0.07 3.41 7.83 -2.91 -0.02 3.38 16 9 N -0.70 -31.53 4.49 -303.35 -1.36 -32.90 16 10 C 0.09 3.36 2.46 3.60 0.01 3.37 16 11 C 0.16 5.33 5.69 86.38 0.49 5.83 16 12 N -0.69 -24.86 5.39 -467.05 -2.52 -27.38 16 13 C 0.60 21.85 7.79 86.46 0.67 22.52 16 14 O -0.56 -22.19 16.88 -4.28 -0.07 -22.26 16 15 C -0.13 -4.14 7.18 24.04 0.17 -3.97 16 16 C 0.05 1.47 11.66 83.97 0.98 2.45 16 17 N -0.52 -13.73 11.26 -315.08 -3.55 -17.28 16 18 C 0.22 4.80 13.21 130.42 1.72 6.52 16 19 O -0.20 -5.86 10.57 -7.15 -0.08 -5.94 16 20 C -0.16 -4.43 10.11 30.62 0.31 -4.12 16 21 C -0.18 -5.70 10.18 30.62 0.31 -5.39 16 22 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 23 H 0.38 18.48 8.03 -92.71 -0.74 17.74 16 24 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 25 H 0.09 2.56 7.91 -2.39 -0.02 2.54 16 26 H 0.41 15.72 7.58 -92.71 -0.70 15.02 16 27 H 0.21 5.13 8.06 -2.91 -0.02 5.10 16 28 H 0.30 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.09 2.60 8.14 -2.38 -0.02 2.59 16 30 H 0.12 2.67 8.06 -2.39 -0.02 2.65 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -65.50 292.50 0.41 -65.09 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.28 Total: 34.24 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 5.96 Total: 13.57 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -7.14 Total: -131.93 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.15 Total: -28.20 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.50 0.41 -65.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754526522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.108 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds