Wall clock time and date at job start Sun Mar 29 2020 22:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30451 * 125.98508 * 2 1 4 4 N 1.39938 * 108.89641 * 180.22991 * 3 2 1 5 5 C 1.46498 * 125.75443 * 179.72974 * 4 3 2 6 6 C 1.34263 * 108.49153 * 359.75389 * 4 3 2 7 7 C 1.50693 * 126.29391 * 179.97438 * 6 4 3 8 8 C 1.38045 * 107.41665 * 359.97438 * 6 4 3 9 9 C 1.47425 * 126.41601 * 179.97438 * 8 6 4 10 10 O 1.21597 * 120.00227 * 89.73180 * 9 8 6 11 11 N 1.34784 * 120.00099 * 270.00535 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72619 * 11 9 8 13 13 H 1.09002 * 109.47048 * 324.99733 * 12 11 9 14 14 C 1.52995 * 109.47258 * 85.00288 * 12 11 9 15 15 C 1.50700 * 109.46791 * 205.00137 * 12 11 9 16 16 H 1.08003 * 120.00276 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00054 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99850 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99951 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46961 * 89.99990 * 19 17 15 21 21 H 1.48497 * 109.47146 * 209.99690 * 19 17 15 22 22 H 1.48495 * 109.47296 * 330.00194 * 19 17 15 23 23 H 1.09004 * 109.47011 * 270.18103 * 1 2 3 24 24 H 1.08997 * 109.47354 * 30.18235 * 1 2 3 25 25 H 1.08997 * 109.47064 * 150.18612 * 1 2 3 26 26 H 1.08998 * 109.46831 * 270.02121 * 5 4 3 27 27 H 1.08994 * 109.47371 * 30.02773 * 5 4 3 28 28 H 1.09000 * 109.46992 * 150.02693 * 5 4 3 29 29 H 1.09002 * 109.47089 * 270.03969 * 7 6 4 30 30 H 1.08998 * 109.47385 * 30.03296 * 7 6 4 31 31 H 1.08999 * 109.47453 * 150.03968 * 7 6 4 32 32 H 0.97005 * 119.99846 * 359.72407 * 11 9 8 33 33 H 1.09002 * 109.47544 * 59.99749 * 14 12 11 34 34 H 1.09007 * 109.47281 * 179.97438 * 14 12 11 35 35 H 1.09003 * 109.47025 * 299.99449 * 14 12 11 36 36 H 0.96997 * 119.99952 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6444 -0.0053 5 6 4.7786 1.5292 -0.0126 6 6 3.6439 -0.6979 -0.0031 7 6 4.8800 -1.5598 -0.0077 8 6 2.3373 -1.1432 0.0041 9 6 1.8916 -2.5484 0.0083 10 8 1.7179 -3.1281 1.0630 11 7 1.6821 -3.1924 -1.1570 12 6 1.2450 -4.5907 -1.1529 13 1 1.7054 -5.1128 -0.3141 14 6 -0.2777 -4.6487 -1.0161 15 6 1.6589 -5.2501 -2.4432 16 1 2.1936 -4.6842 -3.1917 17 6 1.3540 -6.5758 -2.6688 18 7 0.7024 -7.2648 -1.7576 19 14 1.8664 -7.3929 -4.2685 20 1 3.2176 -7.9882 -4.1096 21 1 0.8929 -8.4600 -4.6132 22 1 1.8962 -6.3803 -5.3542 23 1 -0.3633 0.0032 1.0277 24 1 -0.3634 0.8883 -0.5166 25 1 -0.3633 -0.8916 -0.5109 26 1 5.0631 1.7467 -1.0421 27 1 4.5332 2.4588 0.5007 28 1 5.6082 1.0403 0.4980 29 1 5.1733 -1.7689 -1.0365 30 1 5.6895 -1.0371 0.5017 31 1 4.6713 -2.4971 0.5082 32 1 1.8206 -2.7300 -1.9985 33 1 -0.7381 -4.1266 -1.8549 34 1 -0.6030 -5.6891 -1.0135 35 1 -0.5771 -4.1717 -0.0828 36 1 0.4882 -8.1975 -1.9161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:00 Heat of formation + Delta-G solvation = 2.640326 kcal Electronic energy + Delta-G solvation = -18543.836789 eV Core-core repulsion = 15642.389451 eV Total energy + Delta-G solvation = -2901.447338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44709 -40.09253 -36.64209 -35.25281 -34.27029 -33.05664 -30.84459 -30.48524 -28.31234 -27.30362 -26.58340 -23.85821 -22.00873 -20.79163 -20.47079 -19.02394 -17.74252 -17.29099 -16.87176 -16.59068 -15.97059 -15.60899 -14.94776 -14.64655 -14.45249 -14.31821 -14.18378 -14.03448 -13.62480 -13.40068 -13.36625 -12.98719 -12.88223 -12.84987 -12.81161 -12.71307 -12.23524 -12.12577 -11.79869 -11.08943 -10.81711 -10.55989 -10.14054 -9.74011 -9.50851 -8.14418 -6.31754 0.68409 1.40162 1.46671 1.47680 1.47920 1.58614 1.75476 2.39991 2.76310 3.15964 3.49390 3.58820 3.95425 4.23651 4.26686 4.39545 4.39961 4.59886 4.67474 4.68432 4.78293 4.81993 4.90083 4.96590 4.97800 5.05284 5.13131 5.45473 5.51081 5.63738 5.72306 5.93120 5.98006 6.12586 6.58977 6.75040 6.99190 7.34643 7.56388 8.92008 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.005623 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.969126 B = 4978.110730 C = 5427.711161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.102 3.898 3 N -0.318 5.318 4 N -0.359 5.359 5 C 0.087 3.913 6 C 0.131 3.869 7 C -0.095 4.095 8 C -0.313 4.313 9 C 0.592 3.408 10 O -0.599 6.599 11 N -0.692 5.692 12 C 0.270 3.730 13 H 0.001 0.999 14 C -0.134 4.134 15 C -0.544 4.544 16 H 0.072 0.928 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.261 1.261 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.401 0.599 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.012 0.988 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 16.175 -0.587 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 N -0.141 5.141 4 N -0.139 5.139 5 C -0.052 4.052 6 C -0.002 4.002 7 C -0.153 4.153 8 C -0.328 4.328 9 C 0.377 3.623 10 O -0.481 6.481 11 N -0.339 5.339 12 C 0.167 3.833 13 H 0.018 0.982 14 C -0.193 4.193 15 C -0.582 4.582 16 H 0.090 0.910 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.797 3.203 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.186 1.186 23 H 0.102 0.898 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.261 16.967 0.168 18.872 hybrid contribution -0.049 -1.471 -0.745 1.649 sum 8.211 15.497 -0.577 17.547 Atomic orbital electron populations 1.20282 0.85215 1.04021 1.03805 1.22567 0.97778 0.88727 0.97340 1.76974 0.87078 1.22295 1.27758 1.48487 1.06197 1.04132 1.55087 1.22372 0.83109 0.94333 1.05406 1.21682 0.96252 0.85338 0.96906 1.20657 0.91774 0.97697 1.05142 1.20005 0.93893 0.93386 1.25540 1.17678 0.76050 0.85076 0.83456 1.90691 1.54953 1.69374 1.33112 1.46310 1.66081 1.13910 1.07646 1.18400 0.91562 0.77116 0.96222 0.98152 1.21901 0.98232 1.02055 0.97078 1.21501 1.37740 0.96614 1.02382 0.91007 1.25782 0.94602 0.97650 1.00399 1.70053 1.40082 1.09545 1.35848 0.85340 0.77801 0.78080 0.79069 1.20214 1.20996 1.18560 0.89801 0.88445 0.91198 0.88569 0.88217 0.86603 0.87860 0.86943 0.91548 0.76434 0.94065 0.91352 0.96868 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.28 71.23 0.73 -1.36 16 2 C 0.10 3.36 7.26 43.51 0.32 3.68 16 3 N -0.32 -9.70 12.50 -46.68 -0.58 -10.28 16 4 N -0.36 -8.98 3.98 -354.33 -1.41 -10.39 16 5 C 0.09 1.09 11.24 127.77 1.44 2.52 16 6 C 0.13 3.75 7.01 42.14 0.30 4.04 16 7 C -0.09 -2.06 9.93 71.23 0.71 -1.35 16 8 C -0.31 -11.34 5.88 -20.15 -0.12 -11.46 16 9 C 0.59 26.17 6.94 86.66 0.60 26.78 16 10 O -0.60 -31.95 16.77 -4.02 -0.07 -32.02 16 11 N -0.69 -30.60 5.07 -449.38 -2.28 -32.88 16 12 C 0.27 14.31 2.56 44.24 0.11 14.43 16 13 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 14 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 15 C -0.54 -28.95 8.73 25.60 0.22 -28.72 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 17 C 0.02 0.84 5.30 84.66 0.45 1.29 16 18 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 19 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 2.10 8.01 -2.39 -0.02 2.08 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 0.81 7.02 -2.39 -0.02 0.79 16 29 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.11 1.51 7.05 -2.39 -0.02 1.49 16 31 H 0.07 1.84 7.96 -2.39 -0.02 1.82 16 32 H 0.40 15.65 8.52 -92.70 -0.79 14.86 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 3.84 6.07 -2.38 -0.01 3.82 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -73.61 310.12 3.65 -69.96 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.30 Total: 20.55 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.42 Total: 3.59 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.03 Total: -105.93 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.07 Total: -32.02 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -73.61 3.65 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.598 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds