Wall clock time and date at job start Sun Mar 29 2020 23:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34416 * 124.35145 * 2 1 4 4 O 1.21278 * 124.94276 * 0.40778 * 3 2 1 5 5 C 1.51280 * 110.11742 * 180.38526 * 3 2 1 6 6 C 1.54631 * 104.19479 * 16.25696 * 5 3 2 7 7 C 1.46774 * 124.34850 * 179.97438 * 2 1 3 8 8 H 1.08993 * 110.24148 * 43.91525 * 7 2 1 9 9 C 1.50697 * 110.24193 * 282.00352 * 7 2 1 10 10 O 1.21291 * 120.00066 * 341.45441 * 9 7 2 11 11 N 1.34780 * 119.99997 * 161.45481 * 9 7 2 12 12 C 1.37093 * 119.99995 * 180.02562 * 11 9 7 13 13 H 1.08002 * 120.00694 * 19.82053 * 12 11 9 14 14 C 1.38951 * 119.99509 * 199.82247 * 12 11 9 15 15 N 1.31413 * 120.00284 * 21.66527 * 14 12 11 16 16 Si 1.86801 * 120.00086 * 201.66203 * 14 12 11 17 17 H 1.48501 * 109.46876 * 59.99987 * 16 14 12 18 18 H 1.48498 * 109.47528 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47103 * 300.00268 * 16 14 12 20 20 C 1.46501 * 119.99709 * 359.97438 * 11 9 7 21 21 C 1.47204 * 109.46933 * 84.30603 * 20 11 9 22 22 N 5.39956 * 139.58668 * 183.76990 * 2 1 3 23 23 H 1.08997 * 109.47145 * 270.02304 * 1 2 3 24 24 H 1.08999 * 109.47202 * 30.02513 * 1 2 3 25 25 H 1.09000 * 109.47341 * 150.02350 * 1 2 3 26 26 H 1.09004 * 110.48780 * 134.93219 * 5 3 2 27 27 H 1.08996 * 110.49169 * 257.57579 * 5 3 2 28 28 H 1.09000 * 110.96589 * 217.08599 * 6 5 3 29 29 H 1.08994 * 110.97609 * 93.32341 * 6 5 3 30 30 H 0.97001 * 119.99986 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47215 * 324.30788 * 20 11 9 32 32 H 1.08994 * 109.47289 * 204.30492 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 0.0071 5 6 3.6898 0.7378 -0.0096 6 6 3.7011 -0.7488 -0.4349 7 6 2.2931 -1.2118 0.0005 8 1 1.8977 -1.9391 -0.7084 9 6 2.3445 -1.8076 1.3838 10 8 2.0487 -1.1318 2.3466 11 7 2.7193 -3.0914 1.5511 12 6 2.7655 -3.6335 2.8094 13 1 2.2163 -3.1722 3.6168 14 6 3.5192 -4.7766 3.0461 15 7 4.4993 -5.0978 2.2316 16 14 3.1395 -5.8568 4.5220 17 1 1.7460 -6.3603 4.4214 18 1 4.0805 -7.0053 4.5501 19 1 3.2904 -5.0633 5.7682 20 6 3.0761 -3.9077 0.3881 21 6 4.4868 -3.6738 0.0387 22 7 5.5762 -3.4929 -0.2302 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 4.2329 1.3457 -0.7332 27 1 4.1192 0.8531 0.9856 28 1 4.4753 -1.3010 0.0978 29 1 3.8274 -0.8452 -1.5132 30 1 5.0256 -5.8956 2.3970 31 1 2.4426 -3.6345 -0.4557 32 1 2.9305 -4.9615 0.6255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546233890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:32 Heat of formation + Delta-G solvation = -17.356179 kcal Electronic energy + Delta-G solvation = -18986.519303 eV Core-core repulsion = 15948.371757 eV Total energy + Delta-G solvation = -3038.147546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51341 -38.49652 -36.11662 -35.62781 -34.37002 -32.58370 -31.92672 -28.22215 -27.42269 -26.38738 -24.82705 -22.22611 -20.10188 -18.81874 -18.03414 -17.14913 -16.53552 -16.20956 -15.53312 -15.07053 -14.56101 -14.11214 -14.01326 -13.40576 -13.24397 -13.08023 -12.99076 -12.43869 -12.34933 -12.03901 -12.01127 -11.73853 -11.48472 -11.22773 -11.13053 -10.92381 -10.64119 -10.51535 -10.41378 -9.53597 -9.36762 -9.17321 -8.19808 -8.13739 -6.61947 -4.12969 2.87237 3.02801 3.14956 3.16346 3.24885 3.37702 3.66494 3.83728 4.02197 4.56424 4.60592 4.68602 4.80879 5.01688 5.05352 5.32779 5.38095 5.47617 5.56622 5.75771 5.87799 5.93900 6.00396 6.08259 6.15883 6.32850 6.69677 7.33476 7.36617 7.77019 8.15067 8.45865 8.60482 8.87037 9.05392 9.58034 10.43635 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.007708 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.085477 B = 3631.612934 C = 4169.381954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.596 5.596 3 C 0.527 3.473 4 O -0.545 6.545 5 C -0.151 4.151 6 C -0.123 4.123 7 C 0.114 3.886 8 H 0.100 0.900 9 C 0.442 3.558 10 O -0.558 6.558 11 N -0.437 5.437 12 C -0.317 4.317 13 H 0.108 0.892 14 C 0.036 3.964 15 N -0.873 5.873 16 Si 0.928 3.072 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.217 3.783 21 C 0.243 3.757 22 N -0.465 5.465 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.275 0.725 31 H 0.085 0.915 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 0.238 -7.355 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.329 5.329 3 C 0.316 3.684 4 O -0.423 6.423 5 C -0.191 4.191 6 C -0.161 4.161 7 C 0.006 3.994 8 H 0.118 0.882 9 C 0.229 3.771 10 O -0.439 6.439 11 N -0.157 5.157 12 C -0.444 4.444 13 H 0.126 0.874 14 C -0.169 4.169 15 N -0.511 5.511 16 Si 0.754 3.246 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.090 3.910 21 C -0.075 4.075 22 N -0.145 5.145 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.622 1.276 -7.253 8.207 hybrid contribution -0.345 -1.031 0.977 1.462 sum -3.967 0.244 -6.275 7.428 Atomic orbital electron populations 1.21512 0.78045 1.02325 1.02351 1.47770 1.06294 1.06321 1.72480 1.20755 0.89269 0.84082 0.74328 1.90663 1.78932 1.21077 1.51612 1.22291 0.94824 0.97094 1.04899 1.22643 0.95486 0.95714 1.02303 1.21713 0.92470 0.88006 0.97172 0.88197 1.20344 0.84773 0.81947 0.90085 1.90581 1.52606 1.59321 1.41410 1.43646 1.58097 1.07852 1.06148 1.19655 1.28982 1.08791 0.86967 0.87450 1.25297 0.93703 0.98728 0.99173 1.69817 1.15926 1.26246 1.39131 0.85962 0.78429 0.79096 0.81129 1.19623 1.20929 1.19760 1.18761 0.83376 1.00274 0.88622 1.29209 0.95435 0.91864 0.90974 1.80951 1.11788 1.10016 1.11712 0.92199 0.90918 0.91224 0.88164 0.87603 0.88550 0.89408 0.91398 0.89719 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 10.95 59.85 0.66 2.06 16 2 N -0.60 -10.00 2.56 -174.02 -0.45 -10.45 16 3 C 0.53 9.64 8.02 -10.86 -0.09 9.55 16 4 O -0.54 -11.44 17.60 5.56 0.10 -11.34 16 5 C -0.15 -2.37 6.85 -26.74 -0.18 -2.55 16 6 C -0.12 -1.87 5.88 -25.10 -0.15 -2.01 16 7 C 0.11 1.85 2.71 -68.16 -0.19 1.67 16 8 H 0.10 1.27 6.39 -51.93 -0.33 0.94 16 9 C 0.44 9.30 6.73 -10.99 -0.07 9.23 16 10 O -0.56 -14.10 16.25 5.55 0.09 -14.01 16 11 N -0.44 -9.34 2.60 -117.93 -0.31 -9.65 16 12 C -0.32 -7.68 9.28 -14.93 -0.14 -7.82 16 13 H 0.11 2.79 7.42 -52.49 -0.39 2.40 16 14 C 0.04 0.83 4.84 -17.47 -0.08 0.74 16 15 N -0.87 -20.72 9.57 55.50 0.53 -20.19 16 16 Si 0.93 18.74 29.60 -169.99 -5.03 13.71 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C 0.22 3.82 4.91 -6.83 -0.03 3.78 16 21 C 0.24 4.76 10.95 -20.74 -0.23 4.53 16 22 N -0.46 -9.84 18.12 42.17 0.76 -9.07 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 28 H 0.10 1.70 5.63 -51.93 -0.29 1.41 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.09 1.07 6.20 -51.93 -0.32 0.75 16 32 H 0.13 2.27 6.63 -51.93 -0.34 1.93 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -31.48 277.96 -3.96 -35.44 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.34 Total: 2.20 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: -0.50 Total: 19.17 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.54 Total: -49.36 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.19 Total: -25.35 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.48 -3.96 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.085 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds