Wall clock time and date at job start Sun Mar 29 2020 22:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35314 * 126.12723 * 2 1 4 4 C 1.50703 * 126.04186 * 0.02780 * 3 2 1 5 5 C 1.52999 * 109.46873 * 84.99713 * 4 3 2 6 6 C 1.50703 * 109.47236 * 180.02562 * 5 4 3 7 7 O 1.21294 * 119.99551 * 359.71999 * 6 5 4 8 8 N 1.34767 * 120.00231 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00080 * 359.97438 * 8 6 5 10 10 C 1.37102 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.08002 * 119.99775 * 322.81246 * 10 8 6 12 12 C 1.38946 * 120.00138 * 142.82293 * 10 8 6 13 13 N 1.31413 * 120.00224 * 158.40530 * 12 10 8 14 14 Si 1.86800 * 120.00157 * 338.40619 * 12 10 8 15 15 H 1.48495 * 109.47384 * 95.72053 * 14 12 10 16 16 H 1.48507 * 109.47027 * 215.72397 * 14 12 10 17 17 H 1.48504 * 109.46683 * 335.71968 * 14 12 10 18 18 C 1.39866 * 107.91967 * 180.28940 * 3 2 1 19 19 N 1.30842 * 108.20467 * 359.55885 * 18 3 2 20 20 N 1.34946 * 126.12673 * 180.02562 * 2 1 3 21 21 C 1.46500 * 126.03574 * 359.95350 * 20 2 1 22 22 H 1.08995 * 109.47613 * 89.99131 * 1 2 3 23 23 H 1.08998 * 109.47369 * 209.99930 * 1 2 3 24 24 H 1.09001 * 109.47266 * 329.99270 * 1 2 3 25 25 H 1.08999 * 109.47065 * 324.99833 * 4 3 2 26 26 H 1.08997 * 109.47279 * 204.99364 * 4 3 2 27 27 H 1.08999 * 109.47177 * 60.00188 * 5 4 3 28 28 H 1.09003 * 109.47251 * 300.00125 * 5 4 3 29 29 H 1.08998 * 109.46946 * 85.14086 * 9 8 6 30 30 H 1.08998 * 109.47116 * 205.13923 * 9 8 6 31 31 H 1.09001 * 109.47159 * 325.13651 * 9 8 6 32 32 H 0.97003 * 120.00168 * 179.97438 * 13 12 10 33 33 H 1.07999 * 125.90295 * 179.74309 * 18 3 2 34 34 H 1.08998 * 109.47401 * 90.00212 * 21 20 2 35 35 H 1.09007 * 109.47170 * 210.00138 * 21 20 2 36 36 H 1.09003 * 109.47291 * 329.99963 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 0.0006 5 6 1.5680 2.9741 1.4378 6 6 1.1059 4.4085 1.4385 7 8 1.0115 5.0156 0.3927 8 7 0.8035 5.0186 2.6015 9 6 0.9235 4.2872 3.8652 10 6 0.3827 6.3234 2.6020 11 1 0.8139 7.0302 1.9084 12 6 -0.5985 6.7366 3.4948 13 7 -0.7105 8.0085 3.8057 14 14 -1.7586 5.4842 4.2531 15 1 -1.2426 5.0735 5.5836 16 1 -3.1060 6.0887 4.4098 17 1 -1.8495 4.2947 3.3687 18 6 3.6334 0.6559 -0.0067 19 7 3.6334 -0.6525 -0.0010 20 7 2.3026 -1.0900 -0.0005 21 6 1.8538 -2.4846 -0.0001 22 1 -0.3634 0.0002 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 0.9305 2.6159 -0.5885 26 1 2.6185 3.1588 -0.4337 27 1 2.4808 2.8858 2.0269 28 1 0.7928 2.3428 1.8722 29 1 1.9510 4.3476 4.2238 30 1 0.2542 4.7270 4.6045 31 1 0.6544 3.2427 3.7075 32 1 -1.3957 8.2970 4.4288 33 1 4.5083 1.2890 -0.0123 34 1 1.7419 -2.8305 -1.0277 35 1 2.5901 -3.1031 0.5133 36 1 0.8957 -2.5578 0.5143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122583898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:53 Heat of formation + Delta-G solvation = 47.274067 kcal Electronic energy + Delta-G solvation = -18317.659457 eV Core-core repulsion = 15418.147583 eV Total energy + Delta-G solvation = -2899.511874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28798 -38.63571 -34.92539 -34.03064 -33.20288 -32.00121 -30.67274 -27.36109 -26.74536 -26.32324 -24.94388 -22.79513 -20.77513 -19.25248 -18.55778 -17.00835 -16.57159 -15.89228 -15.73829 -15.37715 -14.89864 -14.29725 -13.79148 -13.71632 -13.28184 -13.14392 -12.72147 -12.65362 -12.59366 -12.41768 -12.24356 -11.94850 -11.74997 -11.69633 -11.26198 -10.80538 -10.69379 -10.32570 -10.27198 -9.89261 -9.24673 -9.03088 -8.50732 -8.11092 -7.68130 -6.35468 -3.91689 1.85484 2.48451 2.84545 3.04882 3.23163 3.27314 3.82483 4.17801 4.42598 4.57520 4.64330 4.90260 4.99158 5.02673 5.11472 5.20326 5.40456 5.41663 5.52894 5.70154 5.73159 5.79235 5.89327 5.95699 6.10423 6.12085 6.26105 6.33926 6.56289 6.61378 6.76491 7.04102 7.59744 7.73084 8.34484 8.57265 9.02846 9.37769 9.85126 10.77068 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.005050 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.598780 B = 5543.222403 C = 5878.724023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.081 3.919 3 C -0.226 4.226 4 C -0.022 4.022 5 C -0.128 4.128 6 C 0.463 3.537 7 O -0.567 6.567 8 N -0.475 5.475 9 C 0.066 3.934 10 C -0.315 4.315 11 H 0.105 0.895 12 C 0.057 3.943 13 N -0.867 5.867 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C 0.055 3.945 19 N -0.305 5.305 20 N -0.380 5.380 21 C 0.103 3.897 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.273 0.727 33 H 0.182 0.818 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -19.741 -3.144 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C -0.238 4.238 4 C -0.061 4.061 5 C -0.169 4.169 6 C 0.252 3.748 7 O -0.449 6.449 8 N -0.197 5.197 9 C -0.078 4.078 10 C -0.443 4.443 11 H 0.122 0.878 12 C -0.148 4.148 13 N -0.504 5.504 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.131 4.131 19 N -0.126 5.126 20 N -0.163 5.163 21 C -0.039 4.039 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.199 0.801 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.950 -20.483 -3.552 20.997 hybrid contribution -1.141 0.059 0.736 1.359 sum 1.809 -20.424 -2.816 20.696 Atomic orbital electron populations 1.20484 0.87434 1.03893 1.03377 1.20870 0.94470 0.87042 1.02199 1.20031 0.92244 0.95936 1.15549 1.19585 1.01983 0.88776 0.95732 1.21619 1.01797 0.95142 0.98351 1.20379 0.82515 0.87902 0.84044 1.90547 1.56536 1.66820 1.30993 1.43720 1.60341 1.12144 1.03504 1.21969 1.01337 0.95807 0.88708 1.19077 1.20186 0.83289 1.21708 0.87764 1.25368 0.96857 0.95901 0.96667 1.69764 1.32911 1.15322 1.32379 0.86918 0.80917 0.82374 0.78965 1.20399 1.21561 1.18960 1.23802 0.97917 0.91854 0.99478 1.77312 0.96539 1.13132 1.25628 1.48339 1.04018 1.05732 1.58231 1.21765 1.00856 0.78207 1.03030 0.90190 0.91431 0.89188 0.90938 0.90533 0.90324 0.90679 0.93101 0.91813 0.92801 0.91692 0.80060 0.91064 0.89534 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.80 36.01 0.35 -0.55 16 2 C 0.08 1.02 6.93 -82.27 -0.57 0.45 16 3 C -0.23 -3.19 5.35 -105.05 -0.56 -3.75 16 4 C -0.02 -0.34 4.54 -27.88 -0.13 -0.47 16 5 C -0.13 -2.19 4.30 -27.88 -0.12 -2.31 16 6 C 0.46 10.73 7.63 -10.99 -0.08 10.65 16 7 O -0.57 -15.26 15.84 5.55 0.09 -15.17 16 8 N -0.47 -11.65 2.59 -122.19 -0.32 -11.97 16 9 C 0.07 1.30 8.78 59.85 0.53 1.83 16 10 C -0.32 -9.09 9.38 -14.93 -0.14 -9.23 16 11 H 0.10 3.38 7.90 -52.49 -0.41 2.96 16 12 C 0.06 1.60 5.29 -17.47 -0.09 1.51 16 13 N -0.87 -25.40 13.96 55.50 0.77 -24.62 16 14 Si 0.88 20.66 24.96 -169.99 -4.24 16.42 16 15 H -0.28 -6.04 6.69 56.52 0.38 -5.66 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.06 0.75 11.96 -17.36 -0.21 0.55 16 19 N -0.31 -4.36 12.58 30.62 0.39 -3.98 16 20 N -0.38 -4.66 4.01 -63.88 -0.26 -4.91 16 21 C 0.10 0.78 11.27 59.85 0.67 1.45 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.50 7.08 -51.93 -0.37 0.13 16 24 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 25 H 0.07 1.19 7.97 -51.93 -0.41 0.77 16 26 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 28 H 0.07 1.17 7.04 -51.93 -0.37 0.80 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.34 3.42 -51.93 -0.18 1.17 16 31 H 0.05 0.89 6.64 -51.93 -0.34 0.55 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.08 0.45 7.05 -51.93 -0.37 0.09 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -34.76 299.83 -4.35 -39.12 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.95 Total: 0.48 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.35 Total: 0.11 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.59 Total: -45.47 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.24 Total: 16.42 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.76 -4.35 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122583898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.391 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds