Wall clock time and date at job start Sun Mar 29 2020 23:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47438 * 2 1 4 4 C 1.50693 * 109.47149 * 120.00239 * 2 1 3 5 5 N 1.31136 * 126.55316 * 120.30056 * 4 2 1 6 6 C 1.34494 * 105.61501 * 180.12269 * 5 4 2 7 7 C 1.50707 * 126.28205 * 179.90235 * 6 5 4 8 8 H 1.09001 * 109.87459 * 344.27335 * 7 6 5 9 9 C 1.54322 * 110.00730 * 105.37642 * 7 6 5 10 10 C 1.55154 * 102.94204 * 141.68014 * 9 7 6 11 11 C 1.54910 * 101.58031 * 324.49480 * 10 9 7 12 12 N 1.47019 * 109.87756 * 223.25807 * 7 6 5 13 13 C 1.36932 * 125.65152 * 61.47042 * 12 7 6 14 14 H 1.08001 * 119.99867 * 359.97438 * 13 12 7 15 15 C 1.38814 * 120.00333 * 179.97438 * 13 12 7 16 16 N 1.31623 * 119.99950 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47007 * 90.00170 * 17 15 13 19 19 H 1.48501 * 109.46993 * 210.00274 * 17 15 13 20 20 H 1.48499 * 109.47317 * 330.00050 * 17 15 13 21 21 N 1.29939 * 107.42495 * 359.63930 * 6 5 4 22 22 O 1.21304 * 110.25215 * 0.22823 * 21 6 5 23 23 H 1.09005 * 109.46773 * 299.99908 * 1 2 3 24 24 H 1.08999 * 109.47045 * 59.99318 * 1 2 3 25 25 H 1.08997 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46797 * 240.00583 * 2 1 3 27 27 H 1.09002 * 109.46853 * 300.00176 * 3 2 1 28 28 H 1.09000 * 109.47007 * 59.99801 * 3 2 1 29 29 H 1.08996 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.08999 * 110.71849 * 260.03714 * 9 7 6 31 31 H 1.08995 * 110.72403 * 23.13648 * 9 7 6 32 32 H 1.09002 * 111.00945 * 206.42287 * 10 9 7 33 33 H 1.08999 * 111.00353 * 82.56825 * 10 9 7 34 34 H 1.08998 * 110.36709 * 278.17139 * 11 10 9 35 35 H 1.09005 * 110.36466 * 155.84673 * 11 10 9 36 36 H 0.96997 * 120.00161 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7937 -1.7777 1.2598 6 6 2.9816 -2.0525 2.5629 7 6 3.7895 -3.1932 3.1263 8 1 3.9790 -3.9328 2.3484 9 6 5.1272 -2.6664 3.6870 10 6 5.3291 -3.5218 4.9656 11 6 3.8721 -3.6792 5.4677 12 7 3.0635 -3.8165 4.2426 13 6 1.8390 -4.4235 4.1585 14 1 1.3243 -4.4720 3.2102 15 6 1.2591 -4.9766 5.2919 16 7 1.8860 -4.9171 6.4477 17 14 -0.4117 -5.8041 5.1772 18 1 -0.2301 -7.2456 4.8699 19 1 -1.1254 -5.6599 6.4715 20 1 -1.2079 -5.1646 4.0991 21 7 2.3432 -1.1507 3.2468 22 8 1.7912 -0.3702 2.5000 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 5.9367 -2.8369 2.9773 31 1 5.0510 -1.6080 3.9359 32 1 5.9394 -2.9927 5.6975 33 1 5.7654 -4.4906 4.7226 34 1 3.5660 -2.7952 6.0271 35 1 3.7783 -4.5719 6.0861 36 1 1.4810 -5.3039 7.2397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075573275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:12 Heat of formation + Delta-G solvation = 60.976843 kcal Electronic energy + Delta-G solvation = -18954.682858 eV Core-core repulsion = 16055.765181 eV Total energy + Delta-G solvation = -2898.917677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.51427 -39.45780 -37.23333 -36.25112 -34.62763 -32.44229 -31.36179 -29.71880 -28.10008 -26.72411 -25.17863 -24.86334 -22.57520 -22.01200 -20.67266 -18.99691 -18.89249 -18.33132 -17.20210 -16.63950 -16.41880 -15.80325 -15.25898 -14.82123 -14.24468 -13.98078 -13.88087 -13.62869 -13.31575 -13.17616 -13.06813 -12.92920 -12.79214 -12.65301 -12.34538 -12.13585 -12.11889 -12.03593 -11.93878 -11.82194 -11.60751 -11.47638 -10.89433 -10.70220 -9.07496 -7.87442 -5.34078 0.34013 1.31655 1.37448 1.39599 1.47640 2.02353 2.38353 2.69368 3.18438 3.29844 3.63040 3.85836 3.92015 4.00149 4.04070 4.11384 4.23997 4.47814 4.60655 4.74417 4.77808 4.78496 4.89293 4.91570 4.93085 5.05299 5.09033 5.17070 5.24332 5.30953 5.33724 5.34788 5.60297 5.72396 6.21231 6.99827 7.38849 7.64098 8.27006 9.13555 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.007608 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.251756 B = 3679.286528 C = 4702.077182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.005 3.995 3 C -0.144 4.144 4 C 0.171 3.829 5 N -0.505 5.505 6 C 0.160 3.840 7 C 0.230 3.770 8 H 0.066 0.934 9 C -0.104 4.104 10 C -0.127 4.127 11 C 0.152 3.848 12 N -0.597 5.597 13 C -0.238 4.238 14 H 0.062 0.938 15 C -0.056 4.056 16 N -0.940 5.940 17 Si 0.977 3.023 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.281 1.281 21 N -0.398 5.398 22 O 0.068 5.932 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.045 0.955 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.078 0.922 34 H -0.019 1.019 35 H 0.082 0.918 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 11.003 -13.170 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 C -0.201 4.201 4 C -0.050 4.050 5 N -0.239 5.239 6 C -0.116 4.116 7 C 0.120 3.880 8 H 0.084 0.916 9 C -0.143 4.143 10 C -0.166 4.166 11 C 0.028 3.972 12 N -0.320 5.320 13 C -0.367 4.367 14 H 0.080 0.920 15 C -0.249 4.249 16 N -0.588 5.588 17 Si 0.805 3.195 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.206 1.206 21 N -0.106 5.106 22 O 0.010 5.990 23 H 0.079 0.921 24 H 0.129 0.871 25 H 0.064 0.936 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.097 0.903 34 H -0.001 1.001 35 H 0.100 0.900 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.344 10.549 -12.288 16.364 hybrid contribution -1.207 -0.454 0.356 1.338 sum 1.137 10.096 -11.932 15.671 Atomic orbital electron populations 1.21930 0.91344 1.02563 1.04781 1.20157 0.97604 0.96598 0.87177 1.21906 1.01504 0.92003 1.04732 1.29890 0.93184 0.92245 0.89676 1.71844 1.18489 1.14475 1.19053 1.27357 0.99830 0.98940 0.85426 1.19679 0.90236 0.87209 0.90866 0.91604 1.22508 0.94371 0.98954 0.98444 1.22897 0.96914 1.00067 0.96704 1.21838 0.87819 0.99254 0.88304 1.44788 1.19187 1.63299 1.04748 1.19117 0.94383 1.28708 0.94502 0.92047 1.25577 1.02372 1.01956 0.95019 1.70034 1.38911 1.50551 0.99304 0.85114 0.79078 0.78639 0.76674 1.20178 1.21363 1.20649 1.74648 1.12969 1.05189 1.17753 1.85229 1.54658 1.42989 1.16093 0.92112 0.87059 0.93559 0.85602 0.87351 0.92014 0.92436 0.87675 0.92408 0.89217 0.90347 1.00145 0.90009 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 71.98 0.66 -1.87 16 2 C 0.00 0.10 3.39 -11.54 -0.04 0.06 16 3 C -0.14 -2.05 9.18 71.98 0.66 -1.39 16 4 C 0.17 5.61 7.02 88.38 0.62 6.23 16 5 N -0.50 -19.96 11.55 -303.21 -3.50 -23.46 16 6 C 0.16 7.24 6.63 138.47 0.92 8.16 16 7 C 0.23 10.49 3.66 44.60 0.16 10.65 16 8 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 9 C -0.10 -3.81 6.47 31.78 0.21 -3.61 16 10 C -0.13 -4.83 7.08 31.99 0.23 -4.61 16 11 C 0.15 7.87 5.89 86.86 0.51 8.38 16 12 N -0.60 -32.47 3.11 -672.38 -2.09 -34.56 16 13 C -0.24 -14.17 9.95 84.03 0.84 -13.33 16 14 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 15 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 16 N -0.94 -57.36 10.09 21.65 0.22 -57.14 16 17 Si 0.98 47.73 29.55 68.60 2.03 49.75 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 N -0.40 -18.68 12.15 -60.32 -0.73 -19.41 16 22 O 0.07 2.66 11.31 74.87 0.85 3.51 16 23 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 32 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 35 H 0.08 4.69 5.87 -2.38 -0.01 4.67 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -73.90 300.58 3.05 -70.84 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.06 Total: 4.62 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.23 Total: 5.84 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -6.11 Total: -134.57 kcal Atomic # 8 Polarization: 2.66 SS G_CDS: 0.85 Total: 3.51 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -73.90 3.05 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075573275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.820 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds