Wall clock time and date at job start Sun Mar 29 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47272 * 333.32369 * 3 2 1 5 5 C 1.37104 * 119.99922 * 264.39168 * 4 3 2 6 6 H 1.07995 * 119.99993 * 196.18237 * 5 4 3 7 7 C 1.38951 * 119.99869 * 16.18725 * 5 4 3 8 8 N 1.31410 * 120.00049 * 20.83092 * 7 5 4 9 9 Si 1.86802 * 119.99608 * 200.83519 * 7 5 4 10 10 H 1.48496 * 109.47190 * 84.94490 * 9 7 5 11 11 H 1.48504 * 109.47068 * 204.94139 * 9 7 5 12 12 H 1.48495 * 109.47203 * 324.93839 * 9 7 5 13 13 C 1.34776 * 120.00309 * 84.38975 * 4 3 2 14 14 O 1.21289 * 120.00197 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99810 * 359.72534 * 13 4 3 16 16 C 1.52996 * 109.47223 * 180.27360 * 15 13 4 17 17 H 1.09003 * 109.52221 * 54.87794 * 16 15 13 18 18 C 1.53184 * 109.52399 * 174.99902 * 16 15 13 19 19 C 1.53177 * 109.03497 * 176.88829 * 18 16 15 20 20 C 1.53093 * 109.16320 * 303.01871 * 19 18 16 21 21 O 1.42902 * 109.41310 * 57.61190 * 20 19 18 22 22 C 1.42898 * 114.09881 * 298.83921 * 21 20 19 23 23 H 4.40640 * 5.51485 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47168 * 213.32435 * 3 2 1 25 25 H 1.08998 * 109.47052 * 93.32457 * 3 2 1 26 26 H 0.97002 * 119.99839 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47243 * 300.27581 * 15 13 4 28 28 H 1.09004 * 109.47282 * 60.27184 * 15 13 4 29 29 H 1.09000 * 109.54707 * 296.75492 * 18 16 15 30 30 H 1.09000 * 109.53753 * 57.02260 * 18 16 15 31 31 H 1.08999 * 109.52586 * 62.92692 * 19 18 16 32 32 H 1.09006 * 109.51864 * 183.05197 * 19 18 16 33 33 H 1.08997 * 109.48100 * 177.59628 * 20 19 18 34 34 H 1.09002 * 109.48394 * 297.61570 * 20 19 18 35 35 H 1.09003 * 109.48272 * 301.17502 * 22 21 20 36 36 H 1.09000 * 109.48014 * 181.14597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2333 0.6201 5 6 3.4728 -1.2455 1.9488 6 1 4.0688 -2.0534 2.3469 7 6 3.0484 -0.2186 2.7831 8 7 2.0203 0.5243 2.4399 9 14 3.9396 0.1058 4.3924 10 1 5.1106 0.9839 4.1416 11 1 3.0154 0.7732 5.3442 12 1 4.4010 -1.1816 4.9710 13 6 3.2525 -2.3565 -0.1155 14 8 3.6568 -3.3782 0.3980 15 6 2.8752 -2.3446 -1.5744 16 6 3.0948 -3.7369 -2.1694 17 1 2.5461 -4.4742 -1.5833 18 6 2.5953 -3.7595 -3.6173 19 6 2.8911 -5.1335 -4.2264 20 6 4.3925 -5.4154 -4.1252 21 8 4.7971 -5.3487 -2.7563 22 6 4.5883 -4.0728 -2.1477 23 1 -1.0499 -0.0005 0.0000 24 1 3.0089 0.8595 0.5646 25 1 3.0093 0.0604 -1.0259 26 1 1.7238 1.2410 3.0225 27 1 1.8259 -2.0674 -1.6761 28 1 3.4950 -1.6211 -2.1042 29 1 1.5210 -3.5763 -3.6354 30 1 3.1079 -2.9880 -4.1918 31 1 2.3392 -5.8998 -3.6821 32 1 2.5879 -5.1407 -5.2734 33 1 4.6029 -6.4099 -4.5185 34 1 4.9417 -4.6723 -4.7034 35 1 5.1400 -3.3120 -2.6998 36 1 4.9398 -4.1002 -1.1163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798802397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:42 Heat of formation + Delta-G solvation = -27.152653 kcal Electronic energy + Delta-G solvation = -18816.015115 eV Core-core repulsion = 15880.983105 eV Total energy + Delta-G solvation = -2935.032010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49741 -38.26229 -35.30249 -33.96129 -32.20717 -31.61663 -31.21973 -27.51566 -26.33374 -24.75941 -24.37964 -22.29317 -19.92106 -18.83372 -17.87120 -16.61458 -16.20012 -15.93306 -15.68103 -14.74532 -14.68496 -14.38225 -14.00557 -13.90522 -13.28370 -12.78649 -12.40980 -12.31617 -12.16430 -11.87891 -11.57104 -11.34512 -11.02557 -10.99667 -10.64640 -10.54800 -10.46918 -10.24042 -10.00512 -9.38072 -9.28217 -9.15195 -8.89473 -8.34981 -7.86945 -6.33606 -3.85511 3.15594 3.25638 3.29829 3.66315 3.90626 4.03618 4.16304 4.19416 4.78405 4.93359 4.99689 5.03522 5.19224 5.22021 5.40449 5.46575 5.55798 5.66435 5.80870 5.85604 5.91745 5.93463 6.01968 6.11207 6.18430 6.32839 6.38437 6.67609 6.71124 6.76688 7.02027 7.50077 7.56492 8.05000 8.42709 8.78637 9.13954 9.36400 9.91435 10.67317 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.006032 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.184726 B = 4640.491661 C = 5357.375255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.112 4.112 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.449 3.551 14 O -0.580 6.580 15 C -0.127 4.127 16 C -0.101 4.101 17 H 0.084 0.916 18 C -0.119 4.119 19 C -0.154 4.154 20 C 0.058 3.942 21 O -0.383 6.383 22 C 0.064 3.936 23 H 0.199 0.801 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.268 0.732 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -2.054 -11.946 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.107 3.893 4 N -0.160 5.160 5 C -0.441 4.441 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.237 3.763 14 O -0.465 6.465 15 C -0.167 4.167 16 C -0.120 4.120 17 H 0.103 0.897 18 C -0.156 4.156 19 C -0.192 4.192 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.012 4.012 23 H 0.216 0.784 24 H 0.130 0.870 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.819 -2.540 -11.479 11.785 hybrid contribution -0.348 0.753 0.727 1.103 sum 0.472 -1.787 -10.752 10.910 Atomic orbital electron populations 1.24277 0.95393 1.02535 1.06028 1.23217 0.94388 0.98202 0.95516 1.18301 0.84217 0.90894 0.95868 1.43742 1.55889 1.06855 1.09486 1.19693 1.31140 1.09849 0.83465 0.87721 1.25280 0.95258 0.97362 0.99483 1.70082 1.21000 1.20709 1.38570 0.86010 0.79108 0.78831 0.81195 1.20294 1.21153 1.19470 1.20076 0.84311 0.83562 0.88303 1.90494 1.51124 1.31342 1.73507 1.21579 1.02642 0.97297 0.95188 1.21460 0.97981 0.97430 0.95105 0.89736 1.21681 1.01338 0.96635 0.95991 1.22174 0.97690 0.98343 1.00995 1.22522 0.93780 1.01355 0.84274 1.87964 1.83993 1.33869 1.24318 1.22922 0.94489 0.83914 0.99918 0.78411 0.87005 0.92113 0.92153 0.89927 0.90588 0.91594 0.92040 0.91136 0.91382 0.89564 0.93711 0.94301 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.41 19.25 29.55 0.57 -4.84 16 2 C -0.11 -2.47 10.93 -37.12 -0.41 -2.88 16 3 C 0.23 5.01 4.91 -6.83 -0.03 4.98 16 4 N -0.44 -10.95 2.60 -117.94 -0.31 -11.26 16 5 C -0.31 -8.55 9.35 -14.93 -0.14 -8.69 16 6 H 0.11 3.01 7.36 -52.49 -0.39 2.62 16 7 C 0.03 0.78 4.90 -17.47 -0.09 0.69 16 8 N -0.87 -22.56 9.39 55.50 0.52 -22.04 16 9 Si 0.92 20.42 29.60 -169.99 -5.03 15.39 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.45 10.55 7.30 -10.99 -0.08 10.47 16 14 O -0.58 -15.43 13.63 5.55 0.08 -15.36 16 15 C -0.13 -2.28 3.78 -27.89 -0.11 -2.38 16 16 C -0.10 -1.68 2.03 -90.48 -0.18 -1.86 16 17 H 0.08 1.61 7.95 -51.93 -0.41 1.20 16 18 C -0.12 -1.54 5.31 -26.54 -0.14 -1.68 16 19 C -0.15 -1.80 6.14 -26.59 -0.16 -1.96 16 20 C 0.06 0.72 6.84 37.21 0.25 0.97 16 21 O -0.38 -6.41 10.77 -35.23 -0.38 -6.79 16 22 C 0.06 1.10 5.84 37.20 0.22 1.31 16 23 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16 24 H 0.11 2.58 6.34 -51.93 -0.33 2.25 16 25 H 0.06 1.09 6.68 -51.93 -0.35 0.74 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.08 1.46 7.50 -51.93 -0.39 1.07 16 28 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.12 2.42 6.04 -51.93 -0.31 2.11 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -30.44 296.30 -6.03 -36.47 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.08 Total: 4.98 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.30 Total: -5.87 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.21 Total: -33.30 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.30 Total: -22.14 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.44 -6.03 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798802397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.316 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds