Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39878 * 125.89666 * 2 1 4 4 C 1.35317 * 107.92124 * 180.14393 * 3 2 1 5 5 C 1.50698 * 126.12567 * 179.90772 * 4 3 2 6 6 C 1.50694 * 109.47166 * 84.68913 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47325 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00025 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00011 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00044 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99599 * 15 13 11 17 17 H 1.48501 * 109.47120 * 209.99938 * 15 13 11 18 18 H 1.48499 * 109.46888 * 329.99550 * 15 13 11 19 19 N 1.34946 * 107.74097 * 359.64238 * 4 3 2 20 20 C 1.46502 * 126.03290 * 180.20615 * 19 4 3 21 21 N 1.30838 * 125.90583 * 179.74204 * 2 1 3 22 22 H 1.09005 * 109.46889 * 270.23169 * 1 2 3 23 23 H 1.08994 * 109.47216 * 30.23387 * 1 2 3 24 24 H 1.08996 * 109.46808 * 150.23479 * 1 2 3 25 25 H 1.08002 * 126.03875 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.46890 * 324.68903 * 5 4 3 27 27 H 1.09002 * 109.46875 * 204.68706 * 5 4 3 28 28 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 29 29 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 30 30 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 31 31 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 32 32 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 33 33 H 0.97000 * 120.00268 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47595 * 89.99848 * 20 19 4 35 35 H 1.09002 * 109.47272 * 210.00230 * 20 19 4 36 36 H 1.09003 * 109.47060 * 329.99896 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6143 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 6 5.1684 2.0003 1.4074 7 8 4.4820 1.6078 2.3271 8 7 6.2294 2.7954 1.6499 9 6 6.5499 3.1902 3.0238 10 6 7.7901 4.0863 3.0207 11 6 8.1202 4.4920 4.4341 12 1 7.5066 4.1457 5.2526 13 6 9.2056 5.3052 4.6821 14 7 9.4935 5.6596 5.9154 15 14 10.2665 5.9047 3.2663 16 1 9.7316 7.1933 2.7579 17 1 11.6603 6.0998 3.7402 18 1 10.2511 4.8974 2.1753 19 7 3.6088 -0.6339 0.0028 20 6 4.7900 -1.5005 0.0063 21 7 2.2743 -1.0598 0.0048 22 1 -0.3633 0.0042 1.0277 23 1 -0.3633 0.8878 -0.5174 24 1 -0.3633 -0.8921 -0.5102 25 1 1.9922 2.1599 0.0004 26 1 4.6360 2.4914 -0.5999 27 1 5.6757 1.0557 -0.4377 28 1 6.7781 3.1096 0.9143 29 1 5.7086 3.7364 3.4506 30 1 6.7459 2.2999 3.6215 31 1 8.6315 3.5405 2.5938 32 1 7.5937 4.9764 2.4232 33 1 10.2568 6.2320 6.0900 34 1 5.0834 -1.7109 1.0348 35 1 4.5563 -2.4353 -0.5033 36 1 5.6092 -1.0002 -0.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = -0.639244 kcal Electronic energy + Delta-G solvation = -17671.690743 eV Core-core repulsion = 14770.101193 eV Total energy + Delta-G solvation = -2901.589551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31677 -40.50654 -36.66115 -35.05355 -34.79294 -33.30512 -31.93175 -30.41486 -28.83000 -26.54536 -26.19872 -22.76977 -22.07248 -21.22559 -20.20505 -19.00532 -18.15746 -17.65945 -16.70259 -16.53533 -16.29997 -16.17762 -15.35773 -14.90156 -14.82949 -14.55532 -14.44555 -14.36403 -13.83410 -13.34276 -13.30634 -13.16032 -13.00473 -12.89840 -12.71804 -12.18170 -12.14608 -11.74582 -11.51799 -11.51552 -11.00151 -10.78384 -10.05868 -10.04611 -9.42520 -8.29560 -6.37444 0.81165 1.40580 1.43612 1.54716 1.59829 1.64701 1.77871 2.37967 2.38873 3.05843 3.42667 3.63181 3.95418 4.03438 4.20837 4.33189 4.38270 4.42556 4.47143 4.52950 4.64827 4.73893 4.75805 4.82280 4.93804 5.06633 5.15877 5.27415 5.41932 5.44015 5.65078 5.78172 6.09804 6.22410 6.61726 6.71853 6.76124 7.27269 7.30397 8.87509 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.044390 B = 0.003684 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.621610 B = 7599.283880 C = 7769.726204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.056 3.944 3 C -0.279 4.279 4 C 0.099 3.901 5 C -0.069 4.069 6 C 0.508 3.492 7 O -0.588 6.588 8 N -0.711 5.711 9 C 0.145 3.855 10 C -0.012 4.012 11 C -0.542 4.542 12 H 0.025 0.975 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.962 3.038 16 H -0.265 1.265 17 H -0.289 1.289 18 H -0.232 1.232 19 N -0.376 5.376 20 C 0.089 3.911 21 N -0.335 5.335 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.142 0.858 28 H 0.418 0.582 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -9.335 -20.964 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.308 4.308 4 C -0.030 4.030 5 C -0.109 4.109 6 C 0.295 3.705 7 O -0.468 6.468 8 N -0.364 5.364 9 C 0.021 3.979 10 C -0.049 4.049 11 C -0.580 4.580 12 H 0.043 0.957 13 C -0.195 4.195 14 N -0.593 5.593 15 Si 0.784 3.216 16 H -0.190 1.190 17 H -0.215 1.215 18 H -0.154 1.154 19 N -0.158 5.158 20 C -0.051 4.051 21 N -0.159 5.159 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.095 0.905 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.160 0.840 28 H 0.256 0.744 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.488 -10.909 -20.199 24.840 hybrid contribution 0.762 1.312 0.391 1.567 sum -8.726 -9.597 -19.808 23.677 Atomic orbital electron populations 1.20269 0.84629 1.04370 1.03451 1.22868 0.98498 0.90593 0.98889 1.21396 0.91436 1.00439 1.17492 1.20708 0.96957 0.84591 1.00703 1.20389 0.95465 1.01517 0.93577 1.21026 0.79787 0.77917 0.91763 1.90744 1.51607 1.56316 1.48143 1.45982 1.30125 1.50386 1.09876 1.20991 0.97348 0.97328 0.82227 1.19647 0.93911 0.95741 0.95647 1.21293 1.12678 1.30919 0.93123 0.95691 1.26140 0.98841 0.95602 0.98951 1.70086 1.29561 1.37380 1.22302 0.85499 0.76900 0.79902 0.79319 1.18957 1.21517 1.15441 1.48614 1.05773 1.04673 1.56786 1.22145 0.83711 0.95510 1.03703 1.77179 0.87291 1.23886 1.27528 0.90409 0.88413 0.90475 0.82612 0.82633 0.84037 0.74443 0.94157 0.94179 0.94175 0.94324 0.92352 0.91604 0.88150 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.45 71.24 0.74 -0.49 16 2 C 0.06 1.49 7.22 43.10 0.31 1.81 16 3 C -0.28 -7.19 10.65 21.99 0.23 -6.95 16 4 C 0.10 2.42 5.42 41.40 0.22 2.64 16 5 C -0.07 -1.17 5.99 29.10 0.17 -1.00 16 6 C 0.51 14.35 7.82 87.65 0.69 15.03 16 7 O -0.59 -23.56 16.03 -3.04 -0.05 -23.61 16 8 N -0.71 -19.57 5.56 -463.05 -2.57 -22.14 16 9 C 0.15 5.67 5.61 86.38 0.48 6.15 16 10 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 11 C -0.54 -30.49 9.66 25.60 0.25 -30.25 16 12 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 13 C 0.00 0.08 5.47 84.65 0.46 0.55 16 14 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 15 Si 0.96 41.08 27.47 68.60 1.88 42.96 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 19 N -0.38 -9.65 4.01 -356.02 -1.43 -11.08 16 20 C 0.09 1.52 11.27 127.77 1.44 2.96 16 21 N -0.33 -9.90 12.57 -47.38 -0.60 -10.49 16 22 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 26 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.14 1.34 6.95 -2.39 -0.02 1.33 16 28 H 0.42 7.98 8.47 -92.71 -0.79 7.19 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.58 7.20 -2.38 -0.02 1.56 16 32 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.12 1.14 6.98 -2.39 -0.02 1.12 16 Total: -1.00 -81.96 310.73 2.91 -79.05 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.24 Total: 14.10 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.13 Total: -9.92 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -4.30 Total: -102.57 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.96 kcal Total: -81.96 2.91 -79.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.409 kcal (2) G-P(sol) polarization free energy of solvation -81.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds