Wall clock time and date at job start Mon Mar 30 2020 00:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.52997 * 109.46988 * 119.99688 * 2 1 3 5 5 C 1.53004 * 109.47000 * 65.00187 * 4 2 1 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 2 7 7 O 1.21303 * 119.99816 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.40595 * 119.99527 * 179.72943 * 8 6 5 10 10 C 1.40649 * 126.08553 * 359.68015 * 9 8 6 11 11 N 1.30903 * 108.38945 * 179.87998 * 10 9 8 12 12 N 1.40074 * 108.40705 * 0.38914 * 11 10 9 13 13 C 1.37320 * 126.07077 * 179.73305 * 12 11 10 14 14 H 1.07999 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.38983 * 120.00055 * 0.02562 * 13 12 11 16 16 N 1.31296 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47382 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46738 * 120.00166 * 17 15 13 20 20 H 1.48494 * 109.47440 * 239.99960 * 17 15 13 21 21 C 1.35679 * 126.07814 * 179.97438 * 9 8 6 22 22 H 1.09005 * 109.47241 * 59.99761 * 1 2 3 23 23 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47218 * 300.00003 * 1 2 3 25 25 H 1.08993 * 109.47286 * 240.00006 * 2 1 3 26 26 H 1.09005 * 109.47019 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47178 * 299.99560 * 3 2 1 28 28 H 1.08999 * 109.47409 * 60.00285 * 3 2 1 29 29 H 1.08995 * 109.47672 * 305.00518 * 4 2 1 30 30 H 1.08998 * 109.47443 * 184.99972 * 4 2 1 31 31 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 32 32 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 33 33 H 0.97001 * 120.00485 * 359.71840 * 8 6 5 34 34 H 1.07999 * 125.80209 * 0.02562 * 10 9 8 35 35 H 0.97004 * 120.00252 * 179.97438 * 16 15 13 36 36 H 1.07996 * 126.24944 * 359.92772 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 6 2.1380 -2.9060 2.4182 7 8 2.7595 -2.2935 3.2609 8 7 1.9025 -4.2232 2.5791 9 6 2.3765 -4.8873 3.7241 10 6 3.1118 -4.3071 4.7734 11 7 3.3705 -5.2357 5.6591 12 7 2.8206 -6.4425 5.2082 13 6 2.8838 -7.6517 5.8558 14 1 2.4234 -8.5243 5.4165 15 6 3.5401 -7.7526 7.0768 16 7 4.0994 -6.6917 7.6111 17 14 3.6254 -9.3974 7.9582 18 1 2.9220 -10.4278 7.1527 19 1 5.0464 -9.7918 8.1336 20 1 2.9764 -9.2803 9.2886 21 6 2.2108 -6.2031 4.0107 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6053 -0.2618 2.1370 30 1 3.1263 -0.6443 1.2952 31 1 2.0699 -2.6549 0.3002 32 1 0.5489 -2.2723 1.1420 33 1 1.4058 -4.7130 1.9051 34 1 3.4101 -3.2712 4.8384 35 1 4.5571 -6.7620 8.4635 36 1 1.6910 -6.9285 3.4026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139776550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:53 Heat of formation + Delta-G solvation = 22.265777 kcal Electronic energy + Delta-G solvation = -17766.163711 eV Core-core repulsion = 14865.567397 eV Total energy + Delta-G solvation = -2900.596315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87681 -38.67838 -36.55665 -34.12550 -33.10148 -31.00547 -30.11250 -27.71019 -27.29630 -25.15296 -23.95759 -20.98529 -20.25513 -19.77608 -19.33299 -17.45683 -16.33522 -15.70140 -15.42166 -15.19508 -14.66809 -14.16767 -13.96446 -13.62970 -13.32871 -12.95385 -12.80635 -12.50294 -12.31147 -11.82765 -11.65668 -11.38613 -11.35456 -11.24057 -10.90267 -10.84063 -10.69874 -10.56864 -10.48986 -10.09328 -9.13117 -9.06949 -8.76094 -8.01882 -6.64692 -6.52805 -4.19426 2.89142 3.06587 3.08778 3.12550 3.68063 3.72426 3.92462 4.47077 4.71158 4.76927 4.81863 4.91055 5.04961 5.21434 5.32623 5.42047 5.49399 5.57551 5.66536 5.73269 5.83406 5.97675 5.99243 6.11980 6.28053 6.30437 6.40972 6.51723 6.95412 7.01362 7.18797 7.29768 7.89815 8.24971 8.35140 8.68504 8.95398 9.41980 9.71310 10.43384 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.075925 B = 0.003614 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.695735 B = 7746.095437 C = 8011.349996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.098 4.098 5 C -0.137 4.137 6 C 0.495 3.505 7 O -0.538 6.538 8 N -0.629 5.629 9 C -0.059 4.059 10 C -0.035 4.035 11 N -0.261 5.261 12 N -0.145 5.145 13 C -0.323 4.323 14 H 0.116 0.884 15 C 0.045 3.955 16 N -0.771 5.771 17 Si 0.935 3.065 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.085 4.085 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.396 0.604 34 H 0.176 0.824 35 H 0.274 0.726 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 6.872 -13.422 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.136 4.136 5 C -0.177 4.177 6 C 0.282 3.718 7 O -0.416 6.416 8 N -0.271 5.271 9 C -0.165 4.165 10 C -0.210 4.210 11 N -0.092 5.092 12 N 0.088 4.912 13 C -0.456 4.456 14 H 0.134 0.866 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.759 3.241 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.236 4.236 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.192 0.808 35 H 0.084 0.916 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.035 7.126 -11.490 14.427 hybrid contribution -0.695 -0.925 -0.834 1.427 sum -5.731 6.201 -12.324 14.939 Atomic orbital electron populations 1.21917 0.95438 1.01818 1.01584 1.21154 0.95783 0.96303 0.98452 1.21826 1.01087 0.95975 1.01538 1.21386 1.01859 0.92763 0.97636 1.21677 1.02432 0.96930 0.96637 1.20526 0.81167 0.81739 0.88389 1.90586 1.40833 1.65855 1.44303 1.42602 1.54555 1.08696 1.21254 1.17324 1.14150 0.91835 0.93164 1.24112 1.03529 1.00281 0.93102 1.78240 1.21372 0.88701 1.20874 1.44551 1.29271 1.06994 1.10433 1.19902 1.37579 0.84377 1.03697 0.86636 1.25641 0.95358 0.99304 0.96841 1.70232 1.25473 1.28215 1.15816 0.85768 0.78661 0.80358 0.79362 1.18724 1.19938 1.19936 1.21267 1.12391 0.95561 0.94398 0.93029 0.92454 0.92611 0.91328 0.92638 0.92972 0.92622 0.91123 0.91151 0.89486 0.89284 0.77138 0.80753 0.91563 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 37.16 0.33 -0.90 16 2 C -0.10 -0.89 2.92 -90.62 -0.26 -1.15 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.10 -1.15 3.97 -26.73 -0.11 -1.26 16 5 C -0.14 -1.60 5.46 -27.88 -0.15 -1.75 16 6 C 0.50 8.66 7.80 -10.98 -0.09 8.58 16 7 O -0.54 -11.71 13.13 5.54 0.07 -11.64 16 8 N -0.63 -11.33 5.47 -10.00 -0.05 -11.38 16 9 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 10 C -0.03 -0.94 10.85 -17.04 -0.18 -1.13 16 11 N -0.26 -7.76 10.40 30.80 0.32 -7.44 16 12 N -0.14 -4.05 3.74 -11.41 -0.04 -4.09 16 13 C -0.32 -8.70 10.25 -14.82 -0.15 -8.85 16 14 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 16 N -0.77 -21.88 11.81 55.49 0.66 -21.22 16 17 Si 0.93 19.16 29.55 -169.99 -5.02 14.14 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.09 -2.05 11.49 -16.39 -0.19 -2.24 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 24 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.09 0.87 6.56 -51.93 -0.34 0.53 16 33 H 0.40 5.43 8.83 -40.82 -0.36 5.07 16 34 H 0.18 4.70 5.92 -52.49 -0.31 4.39 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.14 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -33.54 303.96 -5.75 -39.29 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.12 Total: 8.25 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.13 Total: -10.48 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.88 Total: -44.14 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.54 -5.75 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139776550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.555 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds