Wall clock time and date at job start Sun Mar 29 2020 23:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47061 * 2 1 4 4 N 1.30452 * 125.98545 * 270.31608 * 3 2 1 5 5 N 1.39930 * 108.91142 * 180.11882 * 4 3 2 6 6 C 1.46500 * 125.74826 * 179.87299 * 5 4 3 7 7 C 1.34283 * 108.49772 * 359.60690 * 5 4 3 8 8 C 1.38106 * 107.40400 * 0.22985 * 7 5 4 9 9 C 1.47357 * 126.41981 * 179.97438 * 8 7 5 10 10 O 1.21629 * 120.00219 * 219.15292 * 9 8 7 11 11 N 1.34780 * 120.00062 * 39.14862 * 9 8 7 12 12 C 1.36984 * 120.00013 * 4.66701 * 11 9 8 13 13 H 1.08000 * 119.99667 * 13.79244 * 12 11 9 14 14 C 1.38975 * 119.99700 * 193.79464 * 12 11 9 15 15 N 1.31408 * 120.00275 * 24.52470 * 14 12 11 16 16 Si 1.86802 * 119.99634 * 204.52541 * 14 12 11 17 17 H 1.48504 * 109.47249 * 94.98897 * 16 14 12 18 18 H 1.48499 * 109.47024 * 214.98949 * 16 14 12 19 19 H 1.48504 * 109.47295 * 334.98703 * 16 14 12 20 20 C 1.46496 * 120.00084 * 184.65988 * 11 9 8 21 21 C 1.53001 * 109.47021 * 83.91921 * 20 11 9 22 22 H 1.09008 * 109.47013 * 300.00079 * 1 2 3 23 23 H 1.08994 * 109.47508 * 59.99876 * 1 2 3 24 24 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47034 * 239.99994 * 2 1 3 26 26 H 1.08994 * 109.47508 * 120.00124 * 2 1 3 27 27 H 1.09005 * 109.47326 * 269.68970 * 6 5 4 28 28 H 1.09003 * 109.47496 * 29.68637 * 6 5 4 29 29 H 1.09000 * 109.47135 * 149.68904 * 6 5 4 30 30 H 1.08000 * 126.29584 * 180.19017 * 7 5 4 31 31 H 0.97004 * 119.99987 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47368 * 203.91566 * 20 11 9 33 33 H 1.08999 * 109.47262 * 323.91741 * 20 11 9 34 34 H 1.09000 * 109.47520 * 180.02562 * 21 20 11 35 35 H 1.09002 * 109.46760 * 300.00017 * 21 20 11 36 36 H 1.08999 * 109.47249 * 59.99812 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2823 2.1454 -1.0556 5 7 2.7329 3.4049 -0.6447 6 6 3.1207 4.5059 -1.5300 7 6 2.7444 3.4363 0.6977 8 6 2.3092 2.2037 1.1434 9 6 2.1617 1.7834 2.5481 10 8 2.4684 0.6544 2.8805 11 7 1.6871 2.6503 3.4646 12 6 1.2523 3.8894 3.0747 13 1 1.0782 4.0962 2.0291 14 6 1.0351 4.8802 4.0247 15 7 1.6666 4.8361 5.1762 16 14 -0.1544 6.2748 3.6645 17 1 -1.4901 5.9426 4.2220 18 1 0.3457 7.5257 4.2893 19 1 -0.2643 6.4648 2.1957 20 6 1.6362 2.2673 4.8776 21 6 2.9995 2.5209 5.5242 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.1861 4.4373 -1.7499 28 1 2.5533 4.4426 -2.4586 29 1 2.9112 5.4569 -1.0403 30 1 3.0402 4.2715 1.3152 31 1 1.5153 5.5279 5.8392 32 1 0.8765 2.8597 5.3876 33 1 1.3868 1.2093 4.9586 34 1 2.9619 2.2355 6.5755 35 1 3.7592 1.9284 5.0143 36 1 3.2489 3.5788 5.4432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092338287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:33 Heat of formation + Delta-G solvation = 47.169873 kcal Electronic energy + Delta-G solvation = -19210.323598 eV Core-core repulsion = 16310.807207 eV Total energy + Delta-G solvation = -2899.516392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69631 -38.07325 -35.02718 -34.04610 -31.56885 -31.33731 -30.41175 -28.73238 -26.38436 -24.83173 -23.36378 -22.20289 -20.97254 -19.24510 -18.79169 -17.37173 -15.92168 -15.47947 -14.98657 -14.40140 -14.33235 -14.09533 -13.73235 -13.26426 -12.95879 -12.75556 -12.42025 -12.32722 -12.22374 -11.80478 -11.51550 -11.21868 -11.10401 -10.95946 -10.77967 -10.59985 -10.46486 -10.28210 -10.07572 -9.61616 -8.94444 -8.70344 -8.39809 -7.76681 -7.70795 -6.37384 -3.86068 2.35932 2.92737 2.96329 3.13987 3.19371 3.20396 4.06128 4.30105 4.80438 4.94571 5.15863 5.30044 5.32442 5.45369 5.53119 5.66903 5.83436 5.97591 6.09078 6.31163 6.38814 6.51872 6.63307 6.67782 6.70697 6.80270 6.90429 7.06322 7.22589 7.34249 7.39916 7.51095 7.77474 7.88725 8.25499 8.49396 9.09519 9.61105 10.02496 10.59308 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.009410 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.841034 B = 2974.787003 C = 3734.448661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C 0.115 3.885 4 N -0.320 5.320 5 N -0.380 5.380 6 C 0.105 3.895 7 C 0.099 3.901 8 C -0.240 4.240 9 C 0.530 3.470 10 O -0.608 6.608 11 N -0.435 5.435 12 C -0.333 4.333 13 H 0.100 0.900 14 C 0.037 3.963 15 N -0.853 5.853 16 Si 0.909 3.091 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.141 3.859 21 C -0.150 4.150 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.187 0.813 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.025 0.975 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 1.000 -7.372 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.052 4.052 4 N -0.142 5.142 5 N -0.161 5.161 6 C -0.036 4.036 7 C -0.049 4.049 8 C -0.254 4.254 9 C 0.319 3.681 10 O -0.495 6.495 11 N -0.152 5.152 12 C -0.461 4.461 13 H 0.117 0.883 14 C -0.168 4.168 15 N -0.491 5.491 16 Si 0.736 3.264 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.018 3.982 21 C -0.208 4.208 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.204 0.796 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.310 0.768 -8.351 8.392 hybrid contribution -0.550 1.168 0.794 1.516 sum -0.240 1.936 -7.557 7.804 Atomic orbital electron populations 1.21648 0.94715 1.01339 1.02061 1.20005 0.95811 0.88987 1.03636 1.22291 0.96967 0.96461 0.89496 1.76912 1.23258 0.90958 1.23033 1.48122 1.51677 1.11309 1.04987 1.21768 1.00872 0.86543 0.94459 1.23301 0.98513 0.99350 0.83711 1.20286 1.15693 0.94269 0.95127 1.17065 0.81643 0.85488 0.83925 1.90575 1.56701 1.20952 1.81299 1.43649 1.52803 1.13035 1.05753 1.19760 1.43042 0.88102 0.95172 0.88270 1.25170 0.97370 0.98366 0.95855 1.70087 1.36802 1.34305 1.07932 0.86198 0.81211 0.80250 0.78707 1.20364 1.21063 1.19645 1.21006 0.98765 0.96809 0.81602 1.22160 0.96924 1.04722 0.96996 0.92225 0.93116 0.92428 0.91282 0.88315 0.91220 0.89733 0.89575 0.79621 0.92192 0.90021 0.94262 0.95044 0.95575 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.05 -0.81 6.32 -27.88 -0.18 -0.99 16 3 C 0.12 2.37 6.51 -82.01 -0.53 1.84 16 4 N -0.32 -6.26 12.50 33.90 0.42 -5.83 16 5 N -0.38 -6.69 3.98 -67.57 -0.27 -6.96 16 6 C 0.11 1.23 11.44 59.85 0.68 1.92 16 7 C 0.10 1.96 9.20 -16.53 -0.15 1.81 16 8 C -0.24 -5.39 5.30 -105.07 -0.56 -5.95 16 9 C 0.53 13.39 7.36 -12.55 -0.09 13.30 16 10 O -0.61 -16.49 15.35 5.25 0.08 -16.41 16 11 N -0.44 -11.01 2.64 -116.05 -0.31 -11.32 16 12 C -0.33 -8.18 8.09 -14.98 -0.12 -8.31 16 13 H 0.10 2.39 5.53 -52.49 -0.29 2.10 16 14 C 0.04 0.89 4.82 -17.46 -0.08 0.81 16 15 N -0.85 -20.88 8.54 55.50 0.47 -20.40 16 16 Si 0.91 18.81 29.62 -169.99 -5.03 13.78 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C 0.14 3.46 5.28 -4.04 -0.02 3.44 16 21 C -0.15 -3.49 9.69 37.16 0.36 -3.13 16 22 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.10 1.94 6.76 -51.93 -0.35 1.59 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.19 3.49 7.25 -52.49 -0.38 3.11 16 31 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 32 H 0.08 2.04 6.24 -51.93 -0.32 1.72 16 33 H 0.04 0.96 7.55 -51.93 -0.39 0.57 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 2.45 5.85 -51.93 -0.30 2.15 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -29.71 298.62 -5.44 -35.15 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.98 Total: 4.63 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.33 Total: 2.87 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.32 Total: -44.51 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.08 Total: -16.41 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.71 -5.44 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092338287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.315 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds