Wall clock time and date at job start Sun Mar 29 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.89804 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46922 * 125.00460 * 5 4 3 7 7 O 1.21284 * 119.99683 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00126 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47117 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46787 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47102 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99767 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00343 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00215 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46981 * 89.99859 * 16 14 12 18 18 H 1.48495 * 109.46990 * 209.99498 * 16 14 12 19 19 H 1.48497 * 109.47143 * 329.99711 * 16 14 12 20 20 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 21 21 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 22 22 H 0.96999 * 126.03519 * 0.04296 * 21 2 1 23 23 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 24 24 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 25 25 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 26 26 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 27 27 H 1.08999 * 109.46968 * 244.99744 * 5 4 3 28 28 H 1.08991 * 109.47337 * 5.00386 * 5 4 3 29 29 H 0.97000 * 119.99831 * 0.02562 * 8 6 5 30 30 H 1.09005 * 109.47037 * 299.99654 * 9 8 6 31 31 H 1.08993 * 109.47115 * 59.99596 * 9 8 6 32 32 H 1.08994 * 109.47069 * 299.99741 * 10 9 8 33 33 H 1.09001 * 109.47104 * 59.99846 * 10 9 8 34 34 H 1.09005 * 109.47281 * 299.99300 * 11 10 9 35 35 H 1.09001 * 109.47345 * 60.00091 * 11 10 9 36 36 H 0.96997 * 120.00026 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0013 6 6 5.7385 1.1736 1.1656 7 8 5.4094 0.2833 1.9206 8 7 6.8948 1.8357 1.3677 9 6 7.7547 1.4796 2.4992 10 6 8.9940 2.3768 2.5000 11 6 9.8917 2.0053 3.6821 12 6 11.1127 2.8885 3.6826 13 1 11.2359 3.6400 2.9168 14 6 12.0720 2.7380 4.6614 15 7 13.1378 3.5085 4.6616 16 14 11.8585 1.4388 5.9865 17 1 12.4750 0.1654 5.5350 18 1 12.5196 1.8930 7.2362 19 1 10.4113 1.2250 6.2416 20 7 3.6334 -0.6524 0.0004 21 7 2.3027 -1.0899 0.0060 22 1 2.0056 -2.0133 0.0104 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.9740 2.1211 -0.0009 27 1 5.4037 1.4009 -0.9298 28 1 4.5484 2.5818 0.0910 29 1 7.1578 2.5480 0.7641 30 1 7.2056 1.6183 3.4306 31 1 8.0602 0.4373 2.4093 32 1 9.5432 2.2386 1.5688 33 1 8.6880 3.4191 2.5902 34 1 9.3422 2.1439 4.6132 35 1 10.1977 0.9630 3.5924 36 1 13.8129 3.4023 5.3500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176275751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:56 Heat of formation + Delta-G solvation = 14.411196 kcal Electronic energy + Delta-G solvation = -17193.456492 eV Core-core repulsion = 14292.519577 eV Total energy + Delta-G solvation = -2900.936915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.42261 -39.30395 -35.48550 -33.50773 -33.25331 -31.87246 -31.35623 -29.03220 -27.22361 -26.77093 -22.98438 -21.12530 -20.69626 -20.38972 -19.34675 -17.57488 -16.94761 -16.57677 -15.55032 -15.53251 -15.04211 -14.35458 -14.16269 -13.99458 -13.65870 -13.41238 -13.20656 -12.92494 -12.68657 -12.55227 -12.20301 -11.91103 -11.75984 -11.04071 -10.86480 -10.66828 -10.15156 -9.92863 -9.75241 -9.61326 -9.32882 -9.20006 -8.77675 -8.74344 -8.53622 -6.04588 -4.03071 1.72623 2.54557 2.69733 2.84524 3.33115 3.40425 3.45356 3.49713 4.33965 4.46102 4.46367 4.74443 5.00396 5.02844 5.07760 5.25947 5.29667 5.42539 5.50755 5.56646 5.63443 5.71529 5.93330 6.06939 6.40884 6.46403 6.49347 6.75840 6.84276 7.12864 7.25985 7.39353 7.58399 7.71162 7.79758 8.44118 8.52584 8.99404 9.57910 11.08651 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058410 B = 0.003059 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.251094 B = 9151.600578 C = 9417.420271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.266 4.266 4 C 0.090 3.910 5 C -0.062 4.062 6 C 0.510 3.490 7 O -0.530 6.530 8 N -0.728 5.728 9 C 0.115 3.885 10 C -0.113 4.113 11 C -0.012 4.012 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 N -0.260 5.260 21 N -0.476 5.476 22 H 0.436 0.564 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.400 0.600 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.985 -4.549 -12.105 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.295 4.295 4 C -0.078 4.078 5 C -0.104 4.104 6 C 0.294 3.706 7 O -0.405 6.405 8 N -0.380 5.380 9 C -0.007 4.007 10 C -0.151 4.151 11 C -0.050 4.050 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 N -0.083 5.083 21 N -0.185 5.185 22 H 0.279 0.721 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.165 0.835 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.233 0.767 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.333 -6.198 -11.439 27.593 hybrid contribution -0.425 -0.030 0.496 0.654 sum -24.758 -6.228 -10.943 27.776 Atomic orbital electron populations 1.20442 0.87344 1.03945 1.03267 1.21080 0.94540 0.87842 1.01461 1.21089 0.91381 0.99174 1.17848 1.21528 0.94508 0.91593 1.00133 1.20061 0.92017 0.99250 0.99035 1.20333 0.81671 0.82291 0.86297 1.90737 1.72648 1.30221 1.46930 1.46119 1.21745 1.38648 1.31485 1.21619 0.91278 0.99831 0.88019 1.21698 0.93845 0.98330 1.01197 1.19510 0.95178 0.96916 0.93374 1.21104 1.02990 1.18785 1.13031 0.90987 1.25029 0.94970 0.95845 0.97666 1.69913 1.10098 1.39359 1.34882 0.86775 0.78918 0.82125 0.81491 1.20256 1.21390 1.18894 1.77435 0.95491 1.12502 1.22840 1.46340 1.04216 1.08167 1.59799 0.72072 0.90217 0.89577 0.91167 0.83529 0.87234 0.86921 0.76661 0.91941 0.91911 0.92108 0.92084 0.96334 0.96768 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.43 36.01 0.38 -0.07 16 2 C 0.08 0.73 7.21 -82.27 -0.59 0.14 16 3 C -0.27 -2.78 10.64 -40.01 -0.43 -3.20 16 4 C 0.09 1.15 6.02 -82.40 -0.50 0.66 16 5 C -0.06 -0.65 6.28 -29.03 -0.18 -0.83 16 6 C 0.51 7.54 7.82 -10.99 -0.09 7.45 16 7 O -0.53 -10.36 15.56 5.55 0.09 -10.27 16 8 N -0.73 -10.03 5.56 -60.29 -0.33 -10.37 16 9 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 12 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 16 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 N -0.26 -3.78 12.05 33.67 0.41 -3.37 16 21 N -0.48 -5.09 7.36 33.48 0.25 -4.84 16 22 H 0.44 3.26 8.96 -182.61 -1.64 1.63 16 23 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 27 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.11 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.40 4.20 8.47 -40.82 -0.35 3.86 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -36.98 311.02 -7.48 -44.46 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.56 Total: -0.60 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.11 Total: -9.86 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 1.09 Total: -45.75 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.98 -7.48 -44.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176275751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.870 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds