Wall clock time and date at job start Sun Mar 29 2020 23:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30276 * 126.28044 * 2 1 4 4 N 1.28663 * 109.37826 * 180.02562 * 3 2 1 5 5 C 1.30277 * 109.38442 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.28441 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46787 * 84.73716 * 6 5 4 8 8 C 1.46902 * 110.99526 * 199.50734 * 7 6 5 9 9 C 1.50704 * 109.47005 * 170.00580 * 8 7 6 10 10 H 1.08005 * 120.00050 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00002 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00139 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00046 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47259 * 59.99132 * 13 11 9 15 15 H 1.48493 * 109.47184 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46803 * 299.99527 * 13 11 9 17 17 C 1.46899 * 110.99892 * 75.55957 * 7 6 5 18 18 C 1.53002 * 109.47471 * 58.50195 * 17 7 6 19 19 C 1.52996 * 117.49843 * 245.80480 * 18 17 7 20 20 C 1.52997 * 117.49875 * 177.14392 * 18 17 7 21 21 O 1.34362 * 126.28146 * 180.28828 * 2 1 3 22 22 H 1.08999 * 109.46874 * 89.97669 * 1 2 3 23 23 H 1.08995 * 109.47146 * 209.97515 * 1 2 3 24 24 H 1.08997 * 109.47252 * 329.97584 * 1 2 3 25 25 H 1.09004 * 109.46637 * 324.74182 * 6 5 4 26 26 H 1.08997 * 109.46917 * 204.73847 * 6 5 4 27 27 H 1.09000 * 109.47502 * 290.00239 * 8 7 6 28 28 H 1.08996 * 109.47522 * 50.00604 * 8 7 6 29 29 H 0.97002 * 120.00249 * 179.97438 * 12 11 9 30 30 H 1.08998 * 109.47187 * 298.50018 * 17 7 6 31 31 H 1.09000 * 109.47031 * 178.50520 * 17 7 6 32 32 H 1.09000 * 115.54465 * 31.47838 * 18 17 7 33 33 H 1.08992 * 117.50327 * 0.02562 * 19 18 17 34 34 H 1.09003 * 117.49365 * 145.02538 * 19 18 17 35 35 H 1.09005 * 117.49676 * 214.98113 * 20 18 17 36 36 H 1.08998 * 117.50348 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0014 7 7 5.2965 -1.6304 1.3774 8 6 6.7122 -2.0221 1.3992 9 6 7.2329 -1.9452 2.8114 10 1 6.5778 -1.6358 3.6124 11 6 8.5458 -2.2687 3.0805 12 7 9.3436 -2.6450 2.1051 13 14 9.1915 -2.1727 4.8308 14 1 8.4105 -3.0913 5.6977 15 1 10.6225 -2.5688 4.8529 16 1 9.0545 -0.7820 5.3332 17 6 4.4704 -2.6009 2.1079 18 6 4.5004 -3.9464 1.3800 19 6 3.1918 -4.4460 0.7646 20 6 3.7503 -5.1144 2.0233 21 8 2.3021 -1.0831 -0.0054 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 5.5859 -0.9687 -0.5955 26 1 4.5999 -2.4416 -0.4310 27 1 6.8125 -3.0428 1.0302 28 1 7.2857 -1.3478 0.7633 29 1 10.2675 -2.8723 2.2944 30 1 3.4438 -2.2384 2.1592 31 1 4.8627 -2.7250 3.1172 32 1 5.4251 -4.1732 0.8494 33 1 2.3096 -3.8160 0.8778 34 1 3.2557 -5.0019 -0.1708 35 1 4.1813 -6.1098 1.9154 36 1 3.2358 -4.9246 2.9653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:26 Heat of formation + Delta-G solvation = 68.099795 kcal Electronic energy + Delta-G solvation = -18644.018182 eV Core-core repulsion = 15745.409379 eV Total energy + Delta-G solvation = -2898.608802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.92733 -38.31686 -35.86804 -35.41194 -33.09787 -32.33921 -29.47361 -27.34079 -26.70698 -24.42018 -22.43146 -22.24539 -21.92982 -21.71203 -19.39326 -17.22598 -16.83009 -16.36328 -15.67668 -15.08936 -14.78174 -14.53345 -14.11631 -14.00513 -13.48543 -13.27357 -12.86729 -12.23092 -12.13128 -11.91907 -11.69572 -11.59758 -11.34995 -11.26055 -11.07186 -10.78311 -10.70738 -10.59232 -10.16093 -9.91622 -9.55303 -9.37336 -9.15179 -8.48296 -7.48594 -6.07624 -4.08694 1.39456 2.48585 2.67231 3.32417 3.36565 3.39976 4.03625 4.09001 4.39798 4.61314 4.79392 5.00202 5.03906 5.11518 5.22770 5.29030 5.32984 5.35564 5.56735 5.63020 5.75225 5.82100 5.84138 5.85748 5.98902 6.07414 6.21300 6.30960 6.36411 6.72271 7.09860 7.19862 7.66848 7.90111 8.03285 8.38327 8.60924 8.96506 9.55277 11.03145 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.006075 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.416830 B = 4607.649575 C = 5253.418571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.139 3.861 3 N -0.291 5.291 4 N -0.280 5.280 5 C 0.196 3.804 6 C 0.141 3.859 7 N -0.523 5.523 8 C 0.193 3.807 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.092 3.908 18 C -0.176 4.176 19 C -0.188 4.188 20 C -0.174 4.174 21 O -0.227 6.227 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.004 0.996 28 H 0.036 0.964 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 -2.056 -4.591 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 N -0.139 5.139 4 N -0.126 5.126 5 C -0.016 4.016 6 C 0.011 3.989 7 N -0.247 5.247 8 C 0.069 3.931 9 C -0.546 4.546 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.537 5.537 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.036 4.036 18 C -0.196 4.196 19 C -0.225 4.225 20 C -0.212 4.212 21 O -0.106 6.106 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.052 -0.405 -4.393 15.685 hybrid contribution 0.159 -1.987 0.525 2.061 sum -14.893 -2.392 -3.868 15.572 Atomic orbital electron populations 1.20240 0.80804 1.05310 1.04707 1.27857 0.97673 0.80258 1.01421 1.74365 0.96523 1.25918 1.17142 1.74414 1.11284 1.09579 1.17342 1.28340 0.84657 0.91580 0.97022 1.20587 0.87169 0.96323 0.94864 1.62274 1.06522 1.46865 1.09066 1.19853 0.79630 0.94936 0.98644 1.21022 0.95622 1.44964 0.92976 0.91903 1.24933 0.96737 0.95238 0.97379 1.69929 1.06325 1.45831 1.31594 0.86552 0.77663 0.78624 0.84553 1.20285 1.21332 1.20111 1.21769 0.96197 0.86665 0.99016 1.23153 0.95835 0.96903 1.03696 1.23017 0.97900 1.04527 0.97030 1.22810 1.04431 0.97304 0.96668 1.84789 1.17947 1.38188 1.69726 0.88821 0.89263 0.87919 0.86785 0.91429 0.97821 0.94646 0.92779 0.93134 0.88801 0.87022 0.89312 0.89558 0.89252 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.14 1.97 8.48 -12.94 -0.11 1.86 16 3 N -0.29 -5.13 12.22 32.55 0.40 -4.74 16 4 N -0.28 -5.48 12.22 32.55 0.40 -5.09 16 5 C 0.20 3.48 7.36 -12.94 -0.10 3.38 16 6 C 0.14 2.48 5.49 -4.97 -0.03 2.46 16 7 N -0.52 -10.86 4.62 -237.51 -1.10 -11.96 16 8 C 0.19 4.71 4.56 -4.97 -0.02 4.69 16 9 C -0.51 -13.72 8.44 -34.44 -0.29 -14.01 16 10 H 0.06 1.70 7.14 -52.48 -0.37 1.33 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 13 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.09 1.72 5.34 -3.82 -0.02 1.70 16 18 C -0.18 -2.93 3.98 -90.62 -0.36 -3.29 16 19 C -0.19 -2.56 9.89 -26.70 -0.26 -2.83 16 20 C -0.17 -2.48 10.25 -26.69 -0.27 -2.75 16 21 O -0.23 -3.56 10.82 5.38 0.06 -3.50 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.11 1.97 7.74 -51.93 -0.40 1.57 16 26 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 27 H 0.00 0.10 6.12 -51.93 -0.32 -0.21 16 28 H 0.04 0.93 7.83 -51.93 -0.41 0.52 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.05 0.90 7.37 -51.93 -0.38 0.52 16 31 H 0.09 1.93 6.73 -51.93 -0.35 1.58 16 32 H 0.11 2.07 6.29 -51.93 -0.33 1.74 16 33 H 0.09 1.18 8.04 -51.93 -0.42 0.77 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -31.03 304.53 -6.10 -37.13 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.98 Total: -0.41 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.18 Total: -7.31 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.43 Total: -46.82 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.06 Total: -3.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.03 -6.10 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.232 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds