Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35462 * 116.99823 * 2 1 4 4 N 1.32322 * 119.15240 * 0.02562 * 3 2 1 5 5 C 1.32507 * 120.95120 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.36950 * 180.02562 * 5 4 3 7 7 C 1.38118 * 119.26600 * 0.02562 * 5 4 3 8 8 C 1.39622 * 118.45445 * 0.02562 * 7 5 4 9 9 N 1.38530 * 120.49770 * 179.97438 * 8 7 5 10 10 C 1.46506 * 120.00280 * 190.99846 * 9 8 7 11 11 C 1.46503 * 120.00242 * 10.99027 * 9 8 7 12 12 H 1.09005 * 109.46773 * 5.07007 * 11 9 8 13 13 C 1.52997 * 109.47560 * 245.07165 * 11 9 8 14 14 C 1.50698 * 109.46937 * 125.06729 * 11 9 8 15 15 H 1.08004 * 120.00290 * 0.02562 * 14 11 9 16 16 C 1.37881 * 120.00139 * 180.02562 * 14 11 9 17 17 N 1.31510 * 119.99593 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00247 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46930 * 90.00288 * 18 16 14 20 20 H 1.48501 * 109.47205 * 210.00186 * 18 16 14 21 21 H 1.48495 * 109.47079 * 330.00333 * 18 16 14 22 22 N 1.32257 * 119.15974 * 180.02562 * 3 2 1 23 23 H 1.09007 * 109.46932 * 299.99392 * 1 2 3 24 24 H 1.08995 * 109.47898 * 59.99736 * 1 2 3 25 25 H 1.09007 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47121 * 89.99811 * 6 5 4 27 27 H 1.08998 * 109.47324 * 209.99886 * 6 5 4 28 28 H 1.08996 * 109.46947 * 330.00259 * 6 5 4 29 29 H 1.08004 * 120.77248 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.47086 * 89.99359 * 10 9 8 31 31 H 1.08993 * 109.47333 * 209.99873 * 10 9 8 32 32 H 1.09000 * 109.46992 * 329.99545 * 10 9 8 33 33 H 1.08993 * 109.47237 * 59.99587 * 13 11 9 34 34 H 1.08998 * 109.47305 * 179.97438 * 13 11 9 35 35 H 1.09005 * 109.46948 * 299.99735 * 13 11 9 36 36 H 0.97003 * 119.99821 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3069 2.3059 0.0005 5 6 1.8711 3.5049 0.0000 6 6 1.0190 4.7479 0.0012 7 6 3.2488 3.6029 -0.0016 8 6 3.9994 2.4256 -0.0032 9 7 5.3838 2.4745 -0.0054 10 6 6.1595 1.2558 -0.2491 11 6 6.0723 3.7449 0.2359 12 1 5.3402 4.5135 0.4840 13 6 6.8378 4.1573 -1.0230 14 6 7.0385 3.5831 1.3810 15 1 7.1309 2.6292 1.8790 16 6 7.8048 4.6528 1.7930 17 7 7.6920 5.8145 1.1869 18 14 9.0019 4.4524 3.2128 19 1 10.3243 4.0261 2.6888 20 1 9.1459 5.7473 3.9254 21 1 8.4872 3.4246 4.1529 22 7 3.3656 1.2569 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 0.8147 5.0474 1.0292 27 1 1.5469 5.5509 -0.5131 28 1 0.0789 4.5444 -0.5115 29 1 3.7341 4.5677 -0.0016 30 1 6.3433 1.1498 -1.3182 31 1 7.1111 1.3191 0.2787 32 1 5.6012 0.3916 0.1111 33 1 6.1390 4.2743 -1.8512 34 1 7.3497 5.1028 -0.8436 35 1 7.5699 3.3888 -1.2711 36 1 8.2313 6.5669 1.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260275646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = 23.262357 kcal Electronic energy + Delta-G solvation = -18654.731430 eV Core-core repulsion = 15754.178331 eV Total energy + Delta-G solvation = -2900.553100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59589 -38.22667 -36.60449 -33.88503 -32.66953 -30.77878 -29.27093 -28.47910 -27.07000 -25.34924 -25.33784 -23.02354 -21.75975 -19.82124 -17.75263 -17.35528 -16.40619 -16.00225 -15.74874 -14.93887 -14.42087 -14.28249 -14.14000 -13.51886 -13.41894 -12.90970 -12.54961 -12.47000 -12.06364 -11.78602 -11.70063 -11.33158 -11.19894 -11.04645 -10.88428 -10.72676 -10.57556 -10.27601 -10.16721 -10.02693 -9.21459 -8.66162 -8.58874 -8.54359 -7.04469 -6.21073 -4.29993 1.70395 1.98264 2.89116 3.20274 3.27610 3.31537 3.90740 4.29665 4.42384 4.49842 5.09464 5.17369 5.32891 5.40614 5.51738 5.60278 5.73651 5.76778 5.82520 6.06766 6.14283 6.20028 6.22467 6.53124 6.61165 6.63717 6.76970 6.89923 7.16166 7.28298 7.51534 7.64275 7.79509 7.95921 8.13953 8.32257 8.71260 8.88576 9.37351 10.83201 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.005872 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.930713 B = 4767.485512 C = 5111.745547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.299 6.299 3 C 0.532 3.468 4 N -0.626 5.626 5 C 0.219 3.781 6 C -0.099 4.099 7 C -0.319 4.319 8 C 0.475 3.525 9 N -0.564 5.564 10 C 0.095 3.905 11 C 0.265 3.735 12 H 0.055 0.945 13 C -0.149 4.149 14 C -0.530 4.530 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 N -0.596 5.596 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.013 0.987 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -3.859 -3.072 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.201 6.201 3 C 0.227 3.773 4 N -0.363 5.363 5 C 0.080 3.920 6 C -0.156 4.156 7 C -0.348 4.348 8 C 0.230 3.770 9 N -0.271 5.271 10 C -0.048 4.048 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.208 4.208 14 C -0.568 4.568 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 N -0.335 5.335 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.128 -4.784 -3.062 11.612 hybrid contribution 0.977 0.743 0.782 1.455 sum -9.152 -4.040 -2.279 10.260 Atomic orbital electron populations 1.22815 0.76676 1.02472 1.02526 1.86008 1.22568 1.23686 1.87798 1.20074 0.85255 0.84236 0.87782 1.67759 1.40770 0.98382 1.29413 1.20870 0.91103 0.92065 0.87994 1.20682 0.99047 0.92734 1.03168 1.21957 0.94539 0.99956 1.18353 1.18265 0.86313 0.87238 0.85163 1.47289 0.99700 1.11588 1.68528 1.21526 0.96835 0.86908 0.99525 1.19130 0.91727 0.78786 0.93829 0.92703 1.22129 0.99277 1.03549 0.95863 1.21316 1.22183 0.97678 1.15645 0.91832 1.24871 0.96883 0.94918 0.96877 1.69856 1.40540 1.01285 1.40895 0.86439 0.81051 0.77658 0.82005 1.20453 1.21005 1.19834 1.66890 1.07854 1.28739 1.30014 0.92316 0.92342 0.88741 0.90154 0.90294 0.90699 0.83491 0.94311 0.90412 0.91357 0.96753 0.88579 0.94783 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.36 101.05 1.05 1.67 16 2 O -0.30 -5.18 10.56 -18.08 -0.19 -5.38 16 3 C 0.53 10.48 8.49 -91.30 -0.77 9.70 16 4 N -0.63 -11.42 9.16 -11.03 -0.10 -11.52 16 5 C 0.22 3.82 6.81 -82.34 -0.56 3.26 16 6 C -0.10 -1.25 10.21 36.01 0.37 -0.89 16 7 C -0.32 -6.28 8.97 -39.11 -0.35 -6.63 16 8 C 0.48 10.27 7.35 -154.82 -1.14 9.14 16 9 N -0.56 -12.41 2.86 -175.24 -0.50 -12.91 16 10 C 0.10 1.88 9.74 59.85 0.58 2.46 16 11 C 0.27 6.31 2.51 -69.08 -0.17 6.14 16 12 H 0.06 1.38 5.57 -51.93 -0.29 1.09 16 13 C -0.15 -3.39 9.04 37.16 0.34 -3.06 16 14 C -0.53 -13.68 7.96 -34.44 -0.27 -13.96 16 15 H 0.06 1.67 6.98 -52.48 -0.37 1.30 16 16 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -23.47 11.32 55.43 0.63 -22.84 16 18 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 N -0.60 -12.81 9.25 -13.97 -0.13 -12.94 16 23 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.15 2.86 6.09 -52.48 -0.32 2.54 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.54 6.64 -51.93 -0.34 1.20 16 32 H 0.07 1.32 7.27 -51.93 -0.38 0.94 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 35 H 0.03 0.74 7.80 -51.93 -0.41 0.34 16 36 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -28.83 300.46 -6.75 -35.58 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.93 Total: 0.69 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.03 Total: 9.48 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.10 Total: -60.21 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.19 Total: -5.38 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.83 -6.75 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.839 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds