Wall clock time and date at job start Mon Mar 30 2020 00:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47376 * 2 1 4 4 C 1.52998 * 109.47032 * 239.99415 * 2 1 3 5 5 C 1.53009 * 109.46823 * 119.99831 * 2 1 3 6 6 C 1.50703 * 109.47091 * 59.99594 * 5 2 1 7 7 C 1.39463 * 125.72780 * 125.00124 * 6 5 2 8 8 C 1.36668 * 107.84134 * 179.97438 * 7 6 5 9 9 N 1.38595 * 126.31546 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99863 * 359.72712 * 9 8 7 11 11 O 1.21815 * 120.00380 * 359.97438 * 10 9 8 12 12 C 1.41535 * 119.99869 * 179.97438 * 10 9 8 13 13 H 1.07990 * 119.99985 * 359.97438 * 12 10 9 14 14 C 1.40167 * 119.99707 * 179.97438 * 12 10 9 15 15 N 1.30618 * 120.00252 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99583 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47213 * 90.00373 * 16 14 12 18 18 H 1.48504 * 109.47159 * 210.00032 * 16 14 12 19 19 H 1.48497 * 109.47216 * 330.00478 * 16 14 12 20 20 N 1.36055 * 107.36913 * 0.22732 * 8 7 6 21 21 H 0.96997 * 126.12081 * 179.77320 * 20 8 7 22 22 N 1.30987 * 125.73078 * 304.95902 * 6 5 2 23 23 H 1.08998 * 109.47384 * 300.00861 * 1 2 3 24 24 H 1.09005 * 109.46873 * 60.00545 * 1 2 3 25 25 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47399 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.46675 * 299.99577 * 3 2 1 28 28 H 1.08998 * 109.47567 * 59.99251 * 3 2 1 29 29 H 1.08997 * 109.47311 * 300.00088 * 4 2 1 30 30 H 1.08997 * 109.46929 * 60.00252 * 4 2 1 31 31 H 1.09001 * 109.47075 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.46576 * 299.99803 * 5 2 1 33 33 H 1.08999 * 109.46989 * 180.02562 * 5 2 1 34 34 H 1.08000 * 126.07946 * 359.97438 * 7 6 5 35 35 H 0.96996 * 120.00221 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99495 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7213 1.2494 6 6 1.5375 -2.1421 1.2494 7 6 2.3293 -3.2859 1.3482 8 6 1.5014 -4.3727 1.3122 9 7 1.8880 -5.7017 1.3827 10 6 3.1932 -6.0189 1.4931 11 8 4.0332 -5.1374 1.5305 12 6 3.5880 -7.3761 1.5656 13 1 2.8433 -8.1575 1.5328 14 6 4.9455 -7.7059 1.6799 15 7 5.8461 -6.7608 1.7200 16 14 5.4664 -9.4972 1.7763 17 1 5.7114 -10.0159 0.4065 18 1 6.7118 -9.6082 2.5775 19 1 4.3903 -10.2917 2.4213 20 7 0.2281 -3.9093 1.1888 21 1 -0.5747 -4.4510 1.1344 22 7 0.2838 -2.5100 1.1575 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6767 -0.2076 -2.1391 31 1 3.1300 -0.7218 -1.2489 32 1 1.6766 -0.2073 2.1392 33 1 3.1300 -0.7209 1.2496 34 1 3.4054 -3.3088 1.4373 35 1 1.2195 -6.4037 1.3489 36 1 6.7855 -6.9891 1.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187152358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:54 Heat of formation + Delta-G solvation = -1.155018 kcal Electronic energy + Delta-G solvation = -18438.427613 eV Core-core repulsion = 15536.815697 eV Total energy + Delta-G solvation = -2901.611916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16442 -39.65747 -38.28064 -35.41056 -34.53525 -32.46089 -30.32233 -28.45408 -28.21914 -28.01672 -27.69441 -23.51160 -21.66426 -21.05721 -19.85739 -19.08487 -18.56235 -17.51211 -16.33159 -16.23793 -15.79415 -15.37782 -15.18963 -15.11378 -14.51004 -14.32433 -14.16523 -13.60493 -13.33187 -13.21086 -12.83028 -12.74080 -12.66623 -12.64520 -12.42438 -12.06134 -11.91671 -11.72070 -11.46030 -11.32544 -10.99391 -10.91807 -9.86171 -9.84832 -8.73872 -8.41745 -7.05884 1.01787 1.41056 1.42848 1.57799 1.73717 1.97561 2.23850 2.45390 3.00586 3.61323 3.77059 3.90795 4.01679 4.22431 4.43155 4.67520 4.77015 4.83674 4.91798 4.98047 5.01345 5.04014 5.16090 5.18755 5.19640 5.25688 5.39169 5.43808 5.54645 5.57946 5.72567 5.81065 6.06912 6.13532 6.56617 6.70791 6.95499 7.33114 8.32475 8.52018 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041605 B = 0.004798 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.841125 B = 5834.468155 C = 6256.674140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.031 4.031 6 C 0.101 3.899 7 C -0.332 4.332 8 C 0.334 3.666 9 N -0.664 5.664 10 C 0.531 3.469 11 O -0.595 6.595 12 C -0.558 4.558 13 H 0.096 0.904 14 C 0.033 3.967 15 N -0.797 5.797 16 Si 1.004 2.996 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.247 1.247 20 N -0.498 5.498 21 H 0.444 0.556 22 N -0.306 5.306 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 6.804 -2.592 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.193 4.193 5 C -0.070 4.070 6 C -0.065 4.065 7 C -0.365 4.365 8 C 0.109 3.891 9 N -0.312 5.312 10 C 0.340 3.660 11 O -0.480 6.480 12 C -0.593 4.593 13 H 0.114 0.886 14 C -0.186 4.186 15 N -0.425 5.425 16 Si 0.822 3.178 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.170 1.170 20 N -0.215 5.215 21 H 0.290 0.710 22 N -0.131 5.131 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.244 0.756 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.929 7.803 -2.641 12.149 hybrid contribution 0.534 -1.869 0.119 1.947 sum -8.396 5.934 -2.522 10.586 Atomic orbital electron populations 1.22051 0.93910 1.03073 1.01275 1.20459 0.96458 0.95762 0.93239 1.21819 1.01120 0.93595 1.02658 1.21815 1.00588 0.99096 0.97779 1.20283 1.00421 0.86799 0.99524 1.22241 0.90343 0.96826 0.97097 1.21444 1.00715 0.90441 1.23888 1.18589 0.86384 0.87062 0.97018 1.43320 1.10317 1.02433 1.75119 1.17399 0.79150 0.91152 0.78263 1.90586 1.50468 1.50641 1.56287 1.20460 0.94531 0.91498 1.52816 0.88631 1.27018 0.95819 1.04713 0.91012 1.70141 1.02641 1.36954 1.32744 0.84922 0.78575 0.74864 0.79420 1.18510 1.19662 1.17002 1.46360 1.05080 1.05722 1.64298 0.71031 1.77107 1.18909 0.87065 1.30027 0.92595 0.92435 0.91595 0.92454 0.91528 0.91619 0.95489 0.91501 0.93201 0.89214 0.90575 0.84945 0.75566 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.07 71.98 0.58 -3.05 16 2 C -0.06 -1.50 0.80 -52.18 -0.04 -1.54 16 3 C -0.13 -2.64 8.47 71.98 0.61 -2.03 16 4 C -0.14 -3.84 8.23 71.98 0.59 -3.25 16 5 C -0.03 -0.95 4.86 29.85 0.15 -0.80 16 6 C 0.10 3.87 5.13 42.98 0.22 4.09 16 7 C -0.33 -15.68 9.56 22.20 0.21 -15.47 16 8 C 0.33 14.54 8.10 131.49 1.07 15.60 16 9 N -0.66 -29.65 5.38 -316.34 -1.70 -31.35 16 10 C 0.53 29.61 7.52 85.05 0.64 30.25 16 11 O -0.59 -38.07 11.98 -4.72 -0.06 -38.13 16 12 C -0.56 -29.51 9.30 23.55 0.22 -29.30 16 13 H 0.10 4.40 7.85 -2.92 -0.02 4.38 16 14 C 0.03 1.74 5.50 85.34 0.47 2.21 16 15 N -0.80 -45.94 11.73 21.86 0.26 -45.68 16 16 Si 1.00 37.89 29.56 68.60 2.03 39.92 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 20 N -0.50 -17.41 7.42 -55.13 -0.41 -17.82 16 21 H 0.44 11.77 8.96 -213.34 -1.91 9.86 16 22 N -0.31 -11.05 9.77 -47.56 -0.46 -11.51 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.95 5.30 -2.39 -0.01 1.94 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.91 7.22 -2.39 -0.02 0.89 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 34 H 0.13 7.38 5.82 -2.91 -0.02 7.37 16 35 H 0.41 14.69 8.78 -92.71 -0.81 13.87 16 36 H 0.28 14.58 8.29 -92.71 -0.77 13.81 16 Total: -1.00 -70.80 298.15 2.75 -68.05 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -1.62 Total: 39.82 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.71 Total: -3.29 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -2.32 Total: -106.36 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.06 Total: -38.13 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -70.80 2.75 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187152358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.895 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds