Wall clock time and date at job start Sun Mar 29 2020 23:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46996 * 2 1 4 4 C 1.39667 * 126.06996 * 125.00114 * 3 2 1 5 5 C 1.38400 * 105.36047 * 179.97438 * 4 3 2 6 6 C 1.47167 * 126.88662 * 179.97438 * 5 4 3 7 7 O 1.21627 * 120.00115 * 185.69041 * 6 5 4 8 8 N 1.34780 * 119.99634 * 5.68628 * 6 5 4 9 9 C 1.46503 * 119.99548 * 185.17758 * 8 6 5 10 10 H 1.08994 * 109.47300 * 324.99921 * 9 8 6 11 11 C 1.52996 * 109.47322 * 85.00575 * 9 8 6 12 12 C 1.50703 * 109.46731 * 205.00326 * 9 8 6 13 13 H 1.07997 * 120.00324 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99867 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00327 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00030 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.46820 * 90.00660 * 16 14 12 18 18 H 1.48506 * 109.46991 * 210.00327 * 16 14 12 19 19 H 1.48493 * 109.47279 * 330.00587 * 16 14 12 20 20 N 1.36599 * 106.23280 * 0.02562 * 5 4 3 21 21 C 1.46505 * 125.19020 * 180.26227 * 20 5 4 22 22 N 1.28442 * 109.61544 * 359.97438 * 20 5 4 23 23 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47111 * 299.99700 * 1 2 3 25 25 H 1.08992 * 109.47384 * 59.99775 * 1 2 3 26 26 H 1.08996 * 109.46971 * 239.99722 * 2 1 3 27 27 H 1.09003 * 109.46880 * 120.00136 * 2 1 3 28 28 H 1.08006 * 127.32090 * 0.02562 * 4 3 2 29 29 H 0.96996 * 120.00188 * 5.17953 * 8 6 5 30 30 H 1.08997 * 109.47278 * 59.98946 * 11 9 8 31 31 H 1.08996 * 109.47199 * 180.02562 * 11 9 8 32 32 H 1.09006 * 109.46801 * 299.99382 * 11 9 8 33 33 H 0.96998 * 120.00724 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46639 * 265.74374 * 21 20 5 35 35 H 1.08996 * 109.46906 * 25.74840 * 21 20 5 36 36 H 1.09003 * 109.46713 * 145.75029 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9169 1.9803 0.9247 5 6 3.0842 3.2942 0.5235 6 6 3.9246 4.3150 1.1697 7 8 3.9004 5.4639 0.7713 8 7 4.7210 3.9766 2.2030 9 6 5.4711 5.0115 2.9191 10 1 5.7837 5.7848 2.2174 11 6 4.5815 5.6315 3.9984 12 6 6.6869 4.3960 3.5626 13 1 6.8812 3.3396 3.4499 14 6 7.5507 5.1813 4.2962 15 7 8.6114 4.6442 4.8583 16 14 7.2143 7.0084 4.4918 17 1 6.3804 7.2316 5.7001 18 1 8.5009 7.7358 4.6369 19 1 6.4944 7.5102 3.2939 20 7 2.3120 3.4541 -0.5919 21 6 2.1867 4.6946 -1.3613 22 7 1.7172 2.3494 -0.8666 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.3740 1.4912 1.7723 29 1 4.7976 3.0480 2.4726 30 1 4.2689 4.8582 4.7000 31 1 5.1395 6.4017 4.5308 32 1 3.7022 6.0767 3.5329 33 1 9.2193 5.1967 5.3741 34 1 1.3176 5.2523 -1.0124 35 1 3.0842 5.2982 -1.2261 36 1 2.0650 4.4559 -2.4179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090126248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:58 Heat of formation + Delta-G solvation = 33.935312 kcal Electronic energy + Delta-G solvation = -18325.988872 eV Core-core repulsion = 15425.898587 eV Total energy + Delta-G solvation = -2900.090286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.40891 -38.88429 -35.30229 -34.62189 -32.65732 -31.74570 -30.98178 -29.37756 -26.85463 -25.26197 -23.44281 -23.38775 -21.37696 -19.90683 -19.25168 -17.73508 -16.50143 -16.20635 -15.70918 -15.48345 -14.66389 -14.24961 -14.10382 -13.91317 -13.65024 -13.22625 -12.99887 -12.88344 -12.41368 -12.25665 -12.12990 -11.88498 -11.52512 -11.36760 -11.30593 -10.86631 -10.47895 -10.24057 -9.80979 -9.42443 -9.29310 -8.98202 -8.80607 -8.77483 -8.25711 -6.24509 -4.27808 1.50691 2.54750 2.64360 3.20273 3.32684 3.35968 3.61784 3.79467 4.27814 4.50511 4.79148 5.07570 5.09909 5.13491 5.22421 5.26658 5.39301 5.48887 5.60135 5.72496 5.80357 5.85337 6.07629 6.15185 6.24431 6.29844 6.48229 6.59589 6.76992 6.86396 7.10265 7.16243 7.43166 8.01467 8.19791 8.42265 8.66251 8.77802 9.35114 10.87537 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.005160 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.692963 B = 5425.352097 C = 5939.525475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C 0.023 3.977 4 C -0.191 4.191 5 C -0.024 4.024 6 C 0.578 3.422 7 O -0.557 6.557 8 N -0.681 5.681 9 C 0.237 3.763 10 H 0.053 0.947 11 C -0.162 4.162 12 C -0.537 4.537 13 H 0.082 0.918 14 C 0.080 3.920 15 N -0.890 5.890 16 Si 0.885 3.115 17 H -0.276 1.276 18 H -0.293 1.293 19 H -0.262 1.262 20 N -0.261 5.261 21 C 0.087 3.913 22 N -0.284 5.284 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.161 0.839 29 H 0.399 0.601 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -5.633 -8.484 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.134 4.134 4 C -0.220 4.220 5 C -0.153 4.153 6 C 0.362 3.638 7 O -0.437 6.437 8 N -0.329 5.329 9 C 0.134 3.866 10 H 0.070 0.930 11 C -0.220 4.220 12 C -0.574 4.574 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.527 5.527 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.187 1.187 20 N -0.048 5.048 21 C -0.053 4.053 22 N -0.117 5.117 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.234 0.766 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.974 -4.408 -9.656 17.549 hybrid contribution 0.447 0.458 1.111 1.282 sum -13.527 -3.950 -8.545 16.481 Atomic orbital electron populations 1.21709 0.94829 1.01416 1.02378 1.19843 0.95956 0.88602 1.02965 1.21912 1.00432 0.96523 0.94543 1.22148 1.04005 0.92572 1.03240 1.21714 1.02528 0.96836 0.94173 1.16990 0.79913 0.86232 0.80672 1.90720 1.68181 1.20241 1.64568 1.45957 1.43512 1.12453 1.30932 1.19198 0.89634 0.87528 0.90235 0.92966 1.22469 0.99146 1.00325 1.00071 1.21001 1.05813 0.97679 1.32957 0.90025 1.24815 0.94525 0.98594 0.94484 1.69859 1.13143 1.36397 1.33302 0.86885 0.76853 0.85427 0.79384 1.20237 1.22072 1.18665 1.45495 1.30507 1.09409 1.19385 1.22325 1.05887 0.81526 0.95584 1.73013 1.20126 0.92798 1.25776 0.92462 0.92764 0.92278 0.90645 0.90020 0.82177 0.76611 0.92567 0.93202 0.94618 0.92202 0.90028 0.86842 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.87 37.16 0.37 -0.98 16 2 C -0.03 -0.35 6.51 -27.88 -0.18 -0.53 16 3 C 0.02 0.31 6.49 -82.47 -0.54 -0.23 16 4 C -0.19 -2.77 10.42 -38.99 -0.41 -3.17 16 5 C -0.02 -0.40 6.96 -82.06 -0.57 -0.97 16 6 C 0.58 11.21 7.75 -12.63 -0.10 11.11 16 7 O -0.56 -12.04 14.31 5.25 0.08 -11.97 16 8 N -0.68 -13.54 5.05 -56.09 -0.28 -13.82 16 9 C 0.24 5.55 2.19 -69.08 -0.15 5.40 16 10 H 0.05 1.34 6.57 -51.93 -0.34 1.00 16 11 C -0.16 -3.53 8.96 37.16 0.33 -3.20 16 12 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 13 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 14 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 15 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 16 Si 0.88 21.31 24.37 -169.99 -4.14 17.17 16 17 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 20 N -0.26 -4.07 3.75 -63.88 -0.24 -4.31 16 21 C 0.09 1.09 10.88 59.85 0.65 1.74 16 22 N -0.28 -4.30 11.87 33.63 0.40 -3.90 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.16 1.94 7.63 -52.48 -0.40 1.54 16 29 H 0.40 7.04 7.62 -40.82 -0.31 6.73 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.11 1.57 6.21 -51.93 -0.32 1.25 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -31.38 299.47 -4.86 -36.24 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.95 Total: 4.57 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.01 Total: -3.29 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.65 Total: -47.24 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.38 -4.86 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090126248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.176 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds