Wall clock time and date at job start Sun Mar 29 2020 23:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 125.90535 * 2 1 4 4 C 1.35314 * 107.92328 * 179.71858 * 3 2 1 5 5 C 1.50704 * 126.12634 * 180.27065 * 4 3 2 6 6 N 1.34938 * 107.74729 * 0.42193 * 4 3 2 7 7 C 1.46499 * 126.03888 * 179.84016 * 6 4 3 8 8 C 1.50693 * 109.47285 * 269.71522 * 7 6 4 9 9 O 1.21281 * 120.00095 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00182 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 324.99754 * 11 10 8 13 13 C 1.52997 * 109.47473 * 85.00011 * 11 10 8 14 14 C 1.50708 * 109.47008 * 205.00179 * 11 10 8 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00195 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99968 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46680 * 60.00159 * 18 16 14 20 20 H 1.48492 * 109.47298 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46944 * 300.00675 * 18 16 14 22 22 N 1.30844 * 125.89588 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46967 * 270.00151 * 1 2 3 24 24 H 1.09001 * 109.46695 * 29.99782 * 1 2 3 25 25 H 1.08995 * 109.47258 * 149.99834 * 1 2 3 26 26 H 1.08004 * 126.03425 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.46835 * 270.18401 * 5 4 3 28 28 H 1.08999 * 109.47265 * 30.17603 * 5 4 3 29 29 H 1.08994 * 109.47327 * 150.18356 * 5 4 3 30 30 H 1.09007 * 109.47368 * 149.71813 * 7 6 4 31 31 H 1.09000 * 109.47376 * 29.72165 * 7 6 4 32 32 H 0.96994 * 120.00115 * 0.02562 * 10 8 7 33 33 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 34 34 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 35 35 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 36 36 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3273 1.1329 0.0000 4 6 3.6143 0.7152 0.0063 5 6 4.8352 1.5987 0.0144 6 7 3.6088 -0.6342 0.0007 7 6 4.7899 -1.5009 0.0012 8 6 5.1956 -1.7979 -1.4193 9 8 4.5610 -1.3312 -2.3415 10 7 6.2644 -2.5814 -1.6652 11 6 6.6591 -2.8697 -3.0462 12 1 5.7686 -2.9471 -3.6700 13 6 7.5508 -1.7412 -3.5680 14 6 7.4181 -4.1709 -3.0905 15 1 7.5897 -4.7273 -2.1809 16 6 7.8935 -4.6511 -4.2924 17 7 7.6851 -3.9735 -5.3999 18 14 8.8349 -6.2637 -4.3472 19 1 7.9701 -7.3591 -3.8400 20 1 9.2349 -6.5560 -5.7470 21 1 10.0485 -6.1575 -3.4979 22 7 2.2742 -1.0599 0.0005 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 1.9924 2.1597 -0.0004 27 1 5.1331 1.8160 -1.0114 28 1 4.6059 2.5306 0.5312 29 1 5.6494 1.0886 0.5289 30 1 4.5560 -2.4335 0.5148 31 1 5.6091 -0.9985 0.5156 32 1 6.7722 -2.9544 -0.9277 33 1 8.4413 -1.6637 -2.9442 34 1 7.0017 -0.8001 -3.5359 35 1 7.8448 -1.9559 -4.5954 36 1 8.0198 -4.3111 -6.2455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:39 Heat of formation + Delta-G solvation = 5.231863 kcal Electronic energy + Delta-G solvation = -18245.480080 eV Core-core repulsion = 15344.145120 eV Total energy + Delta-G solvation = -2901.334960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28267 -40.47284 -36.82331 -35.03977 -34.37988 -32.97422 -31.46275 -30.16050 -27.90940 -27.39089 -26.85975 -23.27085 -21.49976 -21.29338 -20.30891 -19.10368 -17.89307 -17.61714 -16.95458 -16.36103 -16.14000 -15.64901 -14.86702 -14.71276 -14.69569 -14.41260 -14.09050 -13.88624 -13.75328 -13.29560 -13.19251 -13.08387 -12.99733 -12.84458 -12.73780 -12.67068 -12.29299 -12.17949 -11.44146 -11.16260 -11.05909 -10.62567 -9.99421 -9.85186 -9.39950 -8.19946 -6.38361 0.85362 1.43926 1.46290 1.49083 1.54291 1.63280 1.87279 2.33768 2.57748 3.10658 3.57777 3.74320 3.85320 4.04399 4.08949 4.27230 4.53897 4.69995 4.71199 4.78292 4.83538 4.87602 4.94652 5.01136 5.04921 5.07927 5.34625 5.37986 5.54753 5.63268 5.79638 5.86151 6.05741 6.10924 6.68783 6.81307 6.85094 7.28275 7.45566 8.86160 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039146 B = 0.004527 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.102813 B = 6183.721950 C = 6407.909767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.058 3.942 3 C -0.291 4.291 4 C 0.086 3.914 5 C -0.091 4.091 6 N -0.366 5.366 7 C 0.118 3.882 8 C 0.482 3.518 9 O -0.592 6.592 10 N -0.697 5.697 11 C 0.272 3.728 12 H -0.010 1.010 13 C -0.131 4.131 14 C -0.549 4.549 15 H 0.077 0.923 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.260 1.260 22 N -0.340 5.340 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.170 0.830 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.410 0.590 33 H 0.046 0.954 34 H 0.010 0.990 35 H 0.064 0.936 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 9.176 15.033 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C -0.320 4.320 4 C -0.041 4.041 5 C -0.149 4.149 6 N -0.148 5.148 7 C -0.007 4.007 8 C 0.268 3.732 9 O -0.473 6.473 10 N -0.347 5.347 11 C 0.168 3.832 12 H 0.008 0.992 13 C -0.190 4.190 14 C -0.587 4.587 15 H 0.095 0.905 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.798 3.202 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.185 1.185 22 N -0.162 5.162 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.187 0.813 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.105 0.895 30 H 0.157 0.843 31 H 0.181 0.819 32 H 0.246 0.754 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.003 8.129 14.179 17.092 hybrid contribution 0.585 -0.268 -0.534 0.836 sum -4.417 7.861 13.645 16.355 Atomic orbital electron populations 1.20269 0.84492 1.03756 1.04026 1.22991 0.98553 0.90830 0.98446 1.21451 0.90872 1.00539 1.19098 1.21760 0.98978 0.84277 0.99054 1.20599 0.92033 0.98751 1.03531 1.48042 1.04577 1.04612 1.57524 1.21690 0.86786 0.98467 0.93733 1.21490 0.80548 0.79013 0.92185 1.90698 1.54971 1.53681 1.47911 1.46183 1.29182 1.48843 1.10506 1.18343 0.92743 0.93927 0.78176 0.99181 1.21868 0.98572 0.95725 1.02814 1.21525 1.36235 1.05957 0.94951 0.90489 1.25827 0.96769 1.01119 0.94912 1.70054 1.46328 1.40130 0.99191 0.85369 0.78983 0.78651 0.77169 1.19716 1.21299 1.18489 1.77232 0.87248 1.24501 1.27259 0.88747 0.88611 0.91859 0.81257 0.91164 0.86841 0.89490 0.84287 0.81936 0.75371 0.93463 0.97055 0.91681 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.45 71.24 0.74 -0.66 16 2 C 0.06 1.76 7.22 43.10 0.31 2.07 16 3 C -0.29 -7.96 10.65 21.99 0.23 -7.73 16 4 C 0.09 2.44 6.93 41.41 0.29 2.72 16 5 C -0.09 -1.78 10.12 71.24 0.72 -1.06 16 6 N -0.37 -11.93 3.10 -338.41 -1.05 -12.97 16 7 C 0.12 3.26 6.73 85.63 0.58 3.83 16 8 C 0.48 19.14 7.86 87.65 0.69 19.83 16 9 O -0.59 -30.51 16.09 -3.03 -0.05 -30.56 16 10 N -0.70 -27.81 5.07 -446.09 -2.26 -30.07 16 11 C 0.27 14.04 2.56 44.25 0.11 14.16 16 12 H -0.01 -0.61 7.58 -2.39 -0.02 -0.63 16 13 C -0.13 -6.55 9.26 71.98 0.67 -5.88 16 14 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 15 H 0.08 3.70 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -52.94 11.32 21.44 0.24 -52.70 16 18 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 22 N -0.34 -12.35 12.58 -47.38 -0.60 -12.94 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.34 7.08 -2.39 -0.02 1.33 16 30 H 0.14 3.26 8.14 -2.38 -0.02 3.24 16 31 H 0.16 2.85 7.04 -2.39 -0.02 2.83 16 32 H 0.41 12.88 8.54 -92.71 -0.79 12.09 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 3.60 6.07 -2.38 -0.01 3.59 16 36 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -77.74 310.37 3.62 -74.12 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.29 Total: 21.45 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.01 Total: -0.02 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.66 Total: -108.68 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -77.74 3.62 -74.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.356 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds