Wall clock time and date at job start Sun Mar 29 2020 23:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46981 * 2 1 4 4 N 1.30453 * 125.98961 * 269.95624 * 3 2 1 5 5 N 1.39928 * 108.89701 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.75229 * 179.97438 * 5 4 3 7 7 C 1.34267 * 108.49508 * 359.75483 * 5 4 3 8 8 C 1.38049 * 107.41347 * 0.39219 * 7 5 4 9 9 C 1.47425 * 126.41176 * 179.87675 * 8 7 5 10 10 O 1.21604 * 119.99770 * 179.69133 * 9 8 7 11 11 N 1.34770 * 120.00199 * 359.68295 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.50698 * 109.47583 * 205.00282 * 12 11 9 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47245 * 89.99579 * 19 17 15 21 21 H 1.48501 * 109.47356 * 209.99508 * 19 17 15 22 22 H 1.48499 * 109.47321 * 329.99647 * 19 17 15 23 23 H 1.09004 * 109.47126 * 299.99999 * 1 2 3 24 24 H 1.09001 * 109.46942 * 60.00147 * 1 2 3 25 25 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47126 * 240.00001 * 2 1 3 27 27 H 1.09001 * 109.46942 * 119.99853 * 2 1 3 28 28 H 1.09009 * 109.46670 * 89.98131 * 6 5 4 29 29 H 1.08999 * 109.47631 * 209.97509 * 6 5 4 30 30 H 1.08997 * 109.47656 * 329.97886 * 6 5 4 31 31 H 1.07993 * 126.29217 * 180.23940 * 7 5 4 32 32 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 34 34 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 35 35 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 36 36 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1433 -1.0555 5 7 2.7347 3.4042 -0.6443 6 6 3.1251 4.5045 -1.5291 7 6 2.7398 3.4372 0.6980 8 6 2.3089 2.2036 1.1433 9 6 2.1591 1.7839 2.5486 10 8 1.7624 0.6644 2.8097 11 7 2.4620 2.6407 3.5437 12 6 2.3137 2.2235 4.9402 13 1 1.4535 1.5602 5.0317 14 6 3.5767 1.4857 5.3890 15 6 2.1061 3.4378 5.8081 16 1 2.0871 4.4221 5.3639 17 6 1.9417 3.2925 7.1693 18 7 1.9654 2.0939 7.7101 19 14 1.6852 4.7978 8.2450 20 1 0.2328 5.0887 8.3512 21 1 2.2384 4.5390 9.5987 22 1 2.3803 5.9625 7.6406 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2531 5.1203 -1.7497 29 1 3.8848 5.1132 -1.0386 30 1 3.5279 4.0991 -2.4572 31 1 3.0303 4.2740 1.3157 32 1 2.7782 3.5338 3.3354 33 1 4.4368 2.1489 5.2973 34 1 3.4661 1.1748 6.4278 35 1 3.7268 0.6073 4.7612 36 1 1.8493 1.9917 8.6678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092364876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:04 Heat of formation + Delta-G solvation = 2.626957 kcal Electronic energy + Delta-G solvation = -18380.143234 eV Core-core repulsion = 15478.695316 eV Total energy + Delta-G solvation = -2901.447918 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.38279 -39.98279 -36.69142 -35.54982 -34.29488 -32.72944 -31.80236 -30.14309 -27.70911 -27.29104 -24.93520 -23.62750 -22.52364 -20.94964 -20.58865 -19.13839 -17.81572 -17.05949 -16.79199 -16.62552 -15.91770 -15.60626 -15.33339 -15.09807 -14.75383 -14.41393 -13.96834 -13.74870 -13.66018 -13.43159 -12.96018 -12.87839 -12.82014 -12.71568 -12.42349 -12.22074 -12.12833 -12.03395 -11.71968 -11.06153 -10.66380 -10.51006 -10.33625 -9.83248 -9.45080 -8.13366 -6.30660 0.58949 1.15180 1.47565 1.48339 1.50744 1.58919 2.39799 2.63330 2.76681 3.17382 3.40600 3.74629 4.04178 4.25869 4.36645 4.44466 4.47693 4.51866 4.67443 4.72441 4.73404 4.83435 4.98615 5.03099 5.15414 5.18929 5.31818 5.47634 5.54450 5.67818 5.75253 5.92941 5.99976 6.15074 6.57459 6.77378 7.09763 7.37148 7.66889 8.93155 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.005471 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.511232 B = 5116.621380 C = 5770.362631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C 0.119 3.881 4 N -0.323 5.323 5 N -0.358 5.358 6 C 0.087 3.913 7 C 0.119 3.881 8 C -0.315 4.315 9 C 0.577 3.423 10 O -0.596 6.596 11 N -0.702 5.702 12 C 0.273 3.727 13 H -0.002 1.002 14 C -0.133 4.133 15 C -0.544 4.544 16 H 0.075 0.925 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.973 3.027 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.257 1.257 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.222 0.778 32 H 0.402 0.598 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.010 0.990 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 7.113 -16.848 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 C -0.048 4.048 4 N -0.145 5.145 5 N -0.136 5.136 6 C -0.052 4.052 7 C -0.034 4.034 8 C -0.330 4.330 9 C 0.365 3.635 10 O -0.478 6.478 11 N -0.351 5.351 12 C 0.170 3.830 13 H 0.015 0.985 14 C -0.192 4.192 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.181 1.181 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.116 0.884 31 H 0.238 0.762 32 H 0.237 0.763 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.813 6.434 -17.882 19.211 hybrid contribution -0.083 0.680 1.732 1.862 sum 2.731 7.114 -16.150 17.857 Atomic orbital electron populations 1.21536 0.93556 1.02722 1.00912 1.20069 0.96969 0.88131 1.03477 1.22581 0.95719 0.97405 0.89089 1.77042 1.23084 0.91872 1.22488 1.48688 1.48184 1.11478 1.05218 1.22430 1.03038 0.85160 0.94548 1.23556 0.95858 0.98423 0.85602 1.20372 1.21746 0.97390 0.93456 1.17756 0.76649 0.84467 0.84634 1.90656 1.49839 1.22211 1.85126 1.46047 1.66220 1.16327 1.06499 1.18317 0.93245 0.94526 0.76961 0.98457 1.21893 0.98235 0.97395 1.01628 1.21547 1.50907 0.93185 0.92586 0.90653 1.25813 0.94403 0.99112 0.99349 1.70071 1.49689 1.23692 1.12239 0.85332 0.78188 0.79168 0.77548 1.20534 1.21121 1.18121 0.94821 0.92160 0.90346 0.89114 0.90477 0.88793 0.85883 0.88390 0.76180 0.76344 0.94066 0.91554 0.97092 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.89 71.98 0.71 -3.02 16 2 C -0.05 -1.48 5.97 29.85 0.18 -1.30 16 3 C 0.12 3.95 6.52 43.51 0.28 4.23 16 4 N -0.32 -9.52 12.50 -46.68 -0.58 -10.10 16 5 N -0.36 -7.97 3.98 -367.77 -1.46 -9.43 16 6 C 0.09 0.88 11.44 127.77 1.46 2.35 16 7 C 0.12 2.86 10.99 84.28 0.93 3.79 16 8 C -0.31 -10.80 6.13 -20.15 -0.12 -10.92 16 9 C 0.58 24.90 7.78 86.66 0.67 25.58 16 10 O -0.60 -30.50 14.58 -4.04 -0.06 -30.56 16 11 N -0.70 -29.87 5.06 -449.38 -2.27 -32.14 16 12 C 0.27 14.36 2.56 44.25 0.11 14.47 16 13 H 0.00 -0.16 7.58 -2.39 -0.02 -0.17 16 14 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 15 C -0.54 -28.64 8.73 25.60 0.22 -28.41 16 16 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 19 Si 0.97 41.61 29.54 68.60 2.03 43.63 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.08 2.81 6.56 -2.39 -0.02 2.79 16 28 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.22 3.36 7.46 -2.91 -0.02 3.34 16 32 H 0.40 13.82 7.46 -92.70 -0.69 13.13 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -74.03 307.31 3.85 -70.18 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.39 Total: 19.37 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.57 Total: 1.73 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.08 Total: -104.35 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.06 Total: -30.56 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -74.03 3.85 -70.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092364876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.810 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds