Wall clock time and date at job start Sun Mar 29 2020 23:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 H 1.09003 * 109.47334 * 306.27913 * 3 2 1 5 5 C 1.50696 * 109.47043 * 186.27623 * 3 2 1 6 6 H 1.07998 * 119.99783 * 275.03119 * 5 3 2 7 7 C 1.37876 * 119.99841 * 95.02973 * 5 3 2 8 8 N 1.31519 * 119.99722 * 184.18914 * 7 5 3 9 9 Si 1.86792 * 120.00340 * 4.19253 * 7 5 3 10 10 H 1.48499 * 109.47357 * 84.80844 * 9 7 5 11 11 H 1.48495 * 109.47534 * 204.81208 * 9 7 5 12 12 H 1.48497 * 109.47117 * 324.81265 * 9 7 5 13 13 N 1.46501 * 109.47197 * 66.27303 * 3 2 1 14 14 C 1.37835 * 120.00391 * 275.00446 * 13 3 2 15 15 N 1.32987 * 120.64343 * 354.00565 * 14 13 3 16 16 C 1.31665 * 120.84771 * 179.76490 * 15 14 13 17 17 N 1.31981 * 122.24252 * 0.53458 * 16 15 14 18 18 C 1.32183 * 121.20102 * 359.73626 * 17 16 15 19 19 C 1.39828 * 118.99565 * 0.02562 * 18 17 16 20 20 C 1.47294 * 121.00155 * 180.02562 * 19 18 17 21 21 O 1.21521 * 120.00001 * 185.87452 * 20 19 18 22 22 O 1.34770 * 120.00184 * 5.87370 * 20 19 18 23 23 H 1.09000 * 109.46720 * 300.00065 * 1 2 3 24 24 H 1.09004 * 109.46631 * 60.00188 * 1 2 3 25 25 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46720 * 239.99935 * 2 1 3 27 27 H 1.08996 * 109.46521 * 120.00095 * 2 1 3 28 28 H 0.97006 * 119.99710 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99428 * 94.99627 * 13 3 2 30 30 H 1.07995 * 118.87553 * 180.24643 * 16 15 14 31 31 H 1.08007 * 120.50238 * 179.97438 * 18 17 16 32 32 H 0.96693 * 117.00159 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5879 1.9878 -0.8285 5 6 3.5390 1.4453 -0.1553 6 1 4.1720 1.3304 0.7122 7 6 4.1023 1.5945 -1.4049 8 7 5.4068 1.5146 -1.5519 9 14 3.0128 1.9103 -2.8889 10 1 2.7299 3.3643 -2.9949 11 1 3.7059 1.4500 -4.1189 12 1 1.7363 1.1678 -2.7328 13 7 1.6789 2.0882 1.2645 14 6 0.4368 2.6669 1.4127 15 7 -0.3988 2.7520 0.3816 16 6 -1.5880 3.2998 0.5198 17 7 -2.0053 3.7964 1.6692 18 6 -1.2418 3.7615 2.7477 19 6 0.0297 3.1865 2.6597 20 6 0.9168 3.1237 3.8338 21 8 2.0561 2.7182 3.7136 22 8 0.4651 3.5158 5.0415 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8031 1.6192 -2.4312 29 1 2.3140 2.1083 1.9975 30 1 -2.2426 3.3486 -0.3379 31 1 -1.5945 4.1716 3.6825 32 1 1.0839 3.4566 5.7821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:12 Heat of formation + Delta-G solvation = -63.357950 kcal Electronic energy + Delta-G solvation = -18691.227377 eV Core-core repulsion = 15651.085044 eV Total energy + Delta-G solvation = -3040.142332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.23055 -40.66410 -38.53726 -37.05850 -35.06642 -33.98194 -33.78984 -31.73517 -29.26881 -26.53215 -25.16023 -24.11185 -23.12641 -21.62672 -19.86823 -19.37634 -18.37120 -18.21666 -18.03475 -17.03304 -16.70744 -16.02980 -15.72443 -15.59922 -14.84236 -14.75889 -14.62170 -14.25552 -13.80736 -13.72446 -12.93782 -12.81359 -12.67658 -12.63670 -12.39008 -12.14021 -11.85883 -11.69114 -11.41139 -11.14930 -11.03235 -10.82127 -10.13288 -9.08434 -8.41788 -6.51329 -0.43814 0.44338 1.32208 1.33833 1.46158 1.50460 2.00648 2.25756 2.29591 2.92699 2.98240 3.33923 3.38256 3.74032 3.99855 4.27931 4.36188 4.45998 4.60406 4.62811 4.77075 5.08131 5.18273 5.20964 5.36323 5.40142 5.49471 5.57028 5.84370 5.91219 6.39731 6.52411 6.72713 6.99649 7.16094 7.32443 8.74029 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.008095 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.102685 B = 3458.205179 C = 4041.274780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.057 0.943 5 C -0.540 4.540 6 H 0.035 0.965 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.236 1.236 13 N -0.665 5.665 14 C 0.471 3.529 15 N -0.596 5.596 16 C 0.366 3.634 17 N -0.587 5.587 18 C 0.259 3.741 19 C -0.347 4.347 20 C 0.551 3.449 21 O -0.559 6.559 22 O -0.494 6.494 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.272 0.728 29 H 0.416 0.584 30 H 0.231 0.769 31 H 0.208 0.792 32 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.043 3.555 7.858 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C 0.137 3.863 4 H 0.075 0.925 5 C -0.578 4.578 6 H 0.054 0.946 7 C -0.174 4.174 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.159 1.159 13 N -0.296 5.296 14 C 0.222 3.778 15 N -0.322 5.322 16 C 0.078 3.922 17 N -0.307 5.307 18 C 0.092 3.908 19 C -0.361 4.361 20 C 0.398 3.602 21 O -0.452 6.452 22 O -0.307 6.307 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.262 0.738 30 H 0.247 0.753 31 H 0.224 0.776 32 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -16.239 3.371 6.447 17.794 hybrid contribution 1.799 -0.046 0.788 1.964 sum -14.440 3.325 7.236 16.490 Atomic orbital electron populations 1.21728 0.94856 1.00662 1.01326 1.21989 0.95939 0.97540 1.00894 1.19141 0.93116 0.90723 0.83308 0.92547 1.21217 0.90798 1.51405 0.94364 0.94647 1.25817 0.96235 0.93356 1.01943 1.70025 1.12118 1.49923 1.25167 0.85857 0.80227 0.79617 0.78103 1.19648 1.20476 1.15889 1.46305 1.11751 1.52863 1.18678 1.18890 0.86522 0.84115 0.88248 1.68379 1.07049 1.25746 1.31021 1.25639 0.88270 0.82467 0.95874 1.68600 1.36872 1.24758 1.00423 1.23784 0.85141 0.83801 0.98036 1.20063 1.01355 1.22360 0.92332 1.20248 0.84264 0.72307 0.83353 1.90695 1.21856 1.47119 1.85530 1.84460 1.49295 1.78852 1.18061 0.94504 0.92170 0.92377 0.92212 0.93762 0.91933 0.73787 0.75350 0.77552 0.70368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.56 71.99 0.62 -3.84 16 2 C -0.12 -5.25 5.58 30.60 0.17 -5.08 16 3 C 0.24 11.40 1.89 44.24 0.08 11.48 16 4 H 0.06 2.71 4.66 -2.39 -0.01 2.70 16 5 C -0.54 -30.83 9.05 25.60 0.23 -30.60 16 6 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 7 C 0.03 1.53 5.47 84.65 0.46 1.99 16 8 N -0.93 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.94 43.50 26.97 68.60 1.85 45.36 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.24 -10.03 6.85 99.48 0.68 -9.35 16 13 N -0.66 -29.06 5.04 -326.93 -1.65 -30.71 16 14 C 0.47 17.40 5.89 133.77 0.79 18.19 16 15 N -0.60 -20.17 7.11 -196.90 -1.40 -21.57 16 16 C 0.37 9.43 12.26 180.87 2.22 11.65 16 17 N -0.59 -14.49 10.41 -199.12 -2.07 -16.56 16 18 C 0.26 6.12 10.89 85.02 0.93 7.05 16 19 C -0.35 -10.55 5.92 -19.81 -0.12 -10.67 16 20 C 0.55 16.03 8.26 70.20 0.58 16.61 16 21 O -0.56 -20.77 14.61 19.77 0.29 -20.48 16 22 O -0.49 -8.99 12.79 -56.81 -0.73 -9.72 16 23 H 0.04 1.28 5.70 -2.39 -0.01 1.27 16 24 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.42 19.20 5.29 -92.71 -0.49 18.71 16 30 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.21 3.25 7.72 -2.91 -0.02 3.23 16 32 H 0.43 4.08 9.11 -74.06 -0.67 3.40 16 Total: -1.00 -71.05 274.93 2.54 -68.51 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.01 Total: 25.50 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.96 Total: 16.77 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -4.82 Total: -125.94 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.44 Total: -30.20 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.85 Total: 45.36 kcal Total: -71.05 2.54 -68.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.147 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds