Wall clock time and date at job start Sun Mar 29 2020 23:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30268 * 126.28344 * 2 1 4 4 N 1.28658 * 109.38243 * 180.02562 * 3 2 1 5 5 C 1.30268 * 109.38291 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.28546 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47240 * 90.02016 * 6 5 4 8 8 C 1.36934 * 119.99788 * 270.00099 * 7 6 5 9 9 H 1.08004 * 119.99853 * 141.41882 * 8 7 6 10 10 C 1.38807 * 120.00136 * 321.41287 * 8 7 6 11 11 N 1.31619 * 120.00153 * 339.32923 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 159.32357 * 10 8 7 13 13 H 1.48501 * 109.46893 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47126 * 120.00169 * 12 10 8 15 15 H 1.48501 * 109.47298 * 240.00397 * 12 10 8 16 16 C 1.46501 * 119.99639 * 90.00191 * 7 6 5 17 17 C 1.55237 * 110.57968 * 239.43732 * 16 7 6 18 18 C 1.54890 * 102.59049 * 203.34243 * 17 16 7 19 19 C 1.54265 * 104.31021 * 37.93283 * 18 17 16 20 20 C 1.53870 * 106.59917 * 336.32606 * 19 18 17 21 21 O 1.34359 * 126.28047 * 180.29465 * 2 1 3 22 22 H 1.09001 * 109.47216 * 89.97139 * 1 2 3 23 23 H 1.09000 * 109.47173 * 209.97087 * 1 2 3 24 24 H 1.09000 * 109.47114 * 329.97013 * 1 2 3 25 25 H 1.09002 * 109.47228 * 330.01898 * 6 5 4 26 26 H 1.09003 * 109.46921 * 210.01937 * 6 5 4 27 27 H 0.97003 * 120.00150 * 179.97438 * 11 10 8 28 28 H 1.08993 * 110.43912 * 2.02680 * 16 7 6 29 29 H 1.09000 * 110.89833 * 85.05088 * 17 16 7 30 30 H 1.09000 * 110.76700 * 321.57395 * 17 16 7 31 31 H 1.09000 * 110.48291 * 279.18958 * 18 17 16 32 32 H 1.08998 * 110.48390 * 156.67873 * 18 17 16 33 33 H 1.08995 * 110.03145 * 95.61011 * 19 18 17 34 34 H 1.09000 * 110.03030 * 216.98964 * 19 18 17 35 35 H 1.08994 * 110.03338 * 119.29204 * 20 19 18 36 36 H 1.09009 * 110.02935 * 240.66926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5089 0.6761 -0.0005 5 6 3.5653 -0.6254 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 7 5.2241 -1.7369 1.3779 8 6 6.0738 -0.8790 2.0238 9 1 5.9243 -0.6568 3.0701 10 6 7.1273 -0.2952 1.3339 11 7 7.5668 -0.8405 0.2195 12 14 7.9212 1.2646 1.9869 13 1 7.2484 1.6724 3.2464 14 1 9.3602 1.0132 2.2539 15 1 7.7863 2.3477 0.9800 16 6 4.7214 -2.9277 2.0675 17 6 3.9371 -2.5275 3.3460 18 6 4.0271 -3.8085 4.2121 19 6 5.4519 -4.3420 3.9569 20 6 5.8933 -3.7819 2.5935 21 8 2.3021 -1.0831 -0.0056 22 1 -0.3634 0.0005 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5143 25 1 5.6144 -0.9260 -0.5166 26 1 4.6241 -2.4050 -0.5175 27 1 8.3028 -0.4323 -0.2628 28 1 4.0900 -3.5153 1.4012 29 1 2.8993 -2.2941 3.1084 30 1 4.4180 -1.6877 3.8475 31 1 3.2834 -4.5384 3.8920 32 1 3.8935 -3.5663 5.2664 33 1 6.1264 -3.9945 4.7394 34 1 5.4431 -5.4316 3.9288 35 1 6.7821 -3.1627 2.7142 36 1 6.0995 -4.5998 1.9029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156648661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:29 Heat of formation + Delta-G solvation = 43.784061 kcal Electronic energy + Delta-G solvation = -19145.007860 eV Core-core repulsion = 16245.344648 eV Total energy + Delta-G solvation = -2899.663212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33346 -37.82352 -35.30741 -34.76211 -32.41036 -31.18742 -28.83838 -27.95268 -26.65191 -25.86730 -23.10519 -21.88923 -21.21731 -19.92837 -19.25499 -16.96600 -16.53078 -15.99271 -15.55734 -14.95122 -14.32432 -14.20602 -13.90431 -13.50472 -12.99459 -12.93137 -12.64800 -12.56113 -11.59387 -11.56803 -11.26676 -11.24223 -10.99759 -10.77745 -10.67048 -10.52325 -10.40452 -10.36374 -10.15274 -10.00930 -9.83133 -9.60226 -8.70320 -8.58889 -6.83669 -6.00053 -3.56917 1.93442 3.06018 3.22018 3.37018 3.46191 3.48715 4.39898 4.57382 5.07979 5.16269 5.21224 5.33245 5.38519 5.40635 5.48260 5.61640 5.66617 6.04298 6.07957 6.13313 6.17517 6.26184 6.30023 6.37588 6.39654 6.50260 6.53406 6.60757 6.72352 6.95012 7.01478 7.15656 7.30346 7.74400 8.33355 8.95538 9.17765 9.58811 10.12762 11.03915 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.010524 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.246716 B = 2659.966609 C = 4016.630385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.114 3.886 3 N -0.295 5.295 4 N -0.297 5.297 5 C 0.178 3.822 6 C 0.224 3.776 7 N -0.554 5.554 8 C -0.263 4.263 9 H 0.066 0.934 10 C 0.028 3.972 11 N -0.882 5.882 12 Si 0.902 3.098 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.282 1.282 16 C 0.168 3.832 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.129 4.129 21 O -0.238 6.238 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.140 0.860 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -5.179 1.451 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 N -0.144 5.144 4 N -0.143 5.143 5 C -0.035 4.035 6 C 0.093 3.907 7 N -0.271 5.271 8 C -0.392 4.392 9 H 0.083 0.917 10 C -0.174 4.174 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.200 1.200 14 H -0.216 1.216 15 H -0.208 1.208 16 C 0.061 3.939 17 C -0.175 4.175 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.168 4.168 21 O -0.118 6.118 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.157 0.843 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.972 -3.923 1.347 9.884 hybrid contribution -0.062 -0.277 0.361 0.460 sum -9.033 -4.200 1.709 10.107 Atomic orbital electron populations 1.20107 0.81633 1.04669 1.04129 1.27689 0.97459 0.81009 1.03606 1.74265 0.97108 1.26299 1.16695 1.74394 1.10469 1.10461 1.18997 1.31278 0.84988 0.92745 0.94528 1.20082 0.85486 0.95346 0.89762 1.43881 1.49832 1.22371 1.10998 1.18907 1.04304 1.20405 0.95627 0.91688 1.25195 0.95456 0.99221 0.97534 1.69899 1.26222 1.37949 1.18242 0.86262 0.78261 0.83469 0.78974 1.19973 1.21575 1.20831 1.21454 0.93002 0.87342 0.92095 1.22939 0.99242 0.97357 0.97984 1.22266 0.96946 0.97668 0.99064 1.22068 0.96293 0.98904 0.98535 1.22449 1.01261 0.98724 0.94351 1.84818 1.18614 1.38349 1.70035 0.89377 0.89772 0.88530 0.84254 0.92046 0.92999 0.92709 0.93500 0.90859 0.92633 0.92804 0.92554 0.93131 0.89426 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.11 2.08 8.48 -12.94 -0.11 1.97 16 3 N -0.30 -6.44 12.22 32.55 0.40 -6.04 16 4 N -0.30 -7.25 12.22 32.55 0.40 -6.86 16 5 C 0.18 4.02 8.06 -12.94 -0.10 3.92 16 6 C 0.22 5.11 5.90 -5.19 -0.03 5.08 16 7 N -0.55 -12.98 2.44 -164.93 -0.40 -13.38 16 8 C -0.26 -6.81 7.76 -15.06 -0.12 -6.93 16 9 H 0.07 1.73 6.70 -52.48 -0.35 1.38 16 10 C 0.03 0.73 4.96 -17.43 -0.09 0.64 16 11 N -0.88 -23.80 11.50 55.49 0.64 -23.16 16 12 Si 0.90 21.70 29.60 -169.99 -5.03 16.67 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 C 0.17 3.37 3.39 -66.08 -0.22 3.14 16 17 C -0.14 -2.53 6.47 -24.55 -0.16 -2.69 16 18 C -0.12 -1.86 6.82 -25.07 -0.17 -2.03 16 19 C -0.12 -1.89 6.80 -25.62 -0.17 -2.07 16 20 C -0.13 -2.44 6.41 -25.62 -0.16 -2.61 16 21 O -0.24 -4.79 10.87 5.40 0.06 -4.73 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.14 3.55 5.56 -51.93 -0.29 3.27 16 26 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 28 H 0.05 1.05 7.84 -51.93 -0.41 0.64 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.52 6.60 -51.93 -0.34 1.18 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.94 6.94 -51.93 -0.36 1.58 16 36 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -29.57 298.91 -5.50 -35.07 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.10 Total: -0.34 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.96 Total: -1.73 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 1.03 Total: -49.43 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.06 Total: -4.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.57 -5.50 -35.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156648661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.851 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds