Wall clock time and date at job start Mon Mar 30 2020 00:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28443 * 125.19525 * 2 1 4 4 C 1.30875 * 110.95189 * 180.26596 * 3 2 1 5 5 C 1.50694 * 126.06340 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47157 * 255.02692 * 5 4 3 7 7 C 1.53007 * 109.46725 * 15.02710 * 5 4 3 8 8 C 1.53002 * 109.47316 * 135.02432 * 5 4 3 9 9 C 1.39645 * 107.87905 * 0.02562 * 4 3 2 10 10 C 1.36646 * 125.19349 * 180.30935 * 2 1 3 11 11 C 1.47024 * 126.89763 * 359.71236 * 10 2 1 12 12 O 1.21677 * 119.99600 * 5.01719 * 11 10 2 13 13 N 1.34770 * 120.00122 * 185.01960 * 11 10 2 14 14 C 1.36846 * 119.99990 * 185.12098 * 13 11 10 15 15 H 1.07993 * 119.99897 * 0.02562 * 14 13 11 16 16 C 1.39054 * 119.99971 * 179.97438 * 14 13 11 17 17 N 1.31367 * 119.99725 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46863 * 90.00218 * 18 16 14 20 20 H 1.48497 * 109.47371 * 210.00254 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00562 * 18 16 14 22 22 H 1.09008 * 109.47317 * 264.19392 * 1 2 3 23 23 H 1.08998 * 109.47250 * 24.19135 * 1 2 3 24 24 H 1.09003 * 109.47685 * 144.19350 * 1 2 3 25 25 H 1.08996 * 109.46924 * 59.99871 * 6 5 4 26 26 H 1.09006 * 109.46565 * 179.97438 * 6 5 4 27 27 H 1.08990 * 109.46957 * 299.99489 * 6 5 4 28 28 H 1.08998 * 109.47013 * 60.00071 * 7 5 4 29 29 H 1.09005 * 109.46811 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.47045 * 299.99776 * 7 5 4 31 31 H 1.08990 * 109.47311 * 60.00196 * 8 5 4 32 32 H 1.09006 * 109.46807 * 180.02562 * 8 5 4 33 33 H 1.09001 * 109.46963 * 300.00169 * 8 5 4 34 34 H 1.08004 * 127.32759 * 180.02562 * 9 4 3 35 35 H 0.96998 * 120.00120 * 5.12742 * 13 11 10 36 36 H 0.96999 * 119.99128 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0057 5 6 4.6333 1.6901 -0.0080 6 6 5.2583 1.7322 -1.4039 7 6 4.1373 3.0870 0.3711 8 6 5.6815 1.2284 1.0064 9 6 3.5623 -0.6660 -0.0103 10 6 2.2525 -1.1167 -0.0060 11 6 1.8004 -2.5157 -0.0077 12 8 0.6141 -2.7715 -0.0956 13 7 2.6999 -3.5147 0.0882 14 6 2.2910 -4.8162 -0.0185 15 1 1.2475 -5.0428 -0.1800 16 6 3.2192 -5.8469 0.0799 17 7 4.4885 -5.5712 0.2759 18 14 2.6610 -7.6235 -0.0665 19 1 2.7160 -8.0439 -1.4898 20 1 3.5553 -8.4916 0.7409 21 1 1.2679 -7.7475 0.4328 22 1 -0.3634 -0.1040 1.0225 23 1 -0.3633 0.9374 -0.4211 24 1 -0.3634 -0.8334 -0.6012 25 1 4.5116 2.0611 -2.1266 26 1 6.0968 2.4287 -1.4056 27 1 5.6117 0.7371 -1.6739 28 1 3.6920 3.0570 1.3655 29 1 4.9760 3.7833 0.3689 30 1 3.3906 3.4160 -0.3517 31 1 6.0348 0.2333 0.7364 32 1 6.5200 1.9249 1.0050 33 1 5.2362 1.1984 2.0008 34 1 4.4609 -1.2651 -0.0151 35 1 3.6372 -3.3111 0.2331 36 1 5.1359 -6.2902 0.3450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126722146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:20 Heat of formation + Delta-G solvation = 20.476933 kcal Electronic energy + Delta-G solvation = -18526.318722 eV Core-core repulsion = 15625.644838 eV Total energy + Delta-G solvation = -2900.673885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96014 -37.98755 -36.74015 -34.17191 -32.27421 -31.39516 -30.09306 -27.15653 -27.08871 -26.36860 -25.21252 -22.17653 -21.57711 -19.70879 -18.43990 -17.54872 -16.61905 -15.68975 -15.40560 -14.74704 -14.44127 -13.97365 -13.92411 -13.69489 -13.32860 -13.26075 -12.71073 -12.45841 -12.02414 -11.95702 -11.94869 -11.70439 -11.50134 -11.19547 -10.97410 -10.82235 -10.79274 -10.49413 -10.36905 -10.04217 -9.70206 -8.66825 -8.45118 -8.33226 -8.14002 -6.60494 -3.95882 2.04891 3.02105 3.05405 3.15688 3.19234 3.25331 4.05003 4.20682 4.64152 4.87884 4.97502 5.17439 5.20906 5.25337 5.48954 5.59799 5.69427 5.75967 5.81877 5.91121 5.94633 5.98870 6.02890 6.04961 6.06607 6.22836 6.36382 6.38539 6.47979 6.59353 7.06612 7.34530 7.38712 7.86651 8.40527 8.66084 8.98474 9.34311 9.86185 10.56083 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.005773 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.843664 B = 4849.141720 C = 5684.792601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.272 5.272 3 N -0.298 5.298 4 C 0.034 3.966 5 C 0.020 3.980 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.213 4.213 10 C 0.010 3.990 11 C 0.491 3.509 12 O -0.602 6.602 13 N -0.528 5.528 14 C -0.299 4.299 15 H 0.109 0.891 16 C 0.027 3.973 17 N -0.886 5.886 18 Si 0.936 3.064 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.267 1.267 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.153 0.847 35 H 0.397 0.603 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 11.800 -0.279 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.059 5.059 3 N -0.129 5.129 4 C -0.124 4.124 5 C 0.019 3.981 6 C -0.194 4.194 7 C -0.189 4.189 8 C -0.196 4.196 9 C -0.242 4.242 10 C -0.119 4.119 11 C 0.278 3.722 12 O -0.490 6.490 13 N -0.161 5.161 14 C -0.429 4.429 15 H 0.127 0.873 16 C -0.177 4.177 17 N -0.525 5.525 18 Si 0.762 3.238 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.127 0.873 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.171 0.829 35 H 0.232 0.768 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.628 12.392 -0.315 12.412 hybrid contribution 0.825 -1.514 0.048 1.725 sum 1.453 10.878 -0.267 10.978 Atomic orbital electron populations 1.22146 0.73279 1.04691 1.04333 1.45352 1.07347 1.01929 1.51225 1.72945 1.03555 1.13873 1.22532 1.21611 0.91391 0.93173 1.06198 1.18810 0.90503 0.92694 0.96140 1.21851 1.00093 1.02129 0.95326 1.21737 1.00527 0.94788 1.01844 1.21862 0.97550 1.01580 0.98565 1.21965 0.95949 0.94452 1.11838 1.21897 0.90611 0.90638 1.08742 1.16481 0.86429 0.82301 0.87003 1.90593 1.16056 1.83864 1.58489 1.41605 1.09662 1.05226 1.59615 1.19802 0.96259 0.80507 1.46291 0.87349 1.25400 0.94821 1.01000 0.96513 1.69601 1.01405 1.34499 1.47000 0.85762 0.78844 0.80704 0.78471 1.20102 1.20659 1.19145 0.90588 0.89886 0.87326 0.92737 0.92385 0.92126 0.92713 0.92927 0.92267 0.91912 0.92373 0.92548 0.82941 0.76814 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 10.71 59.84 0.64 2.18 16 2 N -0.27 -5.29 3.75 -63.88 -0.24 -5.52 16 3 N -0.30 -5.49 11.23 33.63 0.38 -5.11 16 4 C 0.03 0.59 5.65 -82.48 -0.47 0.12 16 5 C 0.02 0.27 0.96 -155.66 -0.15 0.12 16 6 C -0.14 -1.65 8.46 37.16 0.31 -1.33 16 7 C -0.13 -1.60 8.04 37.16 0.30 -1.31 16 8 C -0.14 -1.67 8.20 37.16 0.30 -1.36 16 9 C -0.21 -4.05 9.78 -38.95 -0.38 -4.43 16 10 C 0.01 0.21 6.96 -82.06 -0.57 -0.36 16 11 C 0.49 12.18 7.74 -12.70 -0.10 12.08 16 12 O -0.60 -16.12 14.38 5.21 0.07 -16.05 16 13 N -0.53 -13.50 5.26 -12.08 -0.06 -13.57 16 14 C -0.30 -8.11 9.68 -15.01 -0.15 -8.25 16 15 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.03 0.69 5.50 -17.45 -0.10 0.60 16 17 N -0.89 -23.22 13.05 55.50 0.72 -22.50 16 18 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.11 1.89 6.55 -51.93 -0.34 1.55 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.06 0.77 7.60 -51.93 -0.39 0.38 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.15 2.71 7.35 -52.48 -0.39 2.33 16 35 H 0.40 9.78 6.97 -40.82 -0.28 9.49 16 36 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -30.08 305.50 -5.03 -35.11 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.14 Total: 9.83 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.35 Total: -1.94 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.80 Total: -46.70 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.08 -5.03 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126722146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.586 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds