Wall clock time and date at job start Sun Mar 29 2020 23:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34416 * 124.35145 * 2 1 4 4 O 1.21278 * 124.94276 * 0.40778 * 3 2 1 5 5 C 1.51280 * 110.11742 * 180.38526 * 3 2 1 6 6 C 1.54631 * 104.19479 * 16.25696 * 5 3 2 7 7 C 1.46774 * 124.34850 * 179.97438 * 2 1 3 8 8 H 1.08993 * 110.24148 * 43.91525 * 7 2 1 9 9 C 1.50697 * 110.24193 * 282.00352 * 7 2 1 10 10 O 1.21291 * 120.00066 * 341.45441 * 9 7 2 11 11 N 1.34780 * 119.99997 * 161.45481 * 9 7 2 12 12 C 1.37093 * 119.99995 * 180.02562 * 11 9 7 13 13 H 1.08002 * 120.00694 * 19.82053 * 12 11 9 14 14 C 1.38951 * 119.99509 * 199.82247 * 12 11 9 15 15 N 1.31413 * 120.00284 * 21.66527 * 14 12 11 16 16 Si 1.86801 * 120.00086 * 201.66203 * 14 12 11 17 17 H 1.48501 * 109.46876 * 59.99987 * 16 14 12 18 18 H 1.48498 * 109.47528 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47103 * 300.00268 * 16 14 12 20 20 C 1.46501 * 119.99709 * 359.97438 * 11 9 7 21 21 C 1.47204 * 109.46933 * 84.30603 * 20 11 9 22 22 N 5.39956 * 139.58668 * 183.76990 * 2 1 3 23 23 H 1.08997 * 109.47145 * 270.02304 * 1 2 3 24 24 H 1.08999 * 109.47202 * 30.02513 * 1 2 3 25 25 H 1.09000 * 109.47341 * 150.02350 * 1 2 3 26 26 H 1.09004 * 110.48780 * 134.93219 * 5 3 2 27 27 H 1.08996 * 110.49169 * 257.57579 * 5 3 2 28 28 H 1.09000 * 110.96589 * 217.08599 * 6 5 3 29 29 H 1.08994 * 110.97609 * 93.32341 * 6 5 3 30 30 H 0.97001 * 119.99986 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47215 * 324.30788 * 20 11 9 32 32 H 1.08994 * 109.47289 * 204.30492 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 0.0071 5 6 3.6898 0.7378 -0.0096 6 6 3.7011 -0.7488 -0.4349 7 6 2.2931 -1.2118 0.0005 8 1 1.8977 -1.9391 -0.7084 9 6 2.3445 -1.8076 1.3838 10 8 2.0487 -1.1318 2.3466 11 7 2.7193 -3.0914 1.5511 12 6 2.7655 -3.6335 2.8094 13 1 2.2163 -3.1722 3.6168 14 6 3.5192 -4.7766 3.0461 15 7 4.4993 -5.0978 2.2316 16 14 3.1395 -5.8568 4.5220 17 1 1.7460 -6.3603 4.4214 18 1 4.0805 -7.0053 4.5501 19 1 3.2904 -5.0633 5.7682 20 6 3.0761 -3.9077 0.3881 21 6 4.4868 -3.6738 0.0387 22 7 5.5762 -3.4929 -0.2302 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 4.2329 1.3457 -0.7332 27 1 4.1192 0.8531 0.9856 28 1 4.4753 -1.3010 0.0978 29 1 3.8274 -0.8452 -1.5132 30 1 5.0256 -5.8956 2.3970 31 1 2.4426 -3.6345 -0.4557 32 1 2.9305 -4.9615 0.6255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546233890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:32 Heat of formation + Delta-G solvation = -38.789126 kcal Electronic energy + Delta-G solvation = -18987.448706 eV Core-core repulsion = 15948.371757 eV Total energy + Delta-G solvation = -3039.076948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92447 -40.06951 -37.67991 -37.17209 -36.03997 -33.95811 -33.53861 -29.71315 -28.90950 -27.56865 -26.50523 -23.58205 -21.60126 -20.22241 -19.70360 -18.61289 -18.05516 -17.59884 -17.11138 -16.48232 -16.14786 -15.70106 -15.47706 -14.79833 -14.68046 -14.57464 -14.44415 -13.92869 -13.70697 -13.46626 -13.34285 -13.17814 -13.03934 -12.85731 -12.47471 -12.37951 -12.15082 -12.09752 -11.98777 -11.11393 -10.96727 -10.75031 -9.92050 -9.63380 -8.40953 -5.97683 1.39469 1.43820 1.50988 1.57915 1.78848 1.91472 2.17545 2.31488 2.38859 2.98729 3.07004 3.30012 3.47102 3.63056 3.82074 3.95315 4.10923 4.33153 4.41459 4.63121 4.67070 4.72840 4.86748 4.88417 4.90497 4.95327 5.44658 5.48813 5.95839 6.08295 6.39471 7.06840 7.08976 7.12913 7.33226 7.89473 8.61437 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.007708 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.085477 B = 3631.612934 C = 4169.381954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.596 5.596 3 C 0.516 3.484 4 O -0.580 6.580 5 C -0.150 4.150 6 C -0.114 4.114 7 C 0.120 3.880 8 H 0.150 0.850 9 C 0.437 3.563 10 O -0.612 6.612 11 N -0.445 5.445 12 C -0.342 4.342 13 H 0.078 0.922 14 C 0.013 3.987 15 N -0.884 5.884 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.287 1.287 20 C 0.215 3.785 21 C 0.255 3.745 22 N -0.495 5.495 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.276 0.724 31 H 0.146 0.854 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -0.884 -9.315 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.327 5.327 3 C 0.306 3.694 4 O -0.461 6.461 5 C -0.189 4.189 6 C -0.153 4.153 7 C 0.013 3.987 8 H 0.168 0.832 9 C 0.226 3.774 10 O -0.496 6.496 11 N -0.165 5.165 12 C -0.469 4.469 13 H 0.096 0.904 14 C -0.191 4.191 15 N -0.522 5.522 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.213 1.213 20 C 0.088 3.912 21 C -0.063 4.063 22 N -0.176 5.176 23 H 0.057 0.943 24 H 0.098 0.902 25 H 0.127 0.873 26 H 0.147 0.853 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.096 0.110 -9.244 10.111 hybrid contribution -0.200 -0.665 1.643 1.783 sum -4.296 -0.555 -7.601 8.749 Atomic orbital electron populations 1.21720 0.76687 1.04677 1.01705 1.47966 1.07364 1.06069 1.71299 1.21201 0.90445 0.83958 0.73813 1.90636 1.79721 1.22446 1.53309 1.22320 0.93499 0.98355 1.04776 1.22662 0.93831 0.94358 1.04409 1.21831 0.93627 0.88525 0.94733 0.83235 1.21251 0.83016 0.81488 0.91675 1.90555 1.54625 1.60616 1.43846 1.43777 1.57806 1.08531 1.06363 1.19487 1.29698 1.09693 0.88057 0.90440 1.25798 0.93207 0.98961 1.01088 1.69890 1.16004 1.26292 1.40033 0.85179 0.78826 0.77495 0.77960 1.18419 1.20414 1.21338 1.19158 0.83193 0.99721 0.89091 1.29555 0.95684 0.90920 0.90099 1.80960 1.12707 1.11087 1.12851 0.94345 0.90213 0.87299 0.85278 0.89547 0.90965 0.85251 0.91438 0.83693 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.43 10.95 127.77 1.40 3.83 16 2 N -0.60 -18.71 2.56 -823.08 -2.11 -20.82 16 3 C 0.52 18.28 8.02 87.90 0.71 18.99 16 4 O -0.58 -24.20 17.60 -3.02 -0.05 -24.25 16 5 C -0.15 -4.46 6.85 30.59 0.21 -4.25 16 6 C -0.11 -3.11 5.88 31.65 0.19 -2.93 16 7 C 0.12 3.52 2.71 44.70 0.12 3.64 16 8 H 0.15 2.90 6.39 -2.39 -0.02 2.88 16 9 C 0.44 17.97 6.73 87.66 0.59 18.56 16 10 O -0.61 -31.52 16.25 -3.06 -0.05 -31.57 16 11 N -0.44 -18.51 2.60 -645.41 -1.67 -20.18 16 12 C -0.34 -16.66 9.28 84.04 0.78 -15.88 16 13 H 0.08 4.18 7.42 -2.91 -0.02 4.16 16 14 C 0.01 0.59 4.84 84.93 0.41 1.00 16 15 N -0.88 -41.12 9.57 21.66 0.21 -40.92 16 16 Si 0.98 38.14 29.60 68.60 2.03 40.18 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 18 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.21 6.90 4.91 84.57 0.42 7.32 16 21 C 0.25 9.39 10.95 89.44 0.98 10.37 16 22 N -0.50 -20.12 18.12 20.01 0.36 -19.76 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.07 2.40 5.63 -2.39 -0.01 2.38 16 29 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.28 12.50 8.31 -92.71 -0.77 11.73 16 31 H 0.15 2.85 6.20 -2.39 -0.01 2.84 16 32 H 0.12 4.11 6.63 -2.39 -0.02 4.09 16 Total: -1.00 -70.70 277.96 5.66 -65.03 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.15 Total: 11.66 kcal Atomic # 6 Polarization: 34.84 SS G_CDS: 5.80 Total: 40.63 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.21 Total: -101.68 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.10 Total: -55.82 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.18 kcal Total: -70.70 5.66 -65.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.244 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds