Wall clock time and date at job start Mon Mar 30 2020 00:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28443 * 125.19525 * 2 1 4 4 C 1.30875 * 110.95189 * 180.26596 * 3 2 1 5 5 C 1.50694 * 126.06340 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47157 * 255.02692 * 5 4 3 7 7 C 1.53007 * 109.46725 * 15.02710 * 5 4 3 8 8 C 1.53002 * 109.47316 * 135.02432 * 5 4 3 9 9 C 1.39645 * 107.87905 * 0.02562 * 4 3 2 10 10 C 1.36646 * 125.19349 * 180.30935 * 2 1 3 11 11 C 1.47024 * 126.89763 * 359.71236 * 10 2 1 12 12 O 1.21677 * 119.99600 * 5.01719 * 11 10 2 13 13 N 1.34770 * 120.00122 * 185.01960 * 11 10 2 14 14 C 1.36846 * 119.99990 * 185.12098 * 13 11 10 15 15 H 1.07993 * 119.99897 * 0.02562 * 14 13 11 16 16 C 1.39054 * 119.99971 * 179.97438 * 14 13 11 17 17 N 1.31367 * 119.99725 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46863 * 90.00218 * 18 16 14 20 20 H 1.48497 * 109.47371 * 210.00254 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00562 * 18 16 14 22 22 H 1.09008 * 109.47317 * 264.19392 * 1 2 3 23 23 H 1.08998 * 109.47250 * 24.19135 * 1 2 3 24 24 H 1.09003 * 109.47685 * 144.19350 * 1 2 3 25 25 H 1.08996 * 109.46924 * 59.99871 * 6 5 4 26 26 H 1.09006 * 109.46565 * 179.97438 * 6 5 4 27 27 H 1.08990 * 109.46957 * 299.99489 * 6 5 4 28 28 H 1.08998 * 109.47013 * 60.00071 * 7 5 4 29 29 H 1.09005 * 109.46811 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.47045 * 299.99776 * 7 5 4 31 31 H 1.08990 * 109.47311 * 60.00196 * 8 5 4 32 32 H 1.09006 * 109.46807 * 180.02562 * 8 5 4 33 33 H 1.09001 * 109.46963 * 300.00169 * 8 5 4 34 34 H 1.08004 * 127.32759 * 180.02562 * 9 4 3 35 35 H 0.96998 * 120.00120 * 5.12742 * 13 11 10 36 36 H 0.96999 * 119.99128 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0057 5 6 4.6333 1.6901 -0.0080 6 6 5.2583 1.7322 -1.4039 7 6 4.1373 3.0870 0.3711 8 6 5.6815 1.2284 1.0064 9 6 3.5623 -0.6660 -0.0103 10 6 2.2525 -1.1167 -0.0060 11 6 1.8004 -2.5157 -0.0077 12 8 0.6141 -2.7715 -0.0956 13 7 2.6999 -3.5147 0.0882 14 6 2.2910 -4.8162 -0.0185 15 1 1.2475 -5.0428 -0.1800 16 6 3.2192 -5.8469 0.0799 17 7 4.4885 -5.5712 0.2759 18 14 2.6610 -7.6235 -0.0665 19 1 2.7160 -8.0439 -1.4898 20 1 3.5553 -8.4916 0.7409 21 1 1.2679 -7.7475 0.4328 22 1 -0.3634 -0.1040 1.0225 23 1 -0.3633 0.9374 -0.4211 24 1 -0.3634 -0.8334 -0.6012 25 1 4.5116 2.0611 -2.1266 26 1 6.0968 2.4287 -1.4056 27 1 5.6117 0.7371 -1.6739 28 1 3.6920 3.0570 1.3655 29 1 4.9760 3.7833 0.3689 30 1 3.3906 3.4160 -0.3517 31 1 6.0348 0.2333 0.7364 32 1 6.5200 1.9249 1.0050 33 1 5.2362 1.1984 2.0008 34 1 4.4609 -1.2651 -0.0151 35 1 3.6372 -3.3111 0.2331 36 1 5.1359 -6.2902 0.3450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126722146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:20 Heat of formation + Delta-G solvation = 1.297513 kcal Electronic energy + Delta-G solvation = -18527.150404 eV Core-core repulsion = 15625.644838 eV Total energy + Delta-G solvation = -2901.505567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.46336 -39.92655 -37.87592 -36.15652 -33.85507 -33.17157 -31.72368 -28.24476 -28.03336 -27.67593 -27.12220 -23.87234 -22.95241 -21.26870 -20.35447 -19.05704 -18.27400 -17.20325 -17.18325 -16.39674 -15.90449 -15.59993 -15.27165 -14.96322 -14.84908 -14.82450 -14.28815 -13.66710 -13.61153 -13.33427 -12.98181 -12.93661 -12.90346 -12.49825 -12.47392 -12.17528 -12.11787 -11.91634 -11.80638 -11.62833 -11.36554 -10.64444 -10.20558 -9.98647 -9.77264 -8.57599 -6.03560 0.38296 1.42001 1.42865 1.53265 1.61517 1.65270 2.26512 2.33323 3.00157 3.20042 3.47011 3.80083 4.10163 4.14590 4.17474 4.31666 4.41081 4.44509 4.60615 4.70103 4.76984 4.87958 4.94610 4.98387 5.10534 5.11184 5.21758 5.29588 5.32849 5.51871 5.54037 5.61053 5.85216 5.89940 6.42450 6.95929 7.15448 7.36586 7.88676 8.59436 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.005773 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.843664 B = 4849.141720 C = 5684.792601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.275 5.275 3 N -0.294 5.294 4 C 0.037 3.963 5 C 0.017 3.983 6 C -0.133 4.133 7 C -0.127 4.127 8 C -0.136 4.136 9 C -0.204 4.204 10 C -0.025 4.025 11 C 0.493 3.507 12 O -0.629 6.629 13 N -0.535 5.535 14 C -0.337 4.337 15 H 0.089 0.911 16 C -0.006 4.006 17 N -0.907 5.907 18 Si 1.002 2.998 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.270 1.270 22 H 0.085 0.915 23 H 0.116 0.884 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.161 0.839 35 H 0.399 0.601 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 12.884 -0.297 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.062 5.062 3 N -0.125 5.125 4 C -0.121 4.121 5 C 0.015 3.985 6 C -0.191 4.191 7 C -0.185 4.185 8 C -0.194 4.194 9 C -0.234 4.234 10 C -0.154 4.154 11 C 0.280 3.720 12 O -0.518 6.518 13 N -0.169 5.169 14 C -0.466 4.466 15 H 0.107 0.893 16 C -0.208 4.208 17 N -0.545 5.545 18 Si 0.824 3.176 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.194 1.194 22 H 0.103 0.897 23 H 0.135 0.865 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.178 0.822 35 H 0.234 0.766 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.848 13.490 -0.331 13.620 hybrid contribution 0.461 -1.713 0.055 1.774 sum 2.310 11.778 -0.276 12.005 Atomic orbital electron populations 1.22308 0.71854 1.05733 1.04887 1.45666 1.08347 1.01401 1.50760 1.72982 1.04103 1.13330 1.22128 1.22296 0.92108 0.93146 1.04528 1.19058 0.89397 0.92489 0.97560 1.21844 1.00766 1.02536 0.93986 1.21710 1.01397 0.94392 1.00951 1.21869 0.97947 1.02068 0.97519 1.22184 0.95318 0.95574 1.10300 1.21570 0.92089 0.89661 1.12055 1.16929 0.85976 0.83562 0.85521 1.90556 1.17185 1.84790 1.59306 1.41595 1.09802 1.05142 1.60389 1.19807 0.95929 0.81791 1.49122 0.89295 1.26221 0.94717 1.04575 0.95267 1.69657 1.02110 1.35996 1.46776 0.84807 0.78323 0.75656 0.78833 1.19263 1.19266 1.19426 0.89678 0.86535 0.89153 0.93512 0.89418 0.92877 0.93587 0.90019 0.93072 0.92544 0.89461 0.93360 0.82172 0.76581 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.92 10.71 127.77 1.37 4.29 16 2 N -0.28 -10.61 3.75 -356.03 -1.34 -11.95 16 3 N -0.29 -10.50 11.23 -47.51 -0.53 -11.03 16 4 C 0.04 1.22 5.65 43.04 0.24 1.47 16 5 C 0.02 0.41 0.96 -52.93 -0.05 0.36 16 6 C -0.13 -2.87 8.46 71.98 0.61 -2.26 16 7 C -0.13 -2.74 8.04 71.98 0.58 -2.16 16 8 C -0.14 -2.94 8.20 71.98 0.59 -2.35 16 9 C -0.20 -7.74 9.78 22.68 0.22 -7.52 16 10 C -0.03 -1.09 6.96 40.77 0.28 -0.81 16 11 C 0.49 25.24 7.74 86.55 0.67 25.91 16 12 O -0.63 -34.97 14.38 -4.28 -0.06 -35.03 16 13 N -0.54 -28.32 5.26 -310.35 -1.63 -29.95 16 14 C -0.34 -18.86 9.68 84.11 0.81 -18.05 16 15 H 0.09 5.22 7.16 -2.91 -0.02 5.20 16 16 C -0.01 -0.29 5.50 84.96 0.47 0.17 16 17 N -0.91 -47.53 13.05 21.68 0.28 -47.25 16 18 Si 1.00 41.21 29.55 68.60 2.03 43.24 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 23 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 24 H 0.09 3.23 6.55 -2.39 -0.02 3.21 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 31 H 0.06 1.28 7.60 -2.39 -0.02 1.27 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.16 5.69 7.35 -2.91 -0.02 5.67 16 35 H 0.40 20.25 6.97 -92.71 -0.65 19.60 16 36 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -65.11 305.50 4.98 -60.13 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.43 Total: 32.79 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.79 Total: -0.95 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.22 Total: -100.18 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.06 Total: -35.03 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.11 4.98 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126722146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.429 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds