Wall clock time and date at job start Mon Mar 30 2020 00:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47376 * 2 1 4 4 C 1.52998 * 109.47032 * 239.99415 * 2 1 3 5 5 C 1.53009 * 109.46823 * 119.99831 * 2 1 3 6 6 C 1.50703 * 109.47091 * 59.99594 * 5 2 1 7 7 C 1.39463 * 125.72780 * 125.00124 * 6 5 2 8 8 C 1.36668 * 107.84134 * 179.97438 * 7 6 5 9 9 N 1.38595 * 126.31546 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99863 * 359.72712 * 9 8 7 11 11 O 1.21815 * 120.00380 * 359.97438 * 10 9 8 12 12 C 1.41535 * 119.99869 * 179.97438 * 10 9 8 13 13 H 1.07990 * 119.99985 * 359.97438 * 12 10 9 14 14 C 1.40167 * 119.99707 * 179.97438 * 12 10 9 15 15 N 1.30618 * 120.00252 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99583 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47213 * 90.00373 * 16 14 12 18 18 H 1.48504 * 109.47159 * 210.00032 * 16 14 12 19 19 H 1.48497 * 109.47216 * 330.00478 * 16 14 12 20 20 N 1.36055 * 107.36913 * 0.22732 * 8 7 6 21 21 H 0.96997 * 126.12081 * 179.77320 * 20 8 7 22 22 N 1.30987 * 125.73078 * 304.95902 * 6 5 2 23 23 H 1.08998 * 109.47384 * 300.00861 * 1 2 3 24 24 H 1.09005 * 109.46873 * 60.00545 * 1 2 3 25 25 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47399 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.46675 * 299.99577 * 3 2 1 28 28 H 1.08998 * 109.47567 * 59.99251 * 3 2 1 29 29 H 1.08997 * 109.47311 * 300.00088 * 4 2 1 30 30 H 1.08997 * 109.46929 * 60.00252 * 4 2 1 31 31 H 1.09001 * 109.47075 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.46576 * 299.99803 * 5 2 1 33 33 H 1.08999 * 109.46989 * 180.02562 * 5 2 1 34 34 H 1.08000 * 126.07946 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00221 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99495 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7213 1.2494 6 6 1.5375 -2.1421 1.2494 7 6 2.3293 -3.2859 1.3482 8 6 1.5014 -4.3727 1.3122 9 7 1.8880 -5.7017 1.3827 10 6 3.1932 -6.0189 1.4931 11 8 4.0332 -5.1374 1.5305 12 6 3.5880 -7.3761 1.5656 13 1 2.8433 -8.1575 1.5328 14 6 4.9455 -7.7059 1.6799 15 7 5.8461 -6.7608 1.7200 16 14 5.4664 -9.4972 1.7763 17 1 5.7114 -10.0159 0.4065 18 1 6.7118 -9.6082 2.5775 19 1 4.3903 -10.2917 2.4213 20 7 0.2281 -3.9093 1.1888 21 1 -0.5747 -4.4510 1.1344 22 7 0.2838 -2.5100 1.1575 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6767 -0.2076 -2.1391 31 1 3.1300 -0.7218 -1.2489 32 1 1.6766 -0.2073 2.1392 33 1 3.1300 -0.7209 1.2496 34 1 3.4054 -3.3088 1.4373 35 1 1.2195 -6.4037 1.3489 36 1 6.7855 -6.9891 1.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187152358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:55 Heat of formation + Delta-G solvation = 19.559133 kcal Electronic energy + Delta-G solvation = -18437.529380 eV Core-core repulsion = 15536.815697 eV Total energy + Delta-G solvation = -2900.713683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54946 -37.83761 -36.96570 -33.54359 -32.52557 -30.93564 -28.55368 -27.06319 -26.95076 -26.76445 -26.22810 -21.63908 -20.15856 -19.29484 -18.34636 -17.61676 -16.72930 -15.57870 -14.89686 -14.69157 -14.15348 -14.05429 -13.83159 -13.73772 -12.69439 -12.56531 -12.48232 -12.33548 -12.13874 -11.58512 -11.50909 -11.41271 -11.28439 -11.18724 -10.74348 -10.68378 -10.53598 -10.40942 -10.35856 -9.64961 -9.51782 -8.98814 -8.29187 -7.76709 -6.96091 -6.45770 -4.99802 2.66107 3.01569 3.07739 3.11419 3.31047 3.66095 3.94520 4.38568 4.60344 5.03391 5.10126 5.10797 5.52173 5.64733 5.70640 5.77729 5.82399 5.96213 6.04012 6.09180 6.10981 6.28179 6.34402 6.44166 6.48284 6.57216 6.68119 6.77623 7.09092 7.14136 7.28176 7.71312 7.80835 7.96290 8.20989 8.53568 8.71680 9.17753 10.29364 10.48546 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041605 B = 0.004798 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.841125 B = 5834.468155 C = 6256.674140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.028 4.028 6 C 0.094 3.906 7 C -0.300 4.300 8 C 0.346 3.654 9 N -0.674 5.674 10 C 0.548 3.452 11 O -0.550 6.550 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.744 5.744 16 Si 0.915 3.085 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.263 1.263 20 N -0.517 5.517 21 H 0.425 0.575 22 N -0.320 5.320 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.390 0.610 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 7.025 -2.402 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.067 4.067 6 C -0.071 4.071 7 C -0.332 4.332 8 C 0.122 3.878 9 N -0.320 5.320 10 C 0.356 3.644 11 O -0.431 6.431 12 C -0.571 4.571 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.371 5.371 16 Si 0.739 3.261 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.187 1.187 20 N -0.232 5.232 21 H 0.267 0.733 22 N -0.146 5.146 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.189 0.811 35 H 0.222 0.778 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.478 8.032 -2.443 11.243 hybrid contribution 0.170 -2.014 0.081 2.022 sum -7.308 6.019 -2.362 9.757 Atomic orbital electron populations 1.22110 0.94273 1.04260 1.00032 1.20461 0.96255 0.94518 0.95067 1.21868 1.00937 0.95583 1.01322 1.21832 1.00913 1.00580 0.96166 1.20101 1.00528 0.88506 0.97559 1.21897 0.90987 0.96053 0.98153 1.21625 1.01849 0.88084 1.21687 1.18684 0.85069 0.87582 0.96455 1.43853 1.11128 1.01514 1.75548 1.16992 0.78086 0.90856 0.78439 1.90596 1.48604 1.49491 1.54408 1.19907 0.93203 0.91168 1.52821 0.91066 1.25749 0.96174 0.99171 0.92438 1.69989 1.01856 1.33680 1.31585 0.86236 0.78755 0.82060 0.79021 1.19443 1.20129 1.18691 1.46444 1.05583 1.05754 1.65437 0.73310 1.77074 1.19427 0.87059 1.31041 0.93446 0.94047 0.89358 0.92659 0.92945 0.92857 0.92369 0.93474 0.92678 0.90911 0.90152 0.81142 0.77753 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.07 37.16 0.30 -1.73 16 2 C -0.06 -0.85 0.80 -154.51 -0.12 -0.97 16 3 C -0.14 -1.56 8.47 37.15 0.31 -1.24 16 4 C -0.14 -1.99 8.23 37.16 0.31 -1.68 16 5 C -0.03 -0.43 4.86 -27.88 -0.14 -0.56 16 6 C 0.09 1.79 5.13 -82.49 -0.42 1.37 16 7 C -0.30 -6.78 9.56 -39.69 -0.38 -7.16 16 8 C 0.35 7.39 8.10 -153.10 -1.24 6.15 16 9 N -0.67 -14.79 5.38 -13.99 -0.08 -14.86 16 10 C 0.55 14.78 7.52 -15.00 -0.11 14.67 16 11 O -0.55 -16.67 11.98 5.09 0.06 -16.61 16 12 C -0.54 -14.06 9.30 -37.60 -0.35 -14.41 16 13 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 14 C 0.09 2.29 5.50 -17.34 -0.10 2.20 16 15 N -0.74 -20.80 11.73 55.56 0.65 -20.15 16 16 Si 0.92 18.71 29.56 -169.99 -5.02 13.69 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 N -0.52 -9.23 7.42 31.22 0.23 -8.99 16 21 H 0.42 5.97 8.96 -182.62 -1.64 4.33 16 22 N -0.32 -5.90 9.77 33.62 0.33 -5.58 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.38 5.30 -51.93 -0.28 1.11 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.98 7.22 -51.93 -0.37 0.61 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 34 H 0.17 4.40 5.82 -52.49 -0.31 4.10 16 35 H 0.39 7.08 8.78 -40.82 -0.36 6.73 16 36 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -31.40 298.15 -7.57 -38.98 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.30 Total: 12.41 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.94 Total: -3.38 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 1.14 Total: -49.58 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.06 Total: -16.61 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.40 -7.57 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187152358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.536 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds