Wall clock time and date at job start Sun Mar 29 2020 23:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47061 * 2 1 4 4 N 1.30452 * 125.98545 * 270.31608 * 3 2 1 5 5 N 1.39930 * 108.91142 * 180.11882 * 4 3 2 6 6 C 1.46500 * 125.74826 * 179.87299 * 5 4 3 7 7 C 1.34283 * 108.49772 * 359.60690 * 5 4 3 8 8 C 1.38106 * 107.40400 * 0.22985 * 7 5 4 9 9 C 1.47357 * 126.41981 * 179.97438 * 8 7 5 10 10 O 1.21629 * 120.00219 * 219.15292 * 9 8 7 11 11 N 1.34780 * 120.00062 * 39.14862 * 9 8 7 12 12 C 1.36984 * 120.00013 * 4.66701 * 11 9 8 13 13 H 1.08000 * 119.99667 * 13.79244 * 12 11 9 14 14 C 1.38975 * 119.99700 * 193.79464 * 12 11 9 15 15 N 1.31408 * 120.00275 * 24.52470 * 14 12 11 16 16 Si 1.86802 * 119.99634 * 204.52541 * 14 12 11 17 17 H 1.48504 * 109.47249 * 94.98897 * 16 14 12 18 18 H 1.48499 * 109.47024 * 214.98949 * 16 14 12 19 19 H 1.48504 * 109.47295 * 334.98703 * 16 14 12 20 20 C 1.46496 * 120.00084 * 184.65988 * 11 9 8 21 21 C 1.53001 * 109.47021 * 83.91921 * 20 11 9 22 22 H 1.09008 * 109.47013 * 300.00079 * 1 2 3 23 23 H 1.08994 * 109.47508 * 59.99876 * 1 2 3 24 24 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47034 * 239.99994 * 2 1 3 26 26 H 1.08994 * 109.47508 * 120.00124 * 2 1 3 27 27 H 1.09005 * 109.47326 * 269.68970 * 6 5 4 28 28 H 1.09003 * 109.47496 * 29.68637 * 6 5 4 29 29 H 1.09000 * 109.47135 * 149.68904 * 6 5 4 30 30 H 1.08000 * 126.29584 * 180.19017 * 7 5 4 31 31 H 0.97004 * 119.99987 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47368 * 203.91566 * 20 11 9 33 33 H 1.08999 * 109.47262 * 323.91741 * 20 11 9 34 34 H 1.09000 * 109.47520 * 180.02562 * 21 20 11 35 35 H 1.09002 * 109.46760 * 300.00017 * 21 20 11 36 36 H 1.08999 * 109.47249 * 59.99812 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2823 2.1454 -1.0556 5 7 2.7329 3.4049 -0.6447 6 6 3.1207 4.5059 -1.5300 7 6 2.7444 3.4363 0.6977 8 6 2.3092 2.2037 1.1434 9 6 2.1617 1.7834 2.5481 10 8 2.4684 0.6544 2.8805 11 7 1.6871 2.6503 3.4646 12 6 1.2523 3.8894 3.0747 13 1 1.0782 4.0962 2.0291 14 6 1.0351 4.8802 4.0247 15 7 1.6666 4.8361 5.1762 16 14 -0.1544 6.2748 3.6645 17 1 -1.4901 5.9426 4.2220 18 1 0.3457 7.5257 4.2893 19 1 -0.2643 6.4648 2.1957 20 6 1.6362 2.2673 4.8776 21 6 2.9995 2.5209 5.5242 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.1861 4.4373 -1.7499 28 1 2.5533 4.4426 -2.4586 29 1 2.9112 5.4569 -1.0403 30 1 3.0402 4.2715 1.3152 31 1 1.5153 5.5279 5.8392 32 1 0.8765 2.8597 5.3876 33 1 1.3868 1.2093 4.9586 34 1 2.9619 2.2355 6.5755 35 1 3.7592 1.9284 5.0143 36 1 3.2489 3.5788 5.4432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092338287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:33 Heat of formation + Delta-G solvation = 29.542340 kcal Electronic energy + Delta-G solvation = -19211.087986 eV Core-core repulsion = 16310.807207 eV Total energy + Delta-G solvation = -2900.280779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22275 -39.95404 -36.90275 -35.48479 -33.42722 -32.76816 -32.09160 -30.42557 -27.67823 -26.69141 -24.93957 -23.82910 -22.60132 -20.98717 -20.43286 -19.04827 -17.75758 -17.01272 -16.37857 -16.21217 -16.03460 -15.63571 -15.15612 -14.98644 -14.60154 -14.30378 -13.97718 -13.87779 -13.51691 -13.44968 -13.01003 -12.85167 -12.79306 -12.61009 -12.37226 -12.17893 -12.06839 -12.03083 -11.60351 -11.54629 -10.84763 -10.33667 -10.13365 -9.66370 -9.32727 -8.21780 -5.77073 0.82733 1.30412 1.49463 1.53229 1.59553 1.64698 2.32384 2.48117 3.09410 3.23099 3.60688 3.94717 4.17902 4.28356 4.44768 4.46201 4.48553 4.66490 4.69720 4.71051 4.83199 4.87700 4.93469 4.98771 5.05608 5.16591 5.25928 5.32066 5.42776 5.45664 5.69456 5.88479 5.94006 6.11126 6.58891 6.74126 7.20656 7.70324 8.11973 8.75562 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.009410 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.841034 B = 2974.787003 C = 3734.448661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.045 4.045 3 C 0.104 3.896 4 N -0.323 5.323 5 N -0.369 5.369 6 C 0.091 3.909 7 C 0.110 3.890 8 C -0.281 4.281 9 C 0.520 3.480 10 O -0.640 6.640 11 N -0.443 5.443 12 C -0.351 4.351 13 H 0.103 0.897 14 C 0.006 3.994 15 N -0.872 5.872 16 Si 0.975 3.025 17 H -0.283 1.283 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.142 3.858 21 C -0.135 4.135 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.194 0.806 31 H 0.271 0.729 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 2.518 -8.837 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.063 4.063 4 N -0.146 5.146 5 N -0.149 5.149 6 C -0.048 4.048 7 C -0.041 4.041 8 C -0.295 4.295 9 C 0.310 3.690 10 O -0.530 6.530 11 N -0.160 5.160 12 C -0.478 4.478 13 H 0.120 0.880 14 C -0.197 4.197 15 N -0.509 5.509 16 Si 0.800 3.200 17 H -0.209 1.209 18 H -0.206 1.206 19 H -0.188 1.188 20 C 0.019 3.981 21 C -0.193 4.193 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.211 0.789 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.037 2.308 -9.847 10.114 hybrid contribution -0.391 0.752 1.238 1.500 sum -0.428 3.060 -8.610 9.147 Atomic orbital electron populations 1.21584 0.93363 1.02865 1.01050 1.20044 0.96946 0.87912 1.03544 1.22592 0.97160 0.97465 0.89061 1.76862 1.23367 0.91765 1.22593 1.48576 1.49712 1.11685 1.04898 1.22291 1.02535 0.85552 0.94388 1.23297 0.97444 0.98500 0.84824 1.20250 1.18807 0.96273 0.94168 1.17516 0.81194 0.85106 0.85192 1.90525 1.58104 1.22201 1.82159 1.43838 1.52726 1.13515 1.05903 1.19942 1.44098 0.88114 0.95668 0.87988 1.25871 0.97949 1.00279 0.95607 1.70156 1.37095 1.35128 1.08537 0.85191 0.78496 0.77460 0.78853 1.20950 1.20590 1.18774 1.20977 0.99174 0.96091 0.81905 1.21994 0.95701 1.03524 0.98060 0.94947 0.92203 0.89688 0.88938 0.90667 0.88991 0.88119 0.87205 0.78879 0.91844 0.90656 0.95071 0.92830 0.96980 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.89 71.98 0.71 -3.41 16 2 C -0.05 -1.62 6.32 29.85 0.19 -1.43 16 3 C 0.10 4.26 6.51 43.52 0.28 4.54 16 4 N -0.32 -12.15 12.50 -46.66 -0.58 -12.74 16 5 N -0.37 -12.20 3.98 -367.70 -1.46 -13.66 16 6 C 0.09 1.82 11.44 127.77 1.46 3.29 16 7 C 0.11 4.24 9.20 84.29 0.78 5.02 16 8 C -0.28 -12.73 5.30 -20.15 -0.11 -12.84 16 9 C 0.52 27.01 7.36 86.64 0.64 27.65 16 10 O -0.64 -36.08 15.35 -4.12 -0.06 -36.15 16 11 N -0.44 -22.86 2.64 -639.31 -1.68 -24.54 16 12 C -0.35 -17.22 8.09 84.07 0.68 -16.54 16 13 H 0.10 4.86 5.53 -2.91 -0.02 4.85 16 14 C 0.01 0.30 4.82 84.93 0.41 0.71 16 15 N -0.87 -42.19 8.54 21.67 0.18 -42.00 16 16 Si 0.98 37.59 29.62 68.60 2.03 39.62 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 20 C 0.14 7.09 5.28 86.38 0.46 7.55 16 21 C -0.13 -6.34 9.69 71.98 0.70 -5.64 16 22 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.07 3.04 6.76 -2.39 -0.02 3.03 16 27 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.19 7.06 7.25 -2.91 -0.02 7.04 16 31 H 0.27 12.40 8.31 -92.70 -0.77 11.63 16 32 H 0.08 3.82 6.24 -2.39 -0.01 3.81 16 33 H 0.03 1.57 7.55 -2.39 -0.02 1.55 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 4.34 5.85 -2.39 -0.01 4.33 16 Total: -1.00 -63.96 298.62 5.69 -58.26 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.08 Total: 22.31 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.20 Total: 8.89 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.55 Total: -92.94 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.06 Total: -36.15 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -63.96 5.69 -58.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092338287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.807 kcal (2) G-P(sol) polarization free energy of solvation -63.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds