Wall clock time and date at job start Sun Mar 29 2020 23:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46764 * 2 1 4 4 C 1.39681 * 126.06370 * 125.28388 * 3 2 1 5 5 C 1.38410 * 105.35385 * 180.08690 * 4 3 2 6 6 C 1.47159 * 126.87952 * 179.91156 * 5 4 3 7 7 O 1.21631 * 119.99657 * 184.81778 * 6 5 4 8 8 N 1.34774 * 120.00663 * 4.82250 * 6 5 4 9 9 C 1.46500 * 120.00613 * 174.39477 * 8 6 5 10 10 H 1.08997 * 109.46703 * 34.99854 * 9 8 6 11 11 C 1.52993 * 109.47173 * 275.00004 * 9 8 6 12 12 C 1.50698 * 109.46975 * 154.99726 * 9 8 6 13 13 H 1.07996 * 120.00596 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99802 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00028 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00303 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46926 * 89.99737 * 16 14 12 18 18 H 1.48491 * 109.47332 * 210.00061 * 16 14 12 19 19 H 1.48500 * 109.46828 * 330.00384 * 16 14 12 20 20 N 1.36596 * 106.23401 * 359.65548 * 5 4 3 21 21 C 1.46497 * 125.19372 * 180.20354 * 20 5 4 22 22 N 1.28450 * 109.62042 * 0.22542 * 20 5 4 23 23 H 1.08998 * 109.47219 * 299.99877 * 1 2 3 24 24 H 1.08997 * 109.47120 * 59.99894 * 1 2 3 25 25 H 1.08996 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47279 * 239.99636 * 2 1 3 27 27 H 1.09006 * 109.46919 * 120.00115 * 2 1 3 28 28 H 1.07998 * 127.32323 * 359.96872 * 4 3 2 29 29 H 0.97001 * 119.99727 * 354.39619 * 8 6 5 30 30 H 1.08994 * 109.47134 * 179.97438 * 11 9 8 31 31 H 1.08999 * 109.47276 * 59.99568 * 11 9 8 32 32 H 1.09001 * 109.46978 * 300.00024 * 11 9 8 33 33 H 0.97000 * 120.00562 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47323 * 90.52879 * 21 20 5 35 35 H 1.09005 * 109.47444 * 210.53476 * 21 20 5 36 36 H 1.09007 * 109.46878 * 330.53393 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9212 1.9787 0.9217 5 6 3.0846 3.2942 0.5233 6 6 3.9262 4.3144 1.1687 7 8 3.9102 5.4610 0.7634 8 7 4.7146 3.9782 2.2088 9 6 5.6426 4.9617 2.7725 10 1 5.1941 5.9539 2.7239 11 6 6.9457 4.9513 1.9707 12 6 5.9338 4.6118 4.2090 13 1 5.4740 3.7435 4.6573 14 6 6.7874 5.4003 4.9512 15 7 7.3470 6.4580 4.4056 16 14 7.1490 4.9662 6.7318 17 1 8.3283 4.0657 6.7920 18 1 7.4343 6.2072 7.4957 19 1 5.9719 4.2805 7.3229 20 7 2.3127 3.4540 -0.5922 21 6 2.1830 4.6959 -1.3584 22 7 1.7174 2.3493 -0.8667 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.3816 1.4885 1.7668 29 1 4.6676 3.0850 2.5842 30 1 7.6359 5.6833 2.3898 31 1 6.7350 5.2043 0.9317 32 1 7.3942 3.9590 2.0193 33 1 7.9477 7.0125 4.9275 34 1 2.9384 4.7188 -2.1438 35 1 1.1907 4.7441 -1.8071 36 1 2.3233 5.5488 -0.6943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090126249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:01 Heat of formation + Delta-G solvation = 5.243560 kcal Electronic energy + Delta-G solvation = -18262.287380 eV Core-core repulsion = 15360.952927 eV Total energy + Delta-G solvation = -2901.334453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.54507 -40.36144 -36.86082 -35.66290 -34.47046 -32.79516 -32.08137 -30.38771 -27.84116 -27.34819 -24.80420 -24.26967 -22.78056 -21.45299 -20.59212 -19.04953 -17.92425 -17.34440 -17.27913 -16.86093 -15.99407 -15.72503 -15.14685 -15.00117 -14.79230 -14.71072 -14.37900 -13.83891 -13.71326 -13.41539 -13.03605 -12.96122 -12.89686 -12.72698 -12.31679 -12.29904 -12.14841 -12.13177 -11.48466 -11.11796 -11.01666 -10.60784 -10.23487 -9.85736 -9.76730 -8.17749 -6.34975 0.24886 1.42549 1.47478 1.48680 1.56648 1.58729 2.23110 2.33484 2.54127 3.13484 3.50218 3.64555 4.00866 4.26421 4.28261 4.34720 4.50648 4.57844 4.62245 4.72148 4.80586 4.88852 4.91176 5.05641 5.14570 5.27430 5.38724 5.41544 5.52509 5.56663 5.66009 5.79437 5.85847 6.06715 6.69889 6.77876 7.07456 7.24756 7.40899 8.88796 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.005060 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.598165 B = 5532.549387 C = 6240.249029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C 0.020 3.980 4 C -0.182 4.182 5 C -0.051 4.051 6 C 0.575 3.425 7 O -0.589 6.589 8 N -0.684 5.684 9 C 0.271 3.729 10 H 0.006 0.994 11 C -0.134 4.134 12 C -0.547 4.547 13 H 0.075 0.925 14 C 0.017 3.983 15 N -0.917 5.917 16 Si 0.973 3.027 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.264 1.264 20 N -0.269 5.269 21 C 0.082 3.918 22 N -0.291 5.291 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.184 0.816 29 H 0.408 0.592 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -12.290 -7.190 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.136 4.136 4 C -0.211 4.211 5 C -0.179 4.179 6 C 0.361 3.639 7 O -0.472 6.472 8 N -0.333 5.333 9 C 0.168 3.832 10 H 0.024 0.976 11 C -0.193 4.193 12 C -0.585 4.585 13 H 0.093 0.907 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.798 3.202 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.188 1.188 20 N -0.056 5.056 21 C -0.057 4.057 22 N -0.125 5.125 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.201 0.799 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.317 -10.963 -8.469 17.273 hybrid contribution 0.916 0.108 1.537 1.792 sum -9.401 -10.855 -6.932 15.946 Atomic orbital electron populations 1.21681 0.94270 1.02658 1.01397 1.20037 0.96377 0.86328 1.04556 1.22575 0.99601 0.97883 0.93582 1.22515 1.03340 0.91567 1.03687 1.21499 1.03901 0.97090 0.95434 1.17336 0.79532 0.86313 0.80702 1.90697 1.68860 1.21650 1.65962 1.46006 1.38636 1.17337 1.31274 1.18474 0.85360 0.87234 0.92110 0.97585 1.21919 1.00133 1.01106 0.96147 1.21506 1.28521 1.12844 0.95672 0.90695 1.25770 0.95070 0.94423 1.03080 1.70039 1.30747 1.16333 1.38372 0.85327 0.78858 0.77555 0.78503 1.19570 1.21313 1.18836 1.45753 1.30380 1.10111 1.19363 1.22450 1.05520 0.81037 0.96718 1.73033 1.20255 0.93000 1.26172 0.93534 0.93501 0.90096 0.89515 0.87872 0.79893 0.75659 0.91099 0.96886 0.93883 0.92479 0.89099 0.86669 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.88 71.98 0.71 -1.60 16 2 C -0.03 -0.59 6.51 29.85 0.19 -0.40 16 3 C 0.02 0.52 6.49 43.05 0.28 0.80 16 4 C -0.18 -5.10 10.43 22.66 0.24 -4.86 16 5 C -0.05 -1.75 6.96 40.79 0.28 -1.47 16 6 C 0.58 24.01 7.76 86.59 0.67 24.68 16 7 O -0.59 -28.33 14.29 -4.13 -0.06 -28.39 16 8 N -0.68 -28.69 5.06 -449.65 -2.27 -30.96 16 9 C 0.27 13.86 2.61 44.24 0.12 13.98 16 10 H 0.01 0.37 7.50 -2.39 -0.02 0.36 16 11 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 12 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 13 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 14 C 0.02 0.89 5.30 84.66 0.45 1.34 16 15 N -0.92 -51.60 11.32 21.45 0.24 -51.36 16 16 Si 0.97 41.18 29.54 68.60 2.03 43.20 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 N -0.27 -8.57 3.75 -356.02 -1.33 -9.90 16 21 C 0.08 2.18 10.89 127.77 1.39 3.57 16 22 N -0.29 -8.65 11.87 -47.49 -0.56 -9.21 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.35 8.12 -2.38 -0.02 1.33 16 28 H 0.18 4.03 7.58 -2.91 -0.02 4.00 16 29 H 0.41 14.40 7.57 -92.71 -0.70 13.70 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.10 2.93 6.19 -2.38 -0.01 2.91 16 Total: -1.00 -66.20 306.18 3.64 -62.56 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.22 Total: 1.84 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.93 Total: -101.44 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.39 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -66.20 3.64 -62.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090126249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.804 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds