Wall clock time and date at job start Sun Mar 29 2020 23:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29940 * 126.28450 * 2 1 4 4 O 1.21307 * 110.24874 * 180.02562 * 3 2 1 5 5 C 1.33643 * 109.80976 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54894 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.50250 * 180.10725 * 6 5 4 8 8 C 1.53120 * 109.53813 * 300.20493 * 6 5 4 9 9 C 1.53120 * 109.16082 * 177.61559 * 8 6 5 10 10 C 1.53037 * 109.27865 * 302.34553 * 9 8 6 11 11 N 1.46842 * 109.52367 * 59.17943 * 10 9 8 12 12 C 1.46902 * 111.00276 * 174.16333 * 11 10 9 13 13 C 1.50706 * 109.46577 * 294.21004 * 12 11 10 14 14 H 1.07999 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99426 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47555 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.46814 * 210.00053 * 17 15 13 20 20 H 1.48496 * 109.47318 * 329.99545 * 17 15 13 21 21 C 1.46850 * 111.19788 * 298.25830 * 11 10 9 22 22 N 1.31127 * 106.89935 * 0.23047 * 5 4 3 23 23 H 1.08994 * 109.47643 * 89.97369 * 1 2 3 24 24 H 1.08999 * 109.46770 * 209.97609 * 1 2 3 25 25 H 1.09001 * 109.46727 * 329.96822 * 1 2 3 26 26 H 1.08997 * 109.52123 * 297.52108 * 8 6 5 27 27 H 1.08999 * 109.52091 * 57.64368 * 8 6 5 28 28 H 1.08996 * 109.50458 * 62.29118 * 9 8 6 29 29 H 1.08999 * 109.50108 * 182.36776 * 9 8 6 30 30 H 1.09005 * 109.46004 * 299.16564 * 10 9 8 31 31 H 1.08998 * 109.46199 * 179.20071 * 10 9 8 32 32 H 1.09000 * 109.46894 * 174.21237 * 12 11 10 33 33 H 1.09000 * 109.47263 * 54.20804 * 12 11 10 34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46046 * 181.75569 * 21 11 10 36 36 H 1.08998 * 109.46430 * 301.72103 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 1 4.5467 -2.4978 -0.0028 8 6 5.6194 -1.1040 -1.2493 9 6 6.9313 -1.8926 -1.2117 10 6 7.6903 -1.5498 0.0722 11 7 6.8621 -1.8873 1.2368 12 6 7.6107 -1.7011 2.4870 13 6 8.7437 -2.6930 2.5464 14 1 8.8930 -3.3915 1.7363 15 6 9.5904 -2.7080 3.6346 16 7 9.4095 -1.8564 4.6203 17 14 10.9952 -3.9371 3.7079 18 1 12.2062 -3.3424 3.0875 19 1 11.2813 -4.2777 5.1247 20 1 10.6147 -5.1683 2.9700 21 6 5.6179 -1.1074 1.2474 22 7 2.3031 -1.0841 -0.0047 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5143 26 1 5.0553 -1.3776 -2.1409 27 1 5.8357 -0.0359 -1.2687 28 1 6.7147 -2.9606 -1.2323 29 1 7.5398 -1.6280 -2.0765 30 1 7.9187 -0.4840 0.0855 31 1 8.6183 -2.1204 0.1088 32 1 6.9452 -1.8583 3.3358 33 1 8.0122 -0.6883 2.5227 34 1 10.0054 -1.8668 5.3856 35 1 5.0405 -1.3567 2.1378 36 1 5.8559 -0.0437 1.2553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054341479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:42 Heat of formation + Delta-G solvation = 58.630603 kcal Electronic energy + Delta-G solvation = -18409.319208 eV Core-core repulsion = 15510.299790 eV Total energy + Delta-G solvation = -2899.019417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.54883 -38.63031 -36.05141 -34.39375 -32.87693 -31.82229 -30.43432 -29.08156 -27.08954 -24.45907 -23.71934 -23.21982 -21.84266 -20.71318 -19.26555 -18.03064 -17.31763 -16.30760 -15.71220 -14.98358 -14.43899 -14.27425 -14.08271 -13.75647 -13.59896 -13.43160 -13.09698 -12.67693 -12.34725 -12.22893 -12.02771 -11.50147 -11.28518 -11.17475 -10.94405 -10.83906 -10.72052 -10.53496 -10.40700 -10.16626 -9.99099 -9.60625 -9.21483 -8.46606 -7.34715 -6.05247 -4.06989 1.16481 2.21511 2.85561 3.30712 3.37364 3.41258 3.58946 4.00546 4.40316 4.71960 4.86979 4.90409 5.08111 5.18040 5.22794 5.28352 5.31405 5.51434 5.56840 5.60751 5.78090 5.84315 5.94087 6.03612 6.09923 6.11176 6.17046 6.27807 6.63396 6.68003 7.23467 7.29091 7.74894 8.02610 8.12539 8.18466 8.47420 9.00356 9.57452 11.05684 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.004548 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.452336 B = 6154.786118 C = 6526.544214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.392 5.392 4 O 0.076 5.924 5 C 0.206 3.794 6 C 0.006 3.994 7 H 0.124 0.876 8 C -0.113 4.113 9 C -0.115 4.115 10 C 0.059 3.941 11 N -0.532 5.532 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.062 3.938 22 N -0.487 5.487 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.031 0.969 33 H -0.006 1.006 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 2.773 -11.132 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 N -0.103 5.103 4 O 0.019 5.981 5 C -0.015 4.015 6 C -0.015 4.015 7 H 0.142 0.858 8 C -0.151 4.151 9 C -0.152 4.152 10 C -0.070 4.070 11 N -0.257 5.257 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.068 4.068 22 N -0.221 5.221 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.011 0.989 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.687 2.840 -10.977 17.016 hybrid contribution 1.052 0.270 0.326 1.134 sum -11.635 3.110 -10.652 16.079 Atomic orbital electron populations 1.20102 0.83125 1.04566 1.04054 1.25907 1.00542 0.83809 1.00748 1.74623 0.89526 1.24102 1.22000 1.85282 1.22124 1.25049 1.65628 1.29007 0.96899 0.81831 0.93751 1.20083 0.84870 0.98129 0.98409 0.85824 1.21668 0.96814 1.01256 0.95407 1.21619 0.94827 1.00687 0.98111 1.22032 0.97217 0.98466 0.89236 1.62017 1.04563 1.54091 1.05023 1.19737 0.92678 0.95803 0.84889 1.21138 1.11269 1.17516 1.04770 0.91687 1.24990 0.98004 0.96030 0.95558 1.69958 1.38513 1.36609 1.08682 0.86494 0.82190 0.81530 0.77196 1.20741 1.21282 1.19710 1.22002 0.93348 0.96327 0.95148 1.71937 0.99709 1.29281 1.21196 0.89526 0.89075 0.89655 0.91650 0.91383 0.90856 0.91465 0.95841 0.89293 0.95047 0.98867 0.92878 0.90682 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.01 0.38 -0.16 16 2 C 0.16 2.23 8.22 -156.37 -1.28 0.95 16 3 N -0.39 -5.95 12.16 30.90 0.38 -5.58 16 4 O 0.08 1.17 11.31 18.10 0.20 1.37 16 5 C 0.21 3.03 7.03 -13.06 -0.09 2.94 16 6 C 0.01 0.08 2.82 -91.69 -0.26 -0.18 16 7 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 8 C -0.11 -1.42 5.27 -26.61 -0.14 -1.56 16 9 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 10 C 0.06 1.04 5.29 -3.84 -0.02 1.02 16 11 N -0.53 -10.77 4.65 -236.11 -1.10 -11.87 16 12 C 0.19 4.88 4.72 -4.97 -0.02 4.85 16 13 C -0.51 -13.80 8.43 -34.44 -0.29 -14.09 16 14 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.06 1.06 4.72 -3.83 -0.02 1.04 16 22 N -0.49 -7.33 11.55 -9.87 -0.11 -7.45 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.73 6.70 -51.93 -0.35 1.38 16 32 H 0.03 0.85 7.99 -51.93 -0.41 0.44 16 33 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 35 H 0.07 1.34 8.02 -51.93 -0.42 0.92 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -30.23 300.05 -7.74 -37.97 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -5.34 Total: -4.12 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.01 Total: -5.44 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.23 -7.74 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054341479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.598 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds