Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39878 * 125.89666 * 2 1 4 4 C 1.35317 * 107.92124 * 180.14393 * 3 2 1 5 5 C 1.50698 * 126.12567 * 179.90772 * 4 3 2 6 6 C 1.50694 * 109.47166 * 84.68913 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47325 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00025 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00011 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00044 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99599 * 15 13 11 17 17 H 1.48501 * 109.47120 * 209.99938 * 15 13 11 18 18 H 1.48499 * 109.46888 * 329.99550 * 15 13 11 19 19 N 1.34946 * 107.74097 * 359.64238 * 4 3 2 20 20 C 1.46502 * 126.03290 * 180.20615 * 19 4 3 21 21 N 1.30838 * 125.90583 * 179.74204 * 2 1 3 22 22 H 1.09005 * 109.46889 * 270.23169 * 1 2 3 23 23 H 1.08994 * 109.47216 * 30.23387 * 1 2 3 24 24 H 1.08996 * 109.46808 * 150.23479 * 1 2 3 25 25 H 1.08002 * 126.03875 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.46890 * 324.68903 * 5 4 3 27 27 H 1.09002 * 109.46875 * 204.68706 * 5 4 3 28 28 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 29 29 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 30 30 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 31 31 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 32 32 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 33 33 H 0.97000 * 120.00268 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47595 * 89.99848 * 20 19 4 35 35 H 1.09002 * 109.47272 * 210.00230 * 20 19 4 36 36 H 1.09003 * 109.47060 * 329.99896 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6143 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 6 5.1684 2.0003 1.4074 7 8 4.4820 1.6078 2.3271 8 7 6.2294 2.7954 1.6499 9 6 6.5499 3.1902 3.0238 10 6 7.7901 4.0863 3.0207 11 6 8.1202 4.4920 4.4341 12 1 7.5066 4.1457 5.2526 13 6 9.2056 5.3052 4.6821 14 7 9.4935 5.6596 5.9154 15 14 10.2665 5.9047 3.2663 16 1 9.7316 7.1933 2.7579 17 1 11.6603 6.0998 3.7402 18 1 10.2511 4.8974 2.1753 19 7 3.6088 -0.6339 0.0028 20 6 4.7900 -1.5005 0.0063 21 7 2.2743 -1.0598 0.0048 22 1 -0.3633 0.0042 1.0277 23 1 -0.3633 0.8878 -0.5174 24 1 -0.3633 -0.8921 -0.5102 25 1 1.9922 2.1599 0.0004 26 1 4.6360 2.4914 -0.5999 27 1 5.6757 1.0557 -0.4377 28 1 6.7781 3.1096 0.9143 29 1 5.7086 3.7364 3.4506 30 1 6.7459 2.2999 3.6215 31 1 8.6315 3.5405 2.5938 32 1 7.5937 4.9764 2.4232 33 1 10.2568 6.2320 6.0900 34 1 5.0834 -1.7109 1.0348 35 1 4.5563 -2.4353 -0.5033 36 1 5.6092 -1.0002 -0.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = 26.173182 kcal Electronic energy + Delta-G solvation = -17670.528069 eV Core-core repulsion = 14770.101193 eV Total energy + Delta-G solvation = -2900.426877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36699 -39.22342 -35.08769 -34.15982 -32.89061 -32.23999 -30.27344 -29.60947 -27.70193 -25.46840 -24.70878 -21.09298 -20.77405 -20.19963 -19.22382 -17.09788 -16.89422 -16.65303 -15.43163 -15.40533 -15.09200 -14.28416 -14.18875 -13.82229 -13.61368 -13.45384 -13.35148 -13.01432 -12.64112 -12.47655 -12.32939 -12.12059 -11.89500 -11.53610 -11.23664 -10.56660 -10.44510 -10.33009 -10.01310 -9.67522 -9.36695 -9.05795 -8.69543 -8.60079 -8.46770 -6.14560 -4.15126 1.79005 2.44798 2.74975 2.81381 3.21909 3.29164 3.30556 3.58260 4.32939 4.33939 4.40915 4.77939 4.90814 4.99819 5.05228 5.18140 5.19034 5.23843 5.32502 5.52788 5.61865 5.79389 5.82193 6.04922 6.14187 6.16535 6.50319 6.66334 6.68471 6.96193 7.07888 7.17715 7.62306 7.72127 7.79917 8.38855 8.47696 8.89738 9.45187 10.98525 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.044390 B = 0.003684 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.621610 B = 7599.283880 C = 7769.726204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.070 3.930 3 C -0.256 4.256 4 C 0.110 3.890 5 C -0.083 4.083 6 C 0.507 3.493 7 O -0.533 6.533 8 N -0.725 5.725 9 C 0.130 3.870 10 C -0.021 4.021 11 C -0.524 4.524 12 H 0.075 0.925 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 N -0.368 5.368 20 C 0.100 3.900 21 N -0.298 5.298 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.397 0.603 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -9.702 -17.253 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C -0.285 4.285 4 C -0.018 4.018 5 C -0.125 4.125 6 C 0.291 3.709 7 O -0.409 6.409 8 N -0.376 5.376 9 C 0.008 3.992 10 C -0.059 4.059 11 C -0.563 4.563 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 N -0.150 5.150 20 C -0.042 4.042 21 N -0.121 5.121 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.230 0.770 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.446 -11.256 -16.436 22.493 hybrid contribution 1.128 1.472 -0.879 2.052 sum -9.318 -9.784 -17.315 21.963 Atomic orbital electron populations 1.20148 0.86787 1.02965 1.02962 1.22242 0.96838 0.90773 0.99675 1.21028 0.90832 0.99750 1.16888 1.20252 0.96008 0.84257 1.01309 1.20322 0.95197 1.00062 0.96896 1.20230 0.81092 0.79355 0.90251 1.90751 1.49891 1.54437 1.45845 1.46303 1.29579 1.50408 1.11333 1.21524 0.99003 0.98906 0.79751 1.19791 0.92585 0.94527 0.99005 1.20918 1.13146 1.30897 0.91320 0.90640 1.25007 0.97135 0.95560 0.95592 1.69900 1.28474 1.36062 1.19169 0.86741 0.79875 0.79500 0.82882 1.20188 1.21260 1.19104 1.48265 1.05485 1.04004 1.57211 1.21838 0.83905 0.94759 1.03673 1.77250 0.86121 1.22666 1.26087 0.90562 0.90511 0.91170 0.83741 0.86295 0.87981 0.77001 0.91898 0.91970 0.96020 0.96382 0.92504 0.90566 0.89313 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.01 0.38 -0.28 16 2 C 0.07 0.95 7.22 -82.40 -0.59 0.36 16 3 C -0.26 -3.46 10.65 -40.01 -0.43 -3.89 16 4 C 0.11 1.46 5.42 -82.27 -0.45 1.01 16 5 C -0.08 -0.88 5.99 -29.04 -0.17 -1.05 16 6 C 0.51 7.73 7.82 -10.98 -0.09 7.65 16 7 O -0.53 -10.72 16.03 5.56 0.09 -10.63 16 8 N -0.73 -11.01 5.56 -60.29 -0.33 -11.35 16 9 C 0.13 2.58 5.61 -4.04 -0.02 2.55 16 10 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 11 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 12 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 15 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 19 N -0.37 -4.97 4.01 -63.88 -0.26 -5.23 16 20 C 0.10 0.94 11.27 59.85 0.67 1.62 16 21 N -0.30 -4.46 12.57 33.67 0.42 -4.04 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.10 0.78 6.95 -51.93 -0.36 0.42 16 28 H 0.40 4.73 8.47 -40.82 -0.35 4.39 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 32 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.57 6.98 -51.93 -0.36 0.21 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -35.63 310.73 -5.76 -41.39 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.23 Total: 1.14 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.25 Total: -5.60 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.61 Total: -46.94 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.63 -5.76 -41.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.564 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds