Wall clock time and date at job start Sun Mar 29 2020 23:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47082 * 2 1 4 4 C 1.39675 * 126.06529 * 125.26283 * 3 2 1 5 5 C 1.38407 * 105.35855 * 180.11143 * 4 3 2 6 6 C 1.47167 * 126.88755 * 179.91831 * 5 4 3 7 7 O 1.21625 * 119.99720 * 182.64360 * 6 5 4 8 8 N 1.34777 * 119.99820 * 2.63875 * 6 5 4 9 9 C 1.46495 * 119.99806 * 174.89121 * 8 6 5 10 10 C 1.53005 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.46978 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99901 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99876 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99951 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47105 * 59.99893 * 15 13 11 17 17 H 1.48495 * 109.47079 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46913 * 300.00304 * 15 13 11 19 19 N 1.36603 * 106.22811 * 359.65398 * 5 4 3 20 20 C 1.46500 * 125.18752 * 180.20695 * 19 5 4 21 21 N 1.28436 * 109.62307 * 0.22533 * 19 5 4 22 22 H 1.09002 * 109.47382 * 60.00041 * 1 2 3 23 23 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47195 * 299.99730 * 1 2 3 25 25 H 1.09000 * 109.47195 * 240.00270 * 2 1 3 26 26 H 1.09002 * 109.47382 * 119.99959 * 2 1 3 27 27 H 1.07999 * 127.32574 * 0.02983 * 4 3 2 28 28 H 0.97005 * 119.99581 * 354.89795 * 8 6 5 29 29 H 1.08998 * 109.46987 * 60.00628 * 9 8 6 30 30 H 1.08997 * 109.47708 * 300.00464 * 9 8 6 31 31 H 1.08997 * 109.47128 * 300.00610 * 10 9 8 32 32 H 1.08998 * 109.46937 * 60.00389 * 10 9 8 33 33 H 0.97003 * 119.99951 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.47447 * 85.12965 * 20 19 5 35 35 H 1.08999 * 109.47150 * 205.12995 * 20 19 5 36 36 H 1.08998 * 109.47567 * 325.12777 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9209 1.9788 0.9219 5 6 3.0841 3.2943 0.5238 6 6 3.9254 4.3147 1.1693 7 8 3.9393 5.4523 0.7393 8 7 4.6805 3.9886 2.2371 9 6 5.6018 4.9725 2.8107 10 6 6.3324 4.3524 4.0035 11 6 7.2797 5.3648 4.5939 12 1 7.3529 6.3519 4.1620 13 6 8.0528 5.0308 5.6856 14 7 7.9631 3.8289 6.2119 15 14 9.2265 6.2860 6.4181 16 1 8.4604 7.4747 6.8712 17 1 9.9357 5.6841 7.5756 18 1 10.2160 6.6973 5.3900 19 7 2.3123 3.4541 -0.5919 20 6 2.1826 4.6961 -1.3580 21 7 1.7175 2.3494 -0.8667 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.3817 1.4885 1.7667 28 1 4.6139 3.1022 2.6256 29 1 5.0402 5.8459 3.1423 30 1 6.3286 5.2730 2.0561 31 1 5.6058 4.0516 4.7582 32 1 6.8940 3.4792 3.6715 33 1 8.5073 3.5938 6.9797 34 1 2.9962 4.7643 -2.0801 35 1 1.2282 4.7002 -1.8845 36 1 2.2267 5.5479 -0.6794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090126264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:27 Heat of formation + Delta-G solvation = 18.947854 kcal Electronic energy + Delta-G solvation = -17715.469241 eV Core-core repulsion = 14814.729051 eV Total energy + Delta-G solvation = -2900.740190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53220 -39.02644 -35.23618 -34.65438 -33.00314 -31.87895 -31.01856 -29.34025 -26.96618 -25.08533 -23.49783 -22.91902 -21.28579 -20.61031 -19.16237 -17.57958 -16.53496 -16.34013 -15.88204 -15.10034 -14.79381 -14.53235 -14.27965 -14.19902 -13.81581 -13.48096 -13.10814 -12.90743 -12.51962 -12.32482 -12.18276 -11.59619 -11.38531 -11.26494 -11.05752 -10.69911 -10.58371 -10.39316 -9.99674 -9.59405 -9.30820 -9.12908 -8.88584 -8.60855 -8.40748 -6.12115 -4.15449 1.34854 2.41638 2.53355 3.29426 3.33558 3.35856 3.40935 3.55784 4.38148 4.40504 4.66585 4.93500 5.02555 5.12831 5.20766 5.24965 5.28072 5.39011 5.49070 5.62405 5.71060 5.77894 5.99673 6.09354 6.23467 6.26433 6.48236 6.64433 6.74632 6.76023 7.46052 7.56425 7.80767 7.85892 8.07488 8.22314 8.43465 8.89948 9.49534 10.99378 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.003918 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.168196 B = 7144.342030 C = 7878.762789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 C 0.023 3.977 4 C -0.188 4.188 5 C -0.029 4.029 6 C 0.581 3.419 7 O -0.551 6.551 8 N -0.703 5.703 9 C 0.123 3.877 10 C 0.012 3.988 11 C -0.524 4.524 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.260 5.260 20 C 0.089 3.911 21 N -0.280 5.280 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.161 0.839 28 H 0.402 0.598 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -6.089 -11.971 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.217 4.217 5 C -0.157 4.157 6 C 0.365 3.635 7 O -0.431 6.431 8 N -0.352 5.352 9 C 0.001 3.999 10 C -0.025 4.025 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.047 5.047 20 C -0.051 4.051 21 N -0.114 5.114 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.179 0.821 28 H 0.236 0.764 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.061 -5.012 -13.163 19.208 hybrid contribution 1.181 0.114 1.340 1.790 sum -11.880 -4.897 -11.823 17.461 Atomic orbital electron populations 1.21710 0.94736 1.01515 1.02404 1.19858 0.96052 0.88483 1.03042 1.21946 1.00267 0.96643 0.94472 1.22172 1.03725 0.92555 1.03278 1.21604 1.03053 0.96736 0.94339 1.16970 0.79542 0.86091 0.80861 1.90749 1.66740 1.20545 1.65043 1.46075 1.41024 1.18212 1.29909 1.21833 0.90356 0.90789 0.96924 1.19335 0.95203 0.96905 0.91069 1.20988 1.22490 0.98942 1.13846 0.92257 1.24990 0.97091 0.95463 0.96659 1.69942 1.40508 1.19237 1.23484 0.86563 0.80942 0.81358 0.78621 1.20097 1.21213 1.20101 1.45513 1.30466 1.09430 1.19310 1.22296 1.03854 0.81991 0.97004 1.73044 1.20057 0.92765 1.25505 0.92270 0.92390 0.92704 0.90596 0.89941 0.82106 0.76392 0.92101 0.92233 0.95770 0.95773 0.92728 0.89876 0.89049 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.87 37.15 0.37 -0.89 16 2 C -0.04 -0.33 6.51 -27.88 -0.18 -0.51 16 3 C 0.02 0.30 6.49 -82.47 -0.54 -0.24 16 4 C -0.19 -2.50 10.43 -38.98 -0.41 -2.91 16 5 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 6 C 0.58 10.13 7.80 -12.64 -0.10 10.03 16 7 O -0.55 -10.83 14.79 5.26 0.08 -10.75 16 8 N -0.70 -12.23 5.54 -61.47 -0.34 -12.57 16 9 C 0.12 2.53 5.62 -4.04 -0.02 2.51 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 15 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 N -0.26 -3.74 3.75 -63.88 -0.24 -3.98 16 20 C 0.09 1.00 10.71 59.85 0.64 1.64 16 21 N -0.28 -3.95 11.87 33.64 0.40 -3.55 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.16 1.75 7.58 -52.49 -0.40 1.35 16 28 H 0.40 6.10 7.50 -40.82 -0.31 5.80 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.33 6.54 -51.93 -0.34 0.99 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -31.58 311.35 -6.29 -37.87 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.23 Total: 1.45 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.36 Total: -4.24 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.56 Total: -45.10 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.58 -6.29 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090126264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.821 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds