Wall clock time and date at job start Sun Mar 29 2020 23:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47438 * 2 1 4 4 C 1.50693 * 109.47149 * 120.00239 * 2 1 3 5 5 N 1.31136 * 126.55316 * 120.30056 * 4 2 1 6 6 C 1.34494 * 105.61501 * 180.12269 * 5 4 2 7 7 C 1.50707 * 126.28205 * 179.90235 * 6 5 4 8 8 H 1.09001 * 109.87459 * 344.27335 * 7 6 5 9 9 C 1.54322 * 110.00730 * 105.37642 * 7 6 5 10 10 C 1.55154 * 102.94204 * 141.68014 * 9 7 6 11 11 C 1.54910 * 101.58031 * 324.49480 * 10 9 7 12 12 N 1.47019 * 109.87756 * 223.25807 * 7 6 5 13 13 C 1.36932 * 125.65152 * 61.47042 * 12 7 6 14 14 H 1.08001 * 119.99867 * 359.97438 * 13 12 7 15 15 C 1.38814 * 120.00333 * 179.97438 * 13 12 7 16 16 N 1.31623 * 119.99950 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47007 * 90.00170 * 17 15 13 19 19 H 1.48501 * 109.46993 * 210.00274 * 17 15 13 20 20 H 1.48499 * 109.47317 * 330.00050 * 17 15 13 21 21 N 1.29939 * 107.42495 * 359.63930 * 6 5 4 22 22 O 1.21304 * 110.25215 * 0.22823 * 21 6 5 23 23 H 1.09005 * 109.46773 * 299.99908 * 1 2 3 24 24 H 1.08999 * 109.47045 * 59.99318 * 1 2 3 25 25 H 1.08997 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46797 * 240.00583 * 2 1 3 27 27 H 1.09002 * 109.46853 * 300.00176 * 3 2 1 28 28 H 1.09000 * 109.47007 * 59.99801 * 3 2 1 29 29 H 1.08996 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.08999 * 110.71849 * 260.03714 * 9 7 6 31 31 H 1.08995 * 110.72403 * 23.13648 * 9 7 6 32 32 H 1.09002 * 111.00945 * 206.42287 * 10 9 7 33 33 H 1.08999 * 111.00353 * 82.56825 * 10 9 7 34 34 H 1.08998 * 110.36709 * 278.17139 * 11 10 9 35 35 H 1.09005 * 110.36466 * 155.84673 * 11 10 9 36 36 H 0.96997 * 120.00161 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7937 -1.7777 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7895 -3.1932 3.1263 8 1 3.9790 -3.9328 2.3484 9 6 5.1272 -2.6664 3.6870 10 6 5.3291 -3.5218 4.9656 11 6 3.8721 -3.6792 5.4677 12 7 3.0635 -3.8165 4.2426 13 6 1.8390 -4.4235 4.1585 14 1 1.3243 -4.4720 3.2102 15 6 1.2591 -4.9766 5.2919 16 7 1.8860 -4.9171 6.4477 17 14 -0.4117 -5.8041 5.1772 18 1 -0.2301 -7.2456 4.8699 19 1 -1.1254 -5.6599 6.4715 20 1 -1.2079 -5.1646 4.0991 21 7 2.3432 -1.1507 3.2468 22 8 1.7912 -0.3702 2.5000 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 5.9367 -2.8369 2.9773 31 1 5.0510 -1.6080 3.9359 32 1 5.9394 -2.9927 5.6975 33 1 5.7654 -4.4906 4.7226 34 1 3.5660 -2.7952 6.0271 35 1 3.7783 -4.5719 6.0861 36 1 1.4810 -5.3039 7.2397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075573275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:13 Heat of formation + Delta-G solvation = 83.418172 kcal Electronic energy + Delta-G solvation = -18953.709729 eV Core-core repulsion = 16055.765181 eV Total energy + Delta-G solvation = -2897.944548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.90796 -37.65468 -36.13274 -34.74257 -32.58834 -30.93809 -29.40505 -27.92422 -27.36865 -24.68093 -23.88961 -23.19315 -21.11546 -20.22771 -19.07738 -17.39189 -17.03110 -16.64903 -15.74053 -15.02429 -14.64059 -14.31216 -13.84958 -13.41758 -13.04455 -12.38921 -12.21075 -12.15279 -11.94170 -11.78355 -11.61971 -11.51099 -11.26556 -11.09931 -10.98005 -10.85043 -10.52013 -10.40715 -10.14235 -10.01227 -9.83351 -9.59356 -9.18309 -8.67624 -6.97063 -5.70068 -3.13584 1.79763 2.95480 3.30486 3.37697 3.42650 3.45012 4.10902 4.45397 4.72927 4.83319 4.86603 5.09709 5.37249 5.43136 5.47910 5.51344 5.61318 5.62385 5.69192 5.72758 5.78953 5.98401 6.02954 6.08435 6.25082 6.35382 6.44965 6.58125 6.64887 6.72280 6.88745 7.52942 7.59182 7.81983 8.30577 8.93897 9.16147 9.75383 10.38032 11.33125 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.007608 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.251756 B = 3679.286528 C = 4702.077182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.006 3.994 3 C -0.149 4.149 4 C 0.151 3.849 5 N -0.484 5.484 6 C 0.173 3.827 7 C 0.240 3.760 8 H 0.067 0.933 9 C -0.117 4.117 10 C -0.145 4.145 11 C 0.150 3.850 12 N -0.578 5.578 13 C -0.225 4.225 14 H 0.073 0.927 15 C -0.003 4.003 16 N -0.916 5.916 17 Si 0.915 3.085 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.283 1.283 21 N -0.359 5.359 22 O 0.069 5.931 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.015 0.985 35 H 0.111 0.889 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 9.957 -11.075 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 C -0.207 4.207 4 C -0.070 4.070 5 N -0.218 5.218 6 C -0.103 4.103 7 C 0.128 3.872 8 H 0.085 0.915 9 C -0.156 4.156 10 C -0.183 4.183 11 C 0.026 3.974 12 N -0.301 5.301 13 C -0.353 4.353 14 H 0.091 0.909 15 C -0.199 4.199 16 N -0.564 5.564 17 Si 0.745 3.255 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.208 1.208 21 N -0.065 5.065 22 O 0.010 5.990 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.129 0.871 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.169 9.493 -10.155 14.069 hybrid contribution -1.125 -0.215 -0.179 1.160 sum 1.044 9.278 -10.333 13.927 Atomic orbital electron populations 1.21896 0.92658 1.03175 1.03129 1.19667 0.96675 0.95460 0.89673 1.21888 1.01754 0.93859 1.03161 1.28628 0.95652 0.93566 0.89190 1.71862 1.16764 1.12920 1.20304 1.27541 0.99543 0.98813 0.84384 1.19486 0.88909 0.87072 0.91717 0.91500 1.22519 0.95274 0.99576 0.98194 1.23025 1.00557 0.98707 0.96031 1.22039 0.84302 1.02285 0.88759 1.44629 1.19467 1.62642 1.03324 1.18977 0.93129 1.28397 0.94822 0.90934 1.24776 0.98927 1.00994 0.95250 1.69806 1.37750 1.49814 0.98986 0.86067 0.83198 0.79300 0.76900 1.21308 1.21451 1.20844 1.74669 1.11668 1.04100 1.16106 1.85288 1.54949 1.43573 1.15142 0.91521 0.90905 0.91826 0.87250 0.90913 0.91565 0.92008 0.91486 0.92061 0.92020 0.91757 0.96674 0.87139 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.18 37.16 0.34 -1.14 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.15 -1.30 9.18 37.16 0.34 -0.96 16 4 C 0.15 2.56 7.02 -13.06 -0.09 2.46 16 5 N -0.48 -9.68 11.55 -9.87 -0.11 -9.79 16 6 C 0.17 3.89 6.63 -156.38 -1.04 2.85 16 7 C 0.24 5.44 3.66 -68.10 -0.25 5.19 16 8 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 9 C -0.12 -2.23 6.47 -24.90 -0.16 -2.39 16 10 C -0.14 -2.83 7.08 -24.58 -0.17 -3.00 16 11 C 0.15 3.78 5.89 -2.53 -0.01 3.77 16 12 N -0.58 -15.34 3.11 -163.87 -0.51 -15.85 16 13 C -0.23 -6.51 9.95 -15.06 -0.15 -6.66 16 14 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 15 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 16 N -0.92 -27.11 10.09 55.49 0.56 -26.55 16 17 Si 0.92 22.81 29.55 -169.99 -5.02 17.79 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 N -0.36 -8.29 12.15 30.90 0.38 -7.92 16 22 O 0.07 1.34 11.31 18.11 0.20 1.54 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 3.05 5.87 -51.93 -0.30 2.74 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -32.71 300.58 -6.91 -39.62 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.33 Total: -3.05 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.60 Total: -0.32 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.31 Total: -60.11 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.71 -6.91 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075573275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.043 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds