Wall clock time and date at job start Sun Mar 29 2020 23:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28649 * 2 1 4 4 O 1.21294 * 110.24985 * 179.73386 * 3 2 1 5 5 C 1.33643 * 109.81343 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55336 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52641 * 59.89657 * 6 5 4 8 8 C 1.53044 * 109.27727 * 182.50895 * 7 6 5 9 9 N 1.46846 * 109.57823 * 59.07987 * 8 7 6 10 10 C 1.46893 * 110.99940 * 174.19258 * 9 8 7 11 11 C 1.50705 * 109.47543 * 294.21149 * 10 9 8 12 12 H 1.07998 * 119.99253 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00295 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99548 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47481 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46848 * 120.00090 * 15 13 11 18 18 H 1.48501 * 109.47108 * 239.99810 * 15 13 11 19 19 C 1.46845 * 111.19746 * 298.29397 * 9 8 7 20 20 C 1.53040 * 109.52693 * 61.73982 * 19 9 8 21 21 N 1.31132 * 106.89433 * 359.97438 * 5 4 3 22 22 H 1.08998 * 109.47436 * 90.02501 * 1 2 3 23 23 H 1.08999 * 109.47253 * 210.02767 * 1 2 3 24 24 H 1.09011 * 109.46848 * 330.02641 * 1 2 3 25 25 H 1.09003 * 109.52607 * 180.02562 * 6 5 4 26 26 H 1.09009 * 109.49922 * 302.38235 * 7 6 5 27 27 H 1.08996 * 109.50568 * 62.49465 * 7 6 5 28 28 H 1.09002 * 109.40489 * 299.06213 * 8 7 6 29 29 H 1.08996 * 109.45037 * 179.12717 * 8 7 6 30 30 H 1.09001 * 109.47020 * 54.21497 * 10 9 8 31 31 H 1.09002 * 109.46989 * 174.20911 * 10 9 8 32 32 H 0.96996 * 120.00275 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.46222 * 301.72515 * 19 9 8 34 34 H 1.09000 * 109.45638 * 181.75190 * 19 9 8 35 35 H 1.08995 * 109.50145 * 180.87733 * 20 19 9 36 36 H 1.08999 * 109.53282 * 60.77926 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 0.0053 5 6 3.5299 -0.6211 0.0098 6 6 4.7969 -1.4369 0.0176 7 6 5.6140 -1.1014 1.2683 8 6 6.9277 -1.8860 1.2391 9 7 7.6829 -1.5361 0.0292 10 6 9.0099 -2.1659 0.0366 11 6 9.8336 -1.5892 1.1592 12 1 9.4132 -0.8304 1.8025 13 6 11.1236 -2.0304 1.3648 14 7 11.6355 -2.9541 0.5811 15 14 12.1446 -1.3150 2.7559 16 1 11.3442 -0.2991 3.4857 17 1 12.5369 -2.4002 3.6906 18 1 13.3641 -0.6775 2.1976 19 6 6.9372 -1.8939 -1.1842 20 6 5.6245 -1.1084 -1.2281 21 7 2.3030 -1.0840 0.0074 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8903 0.5135 25 1 4.5470 -2.4979 0.0194 26 1 5.8295 -0.0330 1.2864 27 1 5.0460 -1.3737 2.1579 28 1 6.7115 -2.9543 1.2361 29 1 7.5185 -1.6375 2.1206 30 1 8.9012 -3.2409 0.1808 31 1 9.5077 -1.9755 -0.9143 32 1 12.5429 -3.2647 0.7260 33 1 6.7210 -2.9622 -1.1758 34 1 7.5352 -1.6512 -2.0626 35 1 5.0642 -1.3858 -2.1209 36 1 5.8397 -0.0401 -1.2507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054347326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:32 Heat of formation + Delta-G solvation = 58.449410 kcal Electronic energy + Delta-G solvation = -18303.659168 eV Core-core repulsion = 15404.631893 eV Total energy + Delta-G solvation = -2899.027274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.59603 -38.61901 -36.10239 -34.61780 -32.73072 -31.49107 -30.53968 -29.24583 -27.24496 -24.78999 -23.51180 -22.78152 -22.03009 -20.82773 -19.26621 -18.07152 -17.37162 -16.30971 -15.74852 -15.04084 -14.40059 -14.33232 -14.07725 -13.79985 -13.63483 -13.37816 -13.13529 -12.73516 -12.38587 -12.08818 -11.88773 -11.57661 -11.43245 -11.10909 -10.95963 -10.92378 -10.68399 -10.59128 -10.40977 -10.30619 -9.81891 -9.71630 -9.18737 -8.45865 -7.29188 -6.04805 -4.06233 1.12554 2.16066 2.81451 3.30280 3.38117 3.42635 3.54866 3.96305 4.40656 4.72400 4.80604 4.88268 4.93122 5.13210 5.19607 5.30861 5.34339 5.49299 5.52351 5.71620 5.75546 5.83969 5.88052 5.91515 5.99787 6.09746 6.28514 6.36506 6.57563 6.63213 7.26392 7.30973 7.77799 8.05580 8.13917 8.15670 8.51181 9.01838 9.58450 11.06085 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.049955 B = 0.004185 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.366465 B = 6689.309706 C = 6965.396373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.392 5.392 4 O 0.080 5.920 5 C 0.205 3.795 6 C 0.003 3.997 7 C -0.112 4.112 8 C 0.067 3.933 9 N -0.537 5.537 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.057 3.943 20 C -0.109 4.109 21 N -0.492 5.492 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.092 0.908 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.681 3.041 -1.702 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.102 5.102 4 O 0.023 5.977 5 C -0.015 4.015 6 C -0.017 4.017 7 C -0.151 4.151 8 C -0.062 4.062 9 N -0.262 5.262 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.071 4.071 20 C -0.148 4.148 21 N -0.226 5.226 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.096 3.957 -1.736 18.605 hybrid contribution 0.634 -0.654 0.661 1.125 sum -17.462 3.302 -1.076 17.804 Atomic orbital electron populations 1.20100 0.83161 1.04480 1.04114 1.25894 1.00523 0.83829 1.00860 1.74636 0.89555 1.24068 1.21912 1.85292 1.22016 1.24913 1.65485 1.29049 0.96780 0.81991 0.93635 1.20136 0.85004 0.97263 0.99341 1.21786 0.96046 1.02806 0.94471 1.21915 0.92399 0.95832 0.96009 1.62056 1.04331 1.60241 0.99613 1.19723 0.83057 0.92271 0.98162 1.21204 0.97617 1.21850 1.13967 0.91703 1.24989 0.97827 0.95159 0.96646 1.69962 1.15711 1.29676 1.38458 0.86458 0.80183 0.78925 0.81962 1.19615 1.21153 1.21024 1.21975 0.93350 0.96282 0.95535 1.21714 0.95702 1.02672 0.94726 1.71928 0.99777 1.29395 1.21522 0.89495 0.89161 0.89655 0.87082 0.90157 0.91533 0.95752 0.88974 0.99006 0.95029 0.92965 0.95560 0.90535 0.91577 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.16 2.10 8.22 -156.38 -1.28 0.82 16 3 N -0.39 -5.69 12.16 30.90 0.38 -5.31 16 4 O 0.08 1.17 11.31 18.10 0.20 1.38 16 5 C 0.21 2.84 7.03 -13.06 -0.09 2.75 16 6 C 0.00 0.04 2.72 -91.65 -0.25 -0.21 16 7 C -0.11 -1.59 5.36 -26.65 -0.14 -1.74 16 8 C 0.07 1.19 5.29 -3.83 -0.02 1.17 16 9 N -0.54 -10.76 4.65 -236.12 -1.10 -11.86 16 10 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 11 C -0.51 -13.77 8.43 -34.44 -0.29 -14.06 16 12 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.06 0.94 5.46 -3.83 -0.02 0.92 16 20 C -0.11 -1.47 5.36 -26.65 -0.14 -1.61 16 21 N -0.49 -6.97 11.55 -9.87 -0.11 -7.08 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.79 6.70 -51.93 -0.35 1.44 16 30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 31 H 0.03 0.84 7.99 -51.93 -0.41 0.43 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -30.21 300.05 -7.72 -37.93 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.34 Total: -4.44 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.99 Total: -5.88 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.10 Total: -49.69 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.21 -7.72 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054347326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.381 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds