Wall clock time and date at job start Sun Mar 29 2020 22:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39869 * 125.89994 * 2 1 4 4 C 1.35319 * 107.92199 * 179.86733 * 3 2 1 5 5 C 1.50698 * 126.12548 * 180.14715 * 4 3 2 6 6 C 1.50703 * 109.46901 * 85.29320 * 5 4 3 7 7 O 1.21280 * 120.00222 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99858 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99729 * 359.97438 * 8 6 5 10 10 C 1.46494 * 119.99912 * 179.97438 * 8 6 5 11 11 C 1.50695 * 109.47335 * 90.00039 * 10 8 6 12 12 H 1.08003 * 119.99824 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00276 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00095 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46763 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46939 * 119.99648 * 15 13 11 18 18 H 1.48491 * 109.46993 * 239.99562 * 15 13 11 19 19 N 1.34949 * 107.74072 * 0.38975 * 4 3 2 20 20 C 1.46499 * 126.03244 * 179.74834 * 19 4 3 21 21 N 1.30834 * 125.89652 * 180.31122 * 2 1 3 22 22 H 1.09002 * 109.47152 * 269.71476 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71576 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71557 * 1 2 3 25 25 H 1.08001 * 126.03471 * 359.97438 * 3 2 1 26 26 H 1.09001 * 109.46642 * 205.28642 * 5 4 3 27 27 H 1.08988 * 109.47246 * 325.28813 * 5 4 3 28 28 H 1.09004 * 109.47045 * 90.00168 * 9 8 6 29 29 H 1.08992 * 109.47111 * 210.00051 * 9 8 6 30 30 H 1.09002 * 109.47194 * 330.00155 * 9 8 6 31 31 H 1.09000 * 109.47207 * 209.99719 * 10 8 6 32 32 H 1.09001 * 109.47347 * 329.99882 * 10 8 6 33 33 H 0.97003 * 120.00358 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.47808 * 269.98164 * 20 19 4 35 35 H 1.09003 * 109.47286 * 29.98436 * 20 19 4 36 36 H 1.09002 * 109.46991 * 149.97561 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0030 5 6 4.8351 1.5989 0.0072 6 6 5.1698 1.9863 1.4246 7 8 4.4843 1.5849 2.3410 8 7 6.2311 2.7790 1.6738 9 6 7.0594 3.2634 0.5668 10 6 6.5561 3.1560 3.0515 11 6 7.4969 2.1378 3.6424 12 1 7.8200 1.2939 3.0509 13 6 7.9443 2.2829 4.9384 14 7 7.5506 3.3102 5.6589 15 14 9.1100 1.0203 5.6710 16 1 9.3981 -0.0311 4.6627 17 1 10.3763 1.6870 6.0673 18 1 8.4817 0.4011 6.8656 19 7 3.6087 -0.6341 -0.0039 20 6 4.7899 -1.5008 -0.0089 21 7 2.2741 -1.0598 -0.0058 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3633 0.8926 -0.5094 25 1 1.9923 2.1598 -0.0004 26 1 5.6753 1.0596 -0.4301 27 1 4.6357 2.4968 -0.5775 28 1 6.6650 4.2136 0.2067 29 1 8.0833 3.4029 0.9133 30 1 7.0461 2.5341 -0.2431 31 1 7.0320 4.1366 3.0572 32 1 5.6417 3.1925 3.6437 33 1 7.8650 3.4122 6.5708 34 1 5.0823 -1.7108 -1.0376 35 1 5.6097 -1.0007 0.5069 36 1 4.5567 -2.4357 0.5007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260202131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:31 Heat of formation + Delta-G solvation = 38.817542 kcal Electronic energy + Delta-G solvation = -18395.229159 eV Core-core repulsion = 15495.350583 eV Total energy + Delta-G solvation = -2899.878576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11585 -38.84503 -34.87516 -33.92416 -32.73630 -31.83470 -29.48538 -28.35316 -27.01466 -25.65256 -25.20372 -22.85645 -20.30699 -19.44712 -18.31882 -16.65878 -16.48133 -16.32413 -15.30982 -15.12230 -14.83032 -14.27089 -13.77932 -13.52049 -13.41943 -12.88195 -12.73833 -12.70258 -12.23998 -12.20244 -12.01004 -11.94843 -11.82021 -11.56291 -11.22408 -10.90659 -10.62195 -10.34082 -10.19968 -9.65686 -9.15571 -8.75229 -8.47506 -8.22758 -7.70159 -6.08062 -4.13143 2.04579 2.70058 2.98604 3.26580 3.31605 3.35290 3.38805 3.95466 4.41205 4.64079 4.67485 5.05264 5.15276 5.22808 5.24600 5.27937 5.38302 5.44687 5.54746 5.63847 5.68366 5.81051 5.87255 5.98546 6.03758 6.14892 6.40252 6.91077 6.98950 7.21779 7.40667 7.48243 7.87903 7.95391 8.18915 8.33947 8.85331 9.02651 9.52119 11.00102 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.005346 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.432891 B = 5236.681253 C = 5442.405733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.070 3.930 3 C -0.260 4.260 4 C 0.118 3.882 5 C -0.083 4.083 6 C 0.505 3.495 7 O -0.528 6.528 8 N -0.602 5.602 9 C 0.082 3.918 10 C 0.245 3.755 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.367 5.367 20 C 0.101 3.899 21 N -0.302 5.302 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.143 0.857 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 -3.060 -15.029 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 C -0.290 4.290 4 C -0.010 4.010 5 C -0.125 4.125 6 C 0.290 3.710 7 O -0.404 6.404 8 N -0.335 5.335 9 C -0.063 4.063 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.149 5.149 20 C -0.041 4.041 21 N -0.125 5.125 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.161 0.839 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.736 -4.549 -14.348 16.108 hybrid contribution 0.964 0.259 0.532 1.131 sum -4.772 -4.290 -13.817 15.234 Atomic orbital electron populations 1.20129 0.86965 1.02771 1.02858 1.22194 0.96709 0.90850 0.99850 1.20981 0.90875 0.99601 1.17502 1.20351 0.96162 0.84216 1.00307 1.20402 0.94623 0.99513 0.97940 1.20006 0.81504 0.79941 0.89576 1.90728 1.50236 1.53390 1.46058 1.48154 1.26915 1.48658 1.09766 1.21672 0.96783 0.98216 0.89594 1.19306 0.97087 0.95558 0.75438 1.21443 1.27521 1.09403 0.98212 0.92515 1.24938 0.96642 0.95741 0.96769 1.69937 1.44553 1.29088 1.09674 0.86449 0.80425 0.81350 0.79222 1.19867 1.20896 1.20852 1.48241 1.05365 1.04073 1.57210 1.21823 0.84333 0.95227 1.02712 1.77210 0.86238 1.22718 1.26341 0.90648 0.91299 0.90636 0.83902 0.88421 0.86905 0.93513 0.90616 0.92545 0.94875 0.93802 0.92713 0.90988 0.89448 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.45 36.01 0.38 -0.40 16 2 C 0.07 1.10 7.22 -82.41 -0.59 0.50 16 3 C -0.26 -4.21 10.65 -40.01 -0.43 -4.63 16 4 C 0.12 1.94 5.42 -82.26 -0.45 1.49 16 5 C -0.08 -1.20 4.36 -29.03 -0.13 -1.33 16 6 C 0.50 10.28 7.67 -10.98 -0.08 10.19 16 7 O -0.53 -13.50 15.61 5.56 0.09 -13.41 16 8 N -0.60 -12.35 2.86 -182.96 -0.52 -12.87 16 9 C 0.08 1.19 10.24 59.85 0.61 1.80 16 10 C 0.25 6.34 5.16 -5.20 -0.03 6.32 16 11 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 N -0.37 -6.06 4.01 -63.89 -0.26 -6.32 16 20 C 0.10 1.27 11.06 59.85 0.66 1.94 16 21 N -0.30 -5.26 12.58 33.67 0.42 -4.84 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 26 H 0.10 1.16 6.75 -51.93 -0.35 0.81 16 27 H 0.11 1.29 8.11 -51.94 -0.42 0.87 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 30 H 0.06 0.64 6.44 -51.93 -0.33 0.30 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.12 7.55 -51.93 -0.39 0.73 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -36.07 311.72 -5.56 -41.63 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.23 Total: -2.25 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.47 Total: 2.42 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.38 Total: -49.78 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.07 -5.56 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260202131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.448 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds