Wall clock time and date at job start Sun Mar 29 2020 23:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46764 * 2 1 4 4 C 1.39681 * 126.06370 * 125.28388 * 3 2 1 5 5 C 1.38410 * 105.35385 * 180.08690 * 4 3 2 6 6 C 1.47159 * 126.87952 * 179.91156 * 5 4 3 7 7 O 1.21631 * 119.99657 * 184.81778 * 6 5 4 8 8 N 1.34774 * 120.00663 * 4.82250 * 6 5 4 9 9 C 1.46500 * 120.00613 * 174.39477 * 8 6 5 10 10 H 1.08997 * 109.46703 * 34.99854 * 9 8 6 11 11 C 1.52993 * 109.47173 * 275.00004 * 9 8 6 12 12 C 1.50698 * 109.46975 * 154.99726 * 9 8 6 13 13 H 1.07996 * 120.00596 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99802 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00028 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00303 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46926 * 89.99737 * 16 14 12 18 18 H 1.48491 * 109.47332 * 210.00061 * 16 14 12 19 19 H 1.48500 * 109.46828 * 330.00384 * 16 14 12 20 20 N 1.36596 * 106.23401 * 359.65548 * 5 4 3 21 21 C 1.46497 * 125.19372 * 180.20354 * 20 5 4 22 22 N 1.28450 * 109.62042 * 0.22542 * 20 5 4 23 23 H 1.08998 * 109.47219 * 299.99877 * 1 2 3 24 24 H 1.08997 * 109.47120 * 59.99894 * 1 2 3 25 25 H 1.08996 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47279 * 239.99636 * 2 1 3 27 27 H 1.09006 * 109.46919 * 120.00115 * 2 1 3 28 28 H 1.07998 * 127.32323 * 359.96872 * 4 3 2 29 29 H 0.97001 * 119.99727 * 354.39619 * 8 6 5 30 30 H 1.08994 * 109.47134 * 179.97438 * 11 9 8 31 31 H 1.08999 * 109.47276 * 59.99568 * 11 9 8 32 32 H 1.09001 * 109.46978 * 300.00024 * 11 9 8 33 33 H 0.97000 * 120.00562 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47323 * 90.52879 * 21 20 5 35 35 H 1.09005 * 109.47444 * 210.53476 * 21 20 5 36 36 H 1.09007 * 109.46878 * 330.53393 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9212 1.9787 0.9217 5 6 3.0846 3.2942 0.5233 6 6 3.9262 4.3144 1.1687 7 8 3.9102 5.4610 0.7634 8 7 4.7146 3.9782 2.2088 9 6 5.6426 4.9617 2.7725 10 1 5.1941 5.9539 2.7239 11 6 6.9457 4.9513 1.9707 12 6 5.9338 4.6118 4.2090 13 1 5.4740 3.7435 4.6573 14 6 6.7874 5.4003 4.9512 15 7 7.3470 6.4580 4.4056 16 14 7.1490 4.9662 6.7318 17 1 8.3283 4.0657 6.7920 18 1 7.4343 6.2072 7.4957 19 1 5.9719 4.2805 7.3229 20 7 2.3127 3.4540 -0.5922 21 6 2.1830 4.6959 -1.3584 22 7 1.7174 2.3493 -0.8667 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.3816 1.4885 1.7668 29 1 4.6676 3.0850 2.5842 30 1 7.6359 5.6833 2.3898 31 1 6.7350 5.2043 0.9317 32 1 7.3942 3.9590 2.0193 33 1 7.9477 7.0125 4.9275 34 1 2.9384 4.7188 -2.1438 35 1 1.1907 4.7441 -1.8071 36 1 2.3233 5.5488 -0.6943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090126249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:01 Heat of formation + Delta-G solvation = 25.299360 kcal Electronic energy + Delta-G solvation = -18261.417696 eV Core-core repulsion = 15360.952927 eV Total energy + Delta-G solvation = -2900.464768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.33149 -38.67233 -35.11675 -34.53096 -32.65726 -31.63122 -30.71603 -28.63415 -26.78141 -25.31294 -23.37836 -23.24312 -21.28091 -19.80760 -19.11755 -17.64946 -16.21746 -16.10254 -15.63801 -15.14064 -14.54821 -14.15765 -14.06727 -13.86398 -13.58487 -13.20304 -12.78009 -12.50918 -12.30131 -12.03997 -11.80374 -11.48214 -11.28321 -11.15409 -10.99289 -10.81976 -10.43798 -10.36703 -10.27650 -9.33645 -9.10783 -8.89102 -8.71436 -8.60544 -8.01086 -6.16588 -4.25974 1.60567 2.63156 2.70366 3.22926 3.29954 3.32250 3.77317 3.95218 4.33684 4.56873 4.85634 5.13413 5.16150 5.24002 5.26589 5.33718 5.45737 5.54403 5.67785 5.77812 5.84647 5.90166 6.12259 6.18589 6.65535 6.75585 6.88626 6.93607 7.06455 7.32251 7.47334 7.63454 7.83686 8.07845 8.23529 8.53890 8.69710 8.95171 9.41250 10.89589 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.005060 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.598165 B = 5532.549387 C = 6240.249029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C 0.021 3.979 4 C -0.195 4.195 5 C -0.020 4.020 6 C 0.575 3.425 7 O -0.556 6.556 8 N -0.688 5.688 9 C 0.264 3.736 10 H 0.053 0.947 11 C -0.147 4.147 12 C -0.535 4.535 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.262 5.262 21 C 0.086 3.914 22 N -0.286 5.286 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.393 0.607 30 H 0.093 0.907 31 H 0.013 0.987 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 -9.669 -7.714 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.224 4.224 5 C -0.149 4.149 6 C 0.358 3.642 7 O -0.436 6.436 8 N -0.335 5.335 9 C 0.163 3.837 10 H 0.071 0.929 11 C -0.206 4.206 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 N -0.048 5.048 21 C -0.054 4.054 22 N -0.119 5.119 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.176 0.824 29 H 0.226 0.774 30 H 0.111 0.889 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.619 -8.308 -8.983 15.564 hybrid contribution 0.771 -0.691 1.773 2.054 sum -8.847 -8.999 -7.209 14.534 Atomic orbital electron populations 1.21706 0.94843 1.01358 1.02417 1.19828 0.95959 0.88670 1.02833 1.21896 1.00447 0.96534 0.94664 1.22117 1.04141 0.92724 1.03373 1.21850 1.02391 0.96858 0.93838 1.16992 0.79806 0.86117 0.81264 1.90716 1.67830 1.19905 1.65142 1.46320 1.38901 1.17384 1.30912 1.18857 0.84915 0.88349 0.91585 0.92917 1.22098 1.00751 1.01146 0.96606 1.21186 1.28464 1.12434 0.95216 0.91908 1.24880 0.95301 0.94657 0.98785 1.69894 1.30170 1.15302 1.36722 0.86418 0.78696 0.77928 0.83908 1.20489 1.21048 1.19790 1.45494 1.30552 1.09326 1.19461 1.22343 1.03539 0.82424 0.97140 1.73006 1.20355 0.92863 1.25690 0.92725 0.92276 0.92520 0.90744 0.90113 0.82350 0.77396 0.88885 0.96762 0.95230 0.92501 0.90110 0.89357 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.88 37.16 0.37 -1.02 16 2 C -0.03 -0.35 6.51 -27.88 -0.18 -0.53 16 3 C 0.02 0.30 6.49 -82.47 -0.54 -0.23 16 4 C -0.19 -2.94 10.43 -38.98 -0.41 -3.35 16 5 C -0.02 -0.36 6.96 -82.06 -0.57 -0.93 16 6 C 0.57 11.83 7.76 -12.64 -0.10 11.73 16 7 O -0.56 -12.85 14.29 5.25 0.08 -12.78 16 8 N -0.69 -14.41 5.06 -56.10 -0.28 -14.69 16 9 C 0.26 6.62 2.61 -69.09 -0.18 6.44 16 10 H 0.05 1.51 7.50 -51.93 -0.39 1.12 16 11 C -0.15 -3.60 9.26 37.15 0.34 -3.25 16 12 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 16 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 N -0.26 -4.27 3.75 -63.88 -0.24 -4.51 16 21 C 0.09 1.14 10.89 59.85 0.65 1.79 16 22 N -0.29 -4.49 11.87 33.64 0.40 -4.09 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.16 2.00 7.58 -52.49 -0.40 1.60 16 29 H 0.39 7.17 7.57 -40.82 -0.31 6.86 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.70 6.19 -51.93 -0.32 1.38 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -30.47 306.18 -5.91 -36.38 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.08 Total: 5.51 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.00 Total: -1.90 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.50 Total: -47.12 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.47 -5.91 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090126249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.678 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds