Wall clock time and date at job start Sun Mar 29 2020 22:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47272 * 333.32369 * 3 2 1 5 5 C 1.37104 * 119.99922 * 264.39168 * 4 3 2 6 6 H 1.07995 * 119.99993 * 196.18237 * 5 4 3 7 7 C 1.38951 * 119.99869 * 16.18725 * 5 4 3 8 8 N 1.31410 * 120.00049 * 20.83092 * 7 5 4 9 9 Si 1.86802 * 119.99608 * 200.83519 * 7 5 4 10 10 H 1.48496 * 109.47190 * 84.94490 * 9 7 5 11 11 H 1.48504 * 109.47068 * 204.94139 * 9 7 5 12 12 H 1.48495 * 109.47203 * 324.93839 * 9 7 5 13 13 C 1.34776 * 120.00309 * 84.38975 * 4 3 2 14 14 O 1.21289 * 120.00197 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99810 * 359.72534 * 13 4 3 16 16 C 1.52996 * 109.47223 * 180.27360 * 15 13 4 17 17 H 1.09003 * 109.52221 * 54.87794 * 16 15 13 18 18 C 1.53184 * 109.52399 * 174.99902 * 16 15 13 19 19 C 1.53177 * 109.03497 * 176.88829 * 18 16 15 20 20 C 1.53093 * 109.16320 * 303.01871 * 19 18 16 21 21 O 1.42902 * 109.41310 * 57.61190 * 20 19 18 22 22 C 1.42898 * 114.09881 * 298.83921 * 21 20 19 23 23 H 4.40640 * 5.51485 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47168 * 213.32435 * 3 2 1 25 25 H 1.08998 * 109.47052 * 93.32457 * 3 2 1 26 26 H 0.97002 * 119.99839 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47243 * 300.27581 * 15 13 4 28 28 H 1.09004 * 109.47282 * 60.27184 * 15 13 4 29 29 H 1.09000 * 109.54707 * 296.75492 * 18 16 15 30 30 H 1.09000 * 109.53753 * 57.02260 * 18 16 15 31 31 H 1.08999 * 109.52586 * 62.92692 * 19 18 16 32 32 H 1.09006 * 109.51864 * 183.05197 * 19 18 16 33 33 H 1.08997 * 109.48100 * 177.59628 * 20 19 18 34 34 H 1.09002 * 109.48394 * 297.61570 * 20 19 18 35 35 H 1.09003 * 109.48272 * 301.17502 * 22 21 20 36 36 H 1.09000 * 109.48014 * 181.14597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2333 0.6201 5 6 3.4728 -1.2455 1.9488 6 1 4.0688 -2.0534 2.3469 7 6 3.0484 -0.2186 2.7831 8 7 2.0203 0.5243 2.4399 9 14 3.9396 0.1058 4.3924 10 1 5.1106 0.9839 4.1416 11 1 3.0154 0.7732 5.3442 12 1 4.4010 -1.1816 4.9710 13 6 3.2525 -2.3565 -0.1155 14 8 3.6568 -3.3782 0.3980 15 6 2.8752 -2.3446 -1.5744 16 6 3.0948 -3.7369 -2.1694 17 1 2.5461 -4.4742 -1.5833 18 6 2.5953 -3.7595 -3.6173 19 6 2.8911 -5.1335 -4.2264 20 6 4.3925 -5.4154 -4.1252 21 8 4.7971 -5.3487 -2.7563 22 6 4.5883 -4.0728 -2.1477 23 1 -1.0499 -0.0005 0.0000 24 1 3.0089 0.8595 0.5646 25 1 3.0093 0.0604 -1.0259 26 1 1.7238 1.2410 3.0225 27 1 1.8259 -2.0674 -1.6761 28 1 3.4950 -1.6211 -2.1042 29 1 1.5210 -3.5763 -3.6354 30 1 3.1079 -2.9880 -4.1918 31 1 2.3392 -5.8998 -3.6821 32 1 2.5879 -5.1407 -5.2734 33 1 4.6029 -6.4099 -4.5185 34 1 4.9417 -4.6723 -4.7034 35 1 5.1400 -3.3120 -2.6998 36 1 4.9398 -4.1002 -1.1163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798802397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:41 Heat of formation + Delta-G solvation = -45.908839 kcal Electronic energy + Delta-G solvation = -18816.828444 eV Core-core repulsion = 15880.983105 eV Total energy + Delta-G solvation = -2935.845339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98410 -39.77884 -37.13220 -35.29463 -33.99617 -33.01041 -32.83302 -29.04720 -28.02170 -26.21055 -25.87093 -23.55569 -21.13265 -20.51196 -19.66575 -18.37405 -17.88740 -17.20403 -16.94996 -16.50248 -16.11943 -15.98162 -15.48283 -15.18222 -14.79309 -14.31863 -14.06162 -13.70145 -13.48464 -13.41316 -13.32476 -12.85618 -12.59707 -12.46345 -12.18668 -12.06048 -11.87461 -11.60464 -11.24813 -11.11189 -11.05570 -10.61873 -10.34329 -10.19015 -9.80489 -8.31037 -5.90493 1.37089 1.42464 1.52720 1.91701 2.15935 2.33851 2.39402 3.01275 3.06393 3.22162 3.83450 3.86442 3.91290 3.93672 4.08678 4.19494 4.34201 4.42451 4.53113 4.62504 4.76569 4.78797 4.81398 4.94014 5.01325 5.02382 5.13307 5.16646 5.36597 5.44671 5.46861 5.48799 6.08060 6.34802 6.47547 7.14755 7.17903 7.46092 8.03259 8.67327 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.006032 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.184726 B = 4640.491661 C = 5357.375255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.152 4.152 3 C 0.232 3.768 4 N -0.455 5.455 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.437 3.563 14 O -0.623 6.623 15 C -0.113 4.113 16 C -0.097 4.097 17 H 0.049 0.951 18 C -0.113 4.113 19 C -0.151 4.151 20 C 0.048 3.952 21 O -0.410 6.410 22 C 0.069 3.931 23 H 0.232 0.768 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.271 0.729 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -1.079 -14.027 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.154 4.154 3 C 0.110 3.890 4 N -0.174 5.174 5 C -0.478 4.478 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.511 5.511 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.228 3.772 14 O -0.510 6.510 15 C -0.152 4.152 16 C -0.116 4.116 17 H 0.067 0.933 18 C -0.150 4.150 19 C -0.188 4.188 20 C -0.028 4.028 21 O -0.329 6.329 22 C -0.008 4.008 23 H 0.249 0.751 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.108 -1.540 -13.587 13.675 hybrid contribution -0.165 0.398 1.360 1.426 sum -0.057 -1.142 -12.227 12.281 Atomic orbital electron populations 1.25142 0.96377 1.00781 1.04440 1.23504 0.95048 0.99791 0.97021 1.18360 0.84514 0.88811 0.97311 1.43955 1.56128 1.08317 1.08951 1.19558 1.32611 1.10241 0.85418 0.90873 1.25919 0.95500 0.96560 1.02086 1.70172 1.21069 1.20510 1.39395 0.85122 0.78431 0.78193 0.77601 1.18943 1.20277 1.20583 1.21100 0.82940 0.82622 0.90519 1.90470 1.52643 1.32900 1.74995 1.21536 1.03455 0.99041 0.91214 1.21400 0.97339 0.95509 0.97368 0.93278 1.21670 1.02064 0.98231 0.93065 1.22175 0.96885 0.97073 1.02715 1.22857 0.94609 1.03243 0.82113 1.87918 1.84517 1.33538 1.26937 1.22668 0.95009 0.84924 0.98168 0.75143 0.88840 0.88246 0.91878 0.89046 0.87503 0.90568 0.89822 0.92411 0.87968 0.87648 0.91847 0.92220 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.69 19.25 74.32 1.43 -8.26 16 2 C -0.15 -6.56 10.93 31.13 0.34 -6.22 16 3 C 0.23 10.00 4.91 84.58 0.42 10.42 16 4 N -0.46 -23.08 2.60 -645.43 -1.68 -24.75 16 5 C -0.35 -19.82 9.35 84.04 0.79 -19.03 16 6 H 0.07 4.49 7.36 -2.91 -0.02 4.47 16 7 C 0.00 0.13 4.90 84.93 0.42 0.54 16 8 N -0.87 -45.47 9.39 21.66 0.20 -45.27 16 9 Si 0.98 42.38 29.60 68.60 2.03 44.41 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 C 0.44 21.14 7.30 87.66 0.64 21.78 16 14 O -0.62 -35.07 13.63 -3.06 -0.04 -35.11 16 15 C -0.11 -3.92 3.78 29.85 0.11 -3.81 16 16 C -0.10 -3.18 2.03 -10.70 -0.02 -3.20 16 17 H 0.05 1.94 7.95 -2.39 -0.02 1.92 16 18 C -0.11 -2.58 5.31 30.71 0.16 -2.42 16 19 C -0.15 -3.06 6.14 30.68 0.19 -2.88 16 20 C 0.05 1.07 6.84 72.01 0.49 1.56 16 21 O -0.41 -13.58 10.77 -148.98 -1.60 -15.18 16 22 C 0.07 2.38 5.84 72.01 0.42 2.80 16 23 H 0.23 6.96 7.80 -4.42 -0.03 6.93 16 24 H 0.09 4.32 6.34 -2.39 -0.02 4.31 16 25 H 0.10 3.38 6.68 -2.39 -0.02 3.36 16 26 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 27 H 0.09 3.06 7.50 -2.39 -0.02 3.04 16 28 H 0.11 3.06 7.42 -2.38 -0.02 3.04 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 3.27 6.04 -2.39 -0.01 3.25 16 Total: -1.00 -69.08 296.30 5.35 -63.73 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.06 Total: 20.90 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.38 Total: -8.71 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -1.48 Total: -70.03 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -1.65 Total: -50.29 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.08 5.35 -63.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798802397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.816 kcal (2) G-P(sol) polarization free energy of solvation -69.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds