Wall clock time and date at job start Sun Mar 29 2020 23:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29954 * 126.28972 * 2 1 4 4 O 1.21301 * 110.24749 * 180.02562 * 3 2 1 5 5 C 1.33636 * 109.81785 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.55484 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.46607 * 270.02221 * 6 5 4 8 8 C 1.36934 * 119.99833 * 269.99677 * 7 6 5 9 9 H 1.08004 * 119.99853 * 141.40881 * 8 7 6 10 10 C 1.38807 * 120.00136 * 321.40286 * 8 7 6 11 11 N 1.31619 * 120.00153 * 339.32923 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 159.32357 * 10 8 7 13 13 H 1.48504 * 109.46973 * 90.00602 * 12 10 8 14 14 H 1.48502 * 109.47243 * 210.00402 * 12 10 8 15 15 H 1.48499 * 109.47023 * 330.00566 * 12 10 8 16 16 C 1.46504 * 119.99897 * 90.00146 * 7 6 5 17 17 C 1.55238 * 110.57702 * 239.25450 * 16 7 6 18 18 C 1.54894 * 102.58490 * 203.33805 * 17 16 7 19 19 C 1.54265 * 104.31096 * 37.92998 * 18 17 16 20 20 C 1.53868 * 106.60349 * 336.32572 * 19 18 17 21 21 N 1.31137 * 106.89577 * 0.22793 * 5 4 3 22 22 H 1.08997 * 109.46815 * 89.97328 * 1 2 3 23 23 H 1.08998 * 109.47487 * 209.97358 * 1 2 3 24 24 H 1.08999 * 109.47127 * 329.97869 * 1 2 3 25 25 H 1.08999 * 109.47564 * 150.02661 * 6 5 4 26 26 H 1.08999 * 109.47093 * 30.01991 * 6 5 4 27 27 H 0.97003 * 120.00150 * 179.97438 * 11 10 8 28 28 H 1.09000 * 110.43443 * 1.83683 * 16 7 6 29 29 H 1.08996 * 110.90060 * 85.04678 * 17 16 7 30 30 H 1.08997 * 110.76748 * 321.56797 * 17 16 7 31 31 H 1.09000 * 110.48637 * 279.18728 * 18 17 16 32 32 H 1.09000 * 110.48357 * 156.67747 * 18 17 16 33 33 H 1.09005 * 110.03139 * 95.61022 * 19 18 17 34 34 H 1.09001 * 110.03216 * 216.98313 * 19 18 17 35 35 H 1.08998 * 110.03722 * 119.28178 * 20 19 18 36 36 H 1.09001 * 110.03223 * 240.66907 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7969 -1.4371 -0.0014 7 7 5.2064 -1.7012 -1.3830 8 6 4.7558 -2.8218 -2.0283 9 1 4.4903 -2.7727 -3.0741 10 6 4.6403 -4.0208 -1.3385 11 7 5.3177 -4.2076 -0.2256 12 14 3.5234 -5.3691 -1.9897 13 1 4.2942 -6.2537 -2.9000 14 1 2.9961 -6.1669 -0.8535 15 1 2.3921 -4.7587 -2.7332 16 6 6.0981 -0.7666 -2.0741 17 6 5.4185 -0.2092 -3.3537 18 6 6.6293 0.2178 -4.2203 19 6 7.6867 -0.8756 -3.9630 20 6 7.3490 -1.5015 -2.5985 21 7 2.3030 -1.0841 -0.0047 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 4.6210 -2.3822 0.5124 26 1 5.5846 -0.8856 0.5119 27 1 5.2367 -5.0454 0.2567 28 1 6.3849 0.0480 -1.4091 29 1 4.7904 0.6498 -3.1177 30 1 4.8402 -0.9860 -3.8539 31 1 7.0019 1.1913 -3.9019 32 1 6.3541 0.2418 -5.2747 33 1 7.6372 -1.6341 -4.7442 34 1 8.6824 -0.4329 -3.9355 35 1 7.1356 -2.5637 -2.7175 36 1 8.1810 -1.3631 -1.9081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156602077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:12 Heat of formation + Delta-G solvation = 56.906063 kcal Electronic energy + Delta-G solvation = -19175.541359 eV Core-core repulsion = 16276.447160 eV Total energy + Delta-G solvation = -2899.094199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.29184 -39.36590 -36.91883 -36.34770 -34.01605 -32.77988 -30.08055 -29.35264 -28.96622 -27.93490 -24.98831 -24.07275 -22.13885 -21.32833 -20.77383 -19.04432 -18.52580 -17.87429 -17.21834 -16.52456 -16.00460 -15.72470 -15.16612 -14.90602 -14.40939 -14.37311 -14.05837 -13.83864 -13.43206 -13.14921 -12.92470 -12.84622 -12.60023 -12.35951 -12.13225 -11.96803 -11.92550 -11.82499 -11.78283 -11.76128 -11.27621 -11.08301 -10.69838 -10.52681 -8.67914 -7.94744 -5.53150 0.32232 1.40288 1.46147 1.48953 1.56249 2.11295 2.49259 2.98079 3.23932 3.31508 3.52324 3.97978 4.01890 4.26168 4.28661 4.53769 4.57224 4.63744 4.67325 4.76948 4.85240 4.89462 4.91265 4.99671 5.13651 5.15835 5.23991 5.26015 5.32730 5.37963 5.50248 5.64109 5.66595 5.79354 6.43523 7.06410 7.37567 7.71707 8.23367 9.06116 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.010596 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.794931 B = 2641.988207 C = 3922.474341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.151 3.849 3 N -0.420 5.420 4 O 0.048 5.952 5 C 0.193 3.807 6 C 0.223 3.777 7 N -0.564 5.564 8 C -0.258 4.258 9 H 0.050 0.950 10 C -0.010 4.010 11 N -0.901 5.901 12 Si 0.945 3.055 13 H -0.281 1.281 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.158 3.842 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.124 4.124 21 N -0.518 5.518 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.257 0.743 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 7.796 -1.982 8.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 N -0.137 5.137 4 O -0.003 6.003 5 C -0.030 4.030 6 C 0.092 3.908 7 N -0.283 5.283 8 C -0.388 4.388 9 H 0.068 0.932 10 C -0.209 4.209 11 N -0.544 5.544 12 Si 0.773 3.227 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.209 1.209 16 C 0.052 3.948 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.163 4.163 21 N -0.254 5.254 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.346 8.136 -1.882 8.459 hybrid contribution -0.611 -1.084 -0.207 1.261 sum -1.957 7.052 -2.089 7.611 Atomic orbital electron populations 1.20251 0.80624 1.05469 1.04986 1.26749 1.02172 0.83572 0.99649 1.74436 0.89992 1.24867 1.24395 1.85197 1.22281 1.26032 1.66746 1.31663 0.99272 0.80938 0.91132 1.19908 0.84660 0.96689 0.89500 1.43969 1.50530 1.22680 1.11085 1.18803 1.38430 0.86402 0.95135 0.93205 1.25621 0.98687 0.98517 0.98072 1.69970 1.39807 1.25529 1.19057 0.85662 0.79672 0.79809 0.77540 1.20699 1.21511 1.20917 1.21719 0.89368 0.90975 0.92704 1.22839 0.97822 0.98740 0.97805 1.22236 0.94651 0.98772 0.99269 1.22030 0.99105 0.97667 0.96344 1.22344 0.97114 1.00338 0.96527 1.71992 1.01015 1.30059 1.22316 0.88621 0.88553 0.87860 0.87027 0.89259 0.93341 0.90940 0.93655 0.93656 0.90419 0.91401 0.92749 0.90443 0.93262 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.44 10.51 71.24 0.75 -0.69 16 2 C 0.15 5.76 8.22 138.46 1.14 6.90 16 3 N -0.42 -16.57 12.16 -60.30 -0.73 -17.31 16 4 O 0.05 1.97 11.31 74.90 0.85 2.81 16 5 C 0.19 8.34 8.10 88.38 0.72 9.05 16 6 C 0.22 9.84 5.90 85.63 0.51 10.35 16 7 N -0.56 -25.88 2.44 -675.68 -1.65 -27.53 16 8 C -0.26 -13.23 7.76 84.03 0.65 -12.57 16 9 H 0.05 2.67 6.69 -2.91 -0.02 2.65 16 10 C -0.01 -0.50 4.96 84.86 0.42 -0.08 16 11 N -0.90 -48.46 11.50 21.65 0.25 -48.21 16 12 Si 0.94 43.92 29.60 68.60 2.03 45.95 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 16 C 0.16 6.10 3.39 46.19 0.16 6.26 16 17 C -0.13 -4.78 6.47 32.01 0.21 -4.57 16 18 C -0.11 -3.11 6.82 31.67 0.22 -2.89 16 19 C -0.11 -3.29 6.80 31.32 0.21 -3.07 16 20 C -0.12 -4.53 6.41 31.32 0.20 -4.33 16 21 N -0.52 -23.11 11.55 -303.18 -3.50 -26.61 16 22 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.11 5.61 5.56 -2.39 -0.01 5.59 16 26 H 0.09 3.43 7.93 -2.39 -0.02 3.41 16 27 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 28 H 0.07 2.57 7.84 -2.39 -0.02 2.55 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.86 6.59 -2.39 -0.02 1.84 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 2.17 6.95 -2.39 -0.02 2.16 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -59.43 298.37 3.49 -55.94 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.07 Total: 10.61 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.17 Total: 4.34 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.64 Total: -119.66 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.85 Total: 2.81 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.43 3.49 -55.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156602077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.845 kcal (2) G-P(sol) polarization free energy of solvation -59.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds