Wall clock time and date at job start Sun Mar 29 2020 23:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31136 * 126.54917 * 2 1 4 4 C 1.34488 * 105.60969 * 179.91730 * 3 2 1 5 5 C 1.50701 * 126.28463 * 180.12905 * 4 3 2 6 6 N 1.46902 * 109.47196 * 270.23987 * 5 4 3 7 7 C 1.46894 * 111.00211 * 170.00139 * 6 5 4 8 8 C 1.50698 * 109.46981 * 284.10197 * 7 6 5 9 9 H 1.08000 * 119.99980 * 4.94373 * 8 7 6 10 10 C 1.37884 * 120.00015 * 184.94146 * 8 7 6 11 11 N 1.31512 * 119.99773 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99906 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47124 * 90.00066 * 12 10 8 14 14 H 1.48500 * 109.46738 * 209.99821 * 12 10 8 15 15 H 1.48500 * 109.47004 * 329.99985 * 12 10 8 16 16 C 1.46907 * 110.99572 * 293.95426 * 6 5 4 17 17 C 1.52998 * 109.46952 * 163.82820 * 16 6 5 18 18 C 1.52995 * 117.49784 * 245.45902 * 17 16 6 19 19 C 1.53000 * 117.49816 * 176.79958 * 17 16 6 20 20 N 1.29943 * 107.42960 * 0.35266 * 4 3 2 21 21 O 1.21299 * 110.24799 * 359.77762 * 20 4 3 22 22 H 1.08990 * 109.46797 * 179.70945 * 1 2 3 23 23 H 1.08994 * 109.47252 * 299.71462 * 1 2 3 24 24 H 1.09006 * 109.46679 * 59.71405 * 1 2 3 25 25 H 1.09000 * 109.47525 * 30.23934 * 5 4 3 26 26 H 1.08999 * 109.47556 * 150.23797 * 5 4 3 27 27 H 1.09006 * 109.47569 * 44.10269 * 7 6 5 28 28 H 1.09002 * 109.47783 * 164.09954 * 7 6 5 29 29 H 0.97002 * 119.99442 * 179.97438 * 11 10 8 30 30 H 1.09000 * 109.47054 * 283.82058 * 16 6 5 31 31 H 1.08996 * 109.47603 * 43.82446 * 16 6 5 32 32 H 1.09004 * 115.55465 * 31.12890 * 17 16 6 33 33 H 1.09005 * 117.49968 * 359.97438 * 18 17 16 34 34 H 1.09002 * 117.50402 * 145.01665 * 18 17 16 35 35 H 1.09000 * 117.49722 * 214.97331 * 19 17 16 36 36 H 1.08993 * 117.49984 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5728 0.0019 5 6 4.8112 1.3887 0.0054 6 7 5.2225 1.6604 -1.3785 7 6 6.3117 2.6451 -1.4203 8 6 5.7545 4.0216 -1.1637 9 1 4.7122 4.1433 -0.9084 10 6 6.5754 5.1256 -1.2547 11 7 6.0890 6.3269 -1.0313 12 14 8.3782 4.9152 -1.6969 13 1 8.5374 4.9842 -3.1717 14 1 9.1730 5.9970 -1.0620 15 1 8.8570 3.5971 -1.2084 16 6 5.6069 0.4206 -2.0664 17 6 5.6373 0.6637 -3.5766 18 6 4.6156 -0.0863 -4.4336 19 6 6.0909 -0.4931 -4.4694 20 7 3.4645 -0.7241 -0.0047 21 8 2.3029 -1.0735 -0.0059 22 1 -0.3632 -1.0276 -0.0052 23 1 -0.3633 0.5094 0.8925 24 1 -0.3633 0.5183 -0.8875 25 1 4.6351 2.3312 0.5237 26 1 5.5986 0.8347 0.5163 27 1 7.0497 2.4034 -0.6553 28 1 6.7851 2.6219 -2.4018 29 1 6.6667 7.1035 -1.0950 30 1 6.5954 0.1091 -1.7286 31 1 4.8822 -0.3611 -1.8387 32 1 5.9082 1.6735 -3.8849 33 1 3.9220 -0.7533 -3.9215 34 1 4.2145 0.4298 -5.3058 35 1 6.6598 -0.2443 -5.3652 36 1 6.3680 -1.4271 -3.9808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078993161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:51 Heat of formation + Delta-G solvation = 79.229777 kcal Electronic energy + Delta-G solvation = -18540.971523 eV Core-core repulsion = 15642.845353 eV Total energy + Delta-G solvation = -2898.126170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.61101 -39.56964 -37.51072 -36.53909 -34.83689 -34.18672 -30.45773 -29.65202 -29.31593 -26.10236 -24.47823 -23.39686 -23.14581 -22.02189 -21.06063 -19.26787 -19.04254 -18.43068 -16.92980 -16.77968 -16.42870 -15.80392 -15.70111 -14.87889 -14.71331 -14.43046 -14.31593 -14.15304 -13.84969 -13.53687 -13.35046 -12.88480 -12.62440 -12.51511 -12.44374 -12.44003 -12.09432 -12.00458 -11.90294 -11.51342 -11.24550 -10.93512 -10.82766 -10.76003 -9.19680 -8.27633 -6.31244 0.18284 1.18490 1.34714 1.35887 1.46590 1.97850 2.33936 2.62829 2.80104 3.01710 3.06684 3.23637 3.78480 3.92717 3.98051 4.12011 4.24926 4.38156 4.46539 4.55714 4.59730 4.67098 4.67677 4.70941 4.74005 4.81885 4.93404 4.97516 5.10362 5.18011 5.20746 5.29164 5.51261 5.89790 6.15360 6.55206 6.75107 7.21977 7.31395 8.89300 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.006973 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.203833 B = 4014.683466 C = 5005.802068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.183 3.817 3 N -0.508 5.508 4 C 0.180 3.820 5 C 0.152 3.848 6 N -0.532 5.532 7 C 0.178 3.822 8 C -0.514 4.514 9 H 0.035 0.965 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.945 3.055 13 H -0.265 1.265 14 H -0.281 1.281 15 H -0.250 1.250 16 C 0.085 3.915 17 C -0.168 4.168 18 C -0.171 4.171 19 C -0.158 4.158 20 N -0.399 5.399 21 O 0.078 5.922 22 H 0.128 0.872 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.062 0.938 27 H -0.005 1.005 28 H 0.038 0.962 29 H 0.267 0.733 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -17.325 -1.447 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.037 4.037 3 N -0.242 5.242 4 C -0.093 4.093 5 C 0.023 3.977 6 N -0.258 5.258 7 C 0.051 3.949 8 C -0.553 4.553 9 H 0.053 0.947 10 C -0.187 4.187 11 N -0.587 5.587 12 Si 0.768 3.232 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.174 1.174 16 C -0.043 4.043 17 C -0.186 4.186 18 C -0.208 4.208 19 C -0.195 4.195 20 N -0.108 5.108 21 O 0.019 5.981 22 H 0.147 0.853 23 H 0.136 0.864 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.013 0.987 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.754 -17.020 -1.680 18.388 hybrid contribution 1.234 0.402 0.406 1.360 sum -5.520 -16.618 -1.274 17.557 Atomic orbital electron populations 1.20754 0.76074 1.07831 1.06777 1.29968 1.00574 0.79448 0.93666 1.71939 1.00797 1.30430 1.21064 1.25643 0.95486 0.88012 1.00138 1.20102 0.88431 0.97533 0.91653 1.61702 1.40321 1.10423 1.13327 1.19959 0.88609 0.90136 0.96181 1.21199 0.96726 0.90652 1.46704 0.94670 1.25810 1.03513 0.94501 0.94828 1.70055 1.38030 0.99145 1.51461 0.85754 0.79299 0.78877 0.79269 1.18970 1.20622 1.17402 1.21719 0.98677 0.91174 0.92707 1.22201 1.06706 0.97487 0.92228 1.22966 0.92605 1.03160 1.02105 1.23051 0.96871 0.98169 1.01438 1.74564 0.98574 1.15300 1.22365 1.85203 1.11063 1.36031 1.65845 0.85344 0.86404 0.86915 0.89306 0.91980 0.98733 0.94401 0.92401 0.94570 0.91225 0.89193 0.89437 0.88293 0.87265 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.18 4.68 8.51 88.38 0.75 5.43 16 3 N -0.51 -18.41 11.55 -303.23 -3.50 -21.92 16 4 C 0.18 6.85 6.89 138.47 0.95 7.80 16 5 C 0.15 6.35 5.41 85.56 0.46 6.81 16 6 N -0.53 -23.55 4.37 -905.36 -3.96 -27.50 16 7 C 0.18 8.69 3.61 85.56 0.31 9.00 16 8 C -0.51 -30.38 9.17 25.60 0.23 -30.15 16 9 H 0.03 2.36 7.91 -2.91 -0.02 2.33 16 10 C 0.01 0.64 5.47 84.66 0.46 1.11 16 11 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 12 Si 0.94 44.23 27.37 68.60 1.88 46.10 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.25 -10.92 6.69 99.48 0.67 -10.25 16 16 C 0.09 3.13 5.11 86.30 0.44 3.57 16 17 C -0.17 -5.68 5.58 -10.80 -0.06 -5.74 16 18 C -0.17 -4.82 10.18 30.62 0.31 -4.51 16 19 C -0.16 -4.00 10.25 30.62 0.31 -3.68 16 20 N -0.40 -13.51 11.05 -60.36 -0.67 -14.18 16 21 O 0.08 2.17 11.31 74.91 0.85 3.02 16 22 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.09 4.15 7.33 -2.39 -0.02 4.14 16 26 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 27 H 0.00 -0.24 7.40 -2.38 -0.02 -0.26 16 28 H 0.04 1.81 5.62 -2.39 -0.01 1.80 16 29 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.07 2.51 5.82 -2.39 -0.01 2.49 16 32 H 0.09 3.49 6.89 -2.39 -0.02 3.47 16 33 H 0.09 2.42 8.04 -2.38 -0.02 2.40 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -73.76 303.53 0.86 -72.89 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.03 Total: 11.44 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.93 Total: -10.27 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -7.83 Total: -123.19 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.10 kcal Total: -73.76 0.86 -72.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078993161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.124 kcal (2) G-P(sol) polarization free energy of solvation -73.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds