Wall clock time and date at job start Sun Mar 29 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.89804 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46922 * 125.00460 * 5 4 3 7 7 O 1.21284 * 119.99683 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00126 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47117 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46787 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47102 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99767 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00343 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00215 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46981 * 89.99859 * 16 14 12 18 18 H 1.48495 * 109.46990 * 209.99498 * 16 14 12 19 19 H 1.48497 * 109.47143 * 329.99711 * 16 14 12 20 20 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 21 21 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 22 22 H 0.96999 * 126.03519 * 0.04296 * 21 2 1 23 23 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 24 24 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 25 25 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 26 26 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 27 27 H 1.08999 * 109.46968 * 244.99744 * 5 4 3 28 28 H 1.08991 * 109.47337 * 5.00386 * 5 4 3 29 29 H 0.97000 * 119.99831 * 0.02562 * 8 6 5 30 30 H 1.09005 * 109.47037 * 299.99654 * 9 8 6 31 31 H 1.08993 * 109.47115 * 59.99596 * 9 8 6 32 32 H 1.08994 * 109.47069 * 299.99741 * 10 9 8 33 33 H 1.09001 * 109.47104 * 59.99846 * 10 9 8 34 34 H 1.09005 * 109.47281 * 299.99300 * 11 10 9 35 35 H 1.09001 * 109.47345 * 60.00091 * 11 10 9 36 36 H 0.96997 * 120.00026 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0013 6 6 5.7385 1.1736 1.1656 7 8 5.4094 0.2833 1.9206 8 7 6.8948 1.8357 1.3677 9 6 7.7547 1.4796 2.4992 10 6 8.9940 2.3768 2.5000 11 6 9.8917 2.0053 3.6821 12 6 11.1127 2.8885 3.6826 13 1 11.2359 3.6400 2.9168 14 6 12.0720 2.7380 4.6614 15 7 13.1378 3.5085 4.6616 16 14 11.8585 1.4388 5.9865 17 1 12.4750 0.1654 5.5350 18 1 12.5196 1.8930 7.2362 19 1 10.4113 1.2250 6.2416 20 7 3.6334 -0.6524 0.0004 21 7 2.3027 -1.0899 0.0060 22 1 2.0056 -2.0133 0.0104 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.9740 2.1211 -0.0009 27 1 5.4037 1.4009 -0.9298 28 1 4.5484 2.5818 0.0910 29 1 7.1578 2.5480 0.7641 30 1 7.2056 1.6183 3.4306 31 1 8.0602 0.4373 2.4093 32 1 9.5432 2.2386 1.5688 33 1 8.6880 3.4191 2.5902 34 1 9.3422 2.1439 4.6132 35 1 10.1977 0.9630 3.5924 36 1 13.8129 3.4023 5.3500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176275751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:55 Heat of formation + Delta-G solvation = -13.605804 kcal Electronic energy + Delta-G solvation = -17194.671400 eV Core-core repulsion = 14292.519577 eV Total energy + Delta-G solvation = -2902.151823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -42.20295 -40.48963 -36.98045 -35.11874 -34.31774 -33.28931 -32.42540 -30.13541 -28.40401 -27.79367 -24.68627 -22.25028 -22.06808 -21.39514 -20.41229 -18.95258 -18.33711 -17.78370 -16.88096 -16.75807 -16.17556 -15.88985 -15.52973 -14.82269 -14.72040 -14.55907 -14.35548 -13.97488 -13.75102 -13.66677 -13.48718 -13.06935 -12.79746 -12.71338 -12.65845 -11.91151 -11.77411 -11.58482 -11.48283 -11.32505 -10.87261 -10.76172 -10.24446 -10.02804 -9.49357 -8.29394 -6.32874 0.97470 1.36237 1.37734 1.49686 1.70843 1.73814 2.01460 2.36056 2.41679 3.06261 3.60863 3.80546 4.06003 4.19024 4.20658 4.23254 4.46860 4.52228 4.55098 4.76871 4.79838 4.88245 4.90296 4.95231 5.05372 5.12723 5.28958 5.42776 5.54121 5.56763 5.65521 5.71592 6.27910 6.49047 6.65309 6.75312 6.79232 7.31845 7.34948 8.86935 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058410 B = 0.003059 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.251094 B = 9151.600578 C = 9417.420271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.085 3.915 3 C -0.285 4.285 4 C 0.072 3.928 5 C -0.054 4.054 6 C 0.508 3.492 7 O -0.582 6.582 8 N -0.716 5.716 9 C 0.128 3.872 10 C -0.099 4.099 11 C -0.014 4.014 12 C -0.529 4.529 13 H 0.040 0.960 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.250 1.250 20 N -0.319 5.319 21 N -0.479 5.479 22 H 0.445 0.555 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.151 0.849 29 H 0.418 0.582 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.278 -4.698 -12.567 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.314 4.314 4 C -0.095 4.095 5 C -0.095 4.095 6 C 0.294 3.706 7 O -0.461 6.461 8 N -0.369 5.369 9 C 0.004 3.996 10 C -0.137 4.137 11 C -0.052 4.052 12 C -0.567 4.567 13 H 0.058 0.942 14 C -0.192 4.192 15 N -0.590 5.590 16 Si 0.770 3.230 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.173 1.173 20 N -0.142 5.142 21 N -0.189 5.189 22 H 0.290 0.710 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.188 0.812 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.255 0.745 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.634 -6.325 -11.942 29.866 hybrid contribution 0.253 0.061 0.571 0.627 sum -26.380 -6.265 -11.372 29.402 Atomic orbital electron populations 1.20595 0.84140 1.05160 1.04756 1.21799 0.96406 0.87018 0.99128 1.21483 0.90656 1.00756 1.18492 1.21999 0.96136 0.91502 0.99872 1.20182 0.90790 1.00808 0.97704 1.21088 0.81645 0.81144 0.86678 1.90716 1.73808 1.32531 1.49073 1.45929 1.21187 1.39018 1.30799 1.21236 0.90801 0.98608 0.88978 1.21472 0.93813 0.99019 0.99361 1.19481 0.94162 0.95972 0.95539 1.21464 1.04729 1.18551 1.11958 0.94186 1.25965 0.94653 0.98226 1.00364 1.70053 1.11280 1.41490 1.36200 0.85715 0.79679 0.79248 0.78371 1.19369 1.20908 1.17347 1.77332 0.97766 1.13881 1.25259 1.46399 1.03565 1.09223 1.59683 0.71018 0.88434 0.88337 0.89958 0.81183 0.84911 0.83157 0.74508 0.92868 0.93134 0.91585 0.91364 0.96228 0.96505 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.43 71.24 0.74 0.14 16 2 C 0.09 1.42 7.21 41.40 0.30 1.72 16 3 C -0.29 -5.39 10.64 21.99 0.23 -5.16 16 4 C 0.07 1.75 6.02 43.10 0.26 2.01 16 5 C -0.05 -1.01 6.28 29.10 0.18 -0.82 16 6 C 0.51 14.37 7.82 87.66 0.69 15.05 16 7 O -0.58 -22.77 15.56 -3.04 -0.05 -22.81 16 8 N -0.72 -18.47 5.56 -463.06 -2.57 -21.04 16 9 C 0.13 4.22 5.67 86.38 0.49 4.71 16 10 C -0.10 -3.60 5.27 30.60 0.16 -3.44 16 11 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 12 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 13 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 14 C 0.00 0.28 5.47 84.65 0.46 0.75 16 15 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 16 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 20 N -0.32 -9.22 12.05 -47.38 -0.57 -9.80 16 21 N -0.48 -9.92 7.36 -48.00 -0.35 -10.27 16 22 H 0.44 6.51 8.96 -213.33 -1.91 4.60 16 23 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 27 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.15 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.42 7.70 8.47 -92.71 -0.79 6.91 16 30 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.02 0.90 7.20 -2.38 -0.02 0.89 16 35 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 36 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -81.99 311.02 0.86 -81.12 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -1.66 Total: 10.77 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.89 Total: -15.59 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.20 Total: -100.47 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -81.99 0.86 -81.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176275751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.517 kcal (2) G-P(sol) polarization free energy of solvation -81.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds