Wall clock time and date at job start Mon Mar 30 2020 00:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.52997 * 109.46988 * 119.99688 * 2 1 3 5 5 C 1.53004 * 109.47000 * 65.00187 * 4 2 1 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 2 7 7 O 1.21303 * 119.99816 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.40595 * 119.99527 * 179.72943 * 8 6 5 10 10 C 1.40649 * 126.08553 * 359.68015 * 9 8 6 11 11 N 1.30903 * 108.38945 * 179.87998 * 10 9 8 12 12 N 1.40074 * 108.40705 * 0.38914 * 11 10 9 13 13 C 1.37320 * 126.07077 * 179.73305 * 12 11 10 14 14 H 1.07999 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.38983 * 120.00055 * 0.02562 * 13 12 11 16 16 N 1.31296 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47382 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46738 * 120.00166 * 17 15 13 20 20 H 1.48494 * 109.47440 * 239.99960 * 17 15 13 21 21 C 1.35679 * 126.07814 * 179.97438 * 9 8 6 22 22 H 1.09005 * 109.47241 * 59.99761 * 1 2 3 23 23 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47218 * 300.00003 * 1 2 3 25 25 H 1.08993 * 109.47286 * 240.00006 * 2 1 3 26 26 H 1.09005 * 109.47019 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47178 * 299.99560 * 3 2 1 28 28 H 1.08999 * 109.47409 * 60.00285 * 3 2 1 29 29 H 1.08995 * 109.47672 * 305.00518 * 4 2 1 30 30 H 1.08998 * 109.47443 * 184.99972 * 4 2 1 31 31 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 32 32 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 33 33 H 0.97001 * 120.00485 * 359.71840 * 8 6 5 34 34 H 1.07999 * 125.80209 * 0.02562 * 10 9 8 35 35 H 0.97004 * 120.00252 * 179.97438 * 16 15 13 36 36 H 1.07996 * 126.24944 * 359.92772 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 6 2.1380 -2.9060 2.4182 7 8 2.7595 -2.2935 3.2609 8 7 1.9025 -4.2232 2.5791 9 6 2.3765 -4.8873 3.7241 10 6 3.1118 -4.3071 4.7734 11 7 3.3705 -5.2357 5.6591 12 7 2.8206 -6.4425 5.2082 13 6 2.8838 -7.6517 5.8558 14 1 2.4234 -8.5243 5.4165 15 6 3.5401 -7.7526 7.0768 16 7 4.0994 -6.6917 7.6111 17 14 3.6254 -9.3974 7.9582 18 1 2.9220 -10.4278 7.1527 19 1 5.0464 -9.7918 8.1336 20 1 2.9764 -9.2803 9.2886 21 6 2.2108 -6.2031 4.0107 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6053 -0.2618 2.1370 30 1 3.1263 -0.6443 1.2952 31 1 2.0699 -2.6549 0.3002 32 1 0.5489 -2.2723 1.1420 33 1 1.4058 -4.7130 1.9051 34 1 3.4101 -3.2712 4.8384 35 1 4.5571 -6.7620 8.4635 36 1 1.6910 -6.9285 3.4026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139776550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:53 Heat of formation + Delta-G solvation = -0.310166 kcal Electronic energy + Delta-G solvation = -17767.142677 eV Core-core repulsion = 14865.567397 eV Total energy + Delta-G solvation = -2901.575281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68595 -40.28065 -37.44744 -35.87173 -34.92883 -32.38860 -31.80067 -29.52016 -27.93961 -26.94033 -25.22772 -22.85046 -21.72741 -21.13560 -20.68954 -19.28701 -17.79457 -17.37508 -16.90511 -16.69797 -15.81528 -15.67882 -15.18926 -15.08435 -14.85857 -14.49168 -14.13479 -13.52563 -13.46559 -13.28156 -13.00835 -12.92603 -12.84142 -12.57704 -12.17436 -12.02700 -11.82115 -11.60703 -11.45647 -11.38683 -11.00677 -10.83103 -10.57760 -10.09947 -8.50445 -8.46792 -6.23923 1.23253 1.39951 1.56813 1.59271 1.89096 2.07773 2.38197 2.55022 2.95114 3.09256 3.87163 3.93895 4.04925 4.26542 4.42770 4.45374 4.61119 4.62814 4.72742 4.85945 4.91896 5.01003 5.01339 5.09738 5.14435 5.20359 5.26703 5.30505 5.37604 5.51100 5.56828 5.60475 5.96915 6.33486 6.74691 6.83605 7.45391 7.51300 7.69857 8.53021 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.075925 B = 0.003614 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.695735 B = 7746.095437 C = 8011.349996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.098 4.098 5 C -0.121 4.121 6 C 0.490 3.510 7 O -0.586 6.586 8 N -0.620 5.620 9 C -0.045 4.045 10 C -0.064 4.064 11 N -0.311 5.311 12 N -0.170 5.170 13 C -0.354 4.354 14 H 0.142 0.858 15 C -0.009 4.009 16 N -0.826 5.826 17 Si 1.021 2.979 18 H -0.240 1.240 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.082 4.082 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.421 0.579 34 H 0.165 0.835 35 H 0.276 0.724 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 5.433 -15.891 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.136 4.136 5 C -0.161 4.161 6 C 0.279 3.721 7 O -0.466 6.466 8 N -0.266 5.266 9 C -0.151 4.151 10 C -0.239 4.239 11 N -0.144 5.144 12 N 0.061 4.939 13 C -0.485 4.485 14 H 0.159 0.841 15 C -0.220 4.220 16 N -0.455 5.455 17 Si 0.840 3.160 18 H -0.162 1.162 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.232 4.232 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.258 0.742 34 H 0.182 0.818 35 H 0.085 0.915 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.755 5.693 -14.030 16.579 hybrid contribution -0.202 -0.348 -0.177 0.440 sum -6.956 5.345 -14.207 16.697 Atomic orbital electron populations 1.21927 0.94469 1.02523 1.01852 1.21115 0.96494 0.96119 0.97278 1.21849 1.00844 0.96016 1.01937 1.21372 1.00596 0.93246 0.98396 1.21723 1.04174 0.95864 0.94308 1.21718 0.79689 0.81286 0.89396 1.90579 1.42762 1.66797 1.46432 1.42605 1.54706 1.09094 1.20169 1.17430 1.12137 0.91793 0.93773 1.24152 1.05244 0.99831 0.94685 1.78134 1.23310 0.90159 1.22779 1.44863 1.30338 1.06853 1.11876 1.20666 1.38373 0.84883 1.04565 0.84098 1.26914 0.94121 1.03616 0.97347 1.70417 1.27121 1.31345 1.16578 0.84514 0.78699 0.75086 0.77736 1.16229 1.19803 1.19800 1.22027 1.11225 0.96522 0.93475 0.91677 0.91516 0.93515 0.89752 0.93131 0.91394 0.93419 0.93291 0.93137 0.86167 0.86256 0.74214 0.81816 0.91454 0.79410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.95 71.98 0.64 -1.36 16 2 C -0.09 -1.42 2.92 -10.79 -0.03 -1.45 16 3 C -0.15 -2.32 9.19 71.98 0.66 -1.66 16 4 C -0.10 -2.17 3.97 30.59 0.12 -2.05 16 5 C -0.12 -2.47 5.46 29.85 0.16 -2.31 16 6 C 0.49 16.57 7.80 87.66 0.68 17.26 16 7 O -0.59 -26.10 13.13 -3.10 -0.04 -26.15 16 8 N -0.62 -21.14 5.47 -303.92 -1.66 -22.80 16 9 C -0.05 -2.11 6.90 37.73 0.26 -1.85 16 10 C -0.06 -3.61 10.85 85.42 0.93 -2.68 16 11 N -0.31 -19.32 10.40 -56.47 -0.59 -19.91 16 12 N -0.17 -9.63 3.74 -190.02 -0.71 -10.35 16 13 C -0.35 -19.01 10.25 84.01 0.86 -18.15 16 14 H 0.14 6.54 7.83 -2.91 -0.02 6.51 16 15 C -0.01 -0.46 5.50 84.95 0.47 0.00 16 16 N -0.83 -48.65 11.81 21.66 0.26 -48.39 16 17 Si 1.02 39.07 29.55 68.60 2.03 41.10 16 18 H -0.24 -8.15 7.11 99.48 0.71 -7.45 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 21 C -0.08 -3.86 11.49 83.37 0.96 -2.91 16 22 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 23 H 0.07 0.76 6.56 -2.39 -0.02 0.74 16 24 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.12 1.81 6.56 -2.39 -0.02 1.79 16 33 H 0.42 10.01 8.83 -92.71 -0.82 9.20 16 34 H 0.16 9.40 5.92 -2.91 -0.02 9.38 16 35 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.19 6.88 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -77.74 303.96 5.26 -72.48 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.26 Total: 31.18 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.72 Total: -17.16 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -2.70 Total: -101.45 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -77.74 5.26 -72.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139776550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.171 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds