Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35462 * 116.99823 * 2 1 4 4 N 1.32322 * 119.15240 * 0.02562 * 3 2 1 5 5 C 1.32507 * 120.95120 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.36950 * 180.02562 * 5 4 3 7 7 C 1.38118 * 119.26600 * 0.02562 * 5 4 3 8 8 C 1.39622 * 118.45445 * 0.02562 * 7 5 4 9 9 N 1.38530 * 120.49770 * 179.97438 * 8 7 5 10 10 C 1.46506 * 120.00280 * 190.99846 * 9 8 7 11 11 C 1.46503 * 120.00242 * 10.99027 * 9 8 7 12 12 H 1.09005 * 109.46773 * 5.07007 * 11 9 8 13 13 C 1.52997 * 109.47560 * 245.07165 * 11 9 8 14 14 C 1.50698 * 109.46937 * 125.06729 * 11 9 8 15 15 H 1.08004 * 120.00290 * 0.02562 * 14 11 9 16 16 C 1.37881 * 120.00139 * 180.02562 * 14 11 9 17 17 N 1.31510 * 119.99593 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00247 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46930 * 90.00288 * 18 16 14 20 20 H 1.48501 * 109.47205 * 210.00186 * 18 16 14 21 21 H 1.48495 * 109.47079 * 330.00333 * 18 16 14 22 22 N 1.32257 * 119.15974 * 180.02562 * 3 2 1 23 23 H 1.09007 * 109.46932 * 299.99392 * 1 2 3 24 24 H 1.08995 * 109.47898 * 59.99736 * 1 2 3 25 25 H 1.09007 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47121 * 89.99811 * 6 5 4 27 27 H 1.08998 * 109.47324 * 209.99886 * 6 5 4 28 28 H 1.08996 * 109.46947 * 330.00259 * 6 5 4 29 29 H 1.08004 * 120.77248 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.47086 * 89.99359 * 10 9 8 31 31 H 1.08993 * 109.47333 * 209.99873 * 10 9 8 32 32 H 1.09000 * 109.46992 * 329.99545 * 10 9 8 33 33 H 1.08993 * 109.47237 * 59.99587 * 13 11 9 34 34 H 1.08998 * 109.47305 * 179.97438 * 13 11 9 35 35 H 1.09005 * 109.46948 * 299.99735 * 13 11 9 36 36 H 0.97003 * 119.99821 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3069 2.3059 0.0005 5 6 1.8711 3.5049 0.0000 6 6 1.0190 4.7479 0.0012 7 6 3.2488 3.6029 -0.0016 8 6 3.9994 2.4256 -0.0032 9 7 5.3838 2.4745 -0.0054 10 6 6.1595 1.2558 -0.2491 11 6 6.0723 3.7449 0.2359 12 1 5.3402 4.5135 0.4840 13 6 6.8378 4.1573 -1.0230 14 6 7.0385 3.5831 1.3810 15 1 7.1309 2.6292 1.8790 16 6 7.8048 4.6528 1.7930 17 7 7.6920 5.8145 1.1869 18 14 9.0019 4.4524 3.2128 19 1 10.3243 4.0261 2.6888 20 1 9.1459 5.7473 3.9254 21 1 8.4872 3.4246 4.1529 22 7 3.3656 1.2569 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 0.8147 5.0474 1.0292 27 1 1.5469 5.5509 -0.5131 28 1 0.0789 4.5444 -0.5115 29 1 3.7341 4.5677 -0.0016 30 1 6.3433 1.1498 -1.3182 31 1 7.1111 1.3191 0.2787 32 1 5.6012 0.3916 0.1111 33 1 6.1390 4.2743 -1.8512 34 1 7.3497 5.1028 -0.8436 35 1 7.5699 3.3888 -1.2711 36 1 8.2313 6.5669 1.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260275646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = 4.573987 kcal Electronic energy + Delta-G solvation = -18655.541819 eV Core-core repulsion = 15754.178331 eV Total energy + Delta-G solvation = -2901.363488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.06862 -39.63227 -38.19160 -35.52043 -34.37640 -32.29220 -31.03707 -29.74256 -28.21606 -27.30692 -26.85183 -24.52870 -23.30772 -21.46475 -19.17714 -18.92838 -18.21129 -17.40571 -17.32651 -16.72841 -15.87392 -15.67544 -15.60189 -15.10181 -14.79855 -14.45569 -14.00330 -13.69368 -13.55536 -13.17088 -13.02346 -12.91555 -12.78744 -12.71144 -12.66258 -12.36001 -12.15311 -12.07994 -11.72725 -11.58314 -11.08204 -10.53571 -10.13988 -10.07518 -8.69679 -8.15750 -6.32462 0.23889 0.44361 1.41722 1.43742 1.50553 1.55719 2.31007 2.46853 2.91674 3.10785 3.18849 3.79359 4.05307 4.33838 4.46108 4.46483 4.49433 4.54695 4.66906 4.69204 4.78407 4.80802 4.88437 4.95790 4.99618 5.00434 5.07059 5.33758 5.40944 5.61320 5.63184 5.91683 6.05046 6.24345 6.47224 6.61875 6.78165 7.31482 7.40508 8.85837 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.005872 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.930713 B = 4767.485512 C = 5111.745547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.311 6.311 3 C 0.522 3.478 4 N -0.617 5.617 5 C 0.225 3.775 6 C -0.095 4.095 7 C -0.338 4.338 8 C 0.457 3.543 9 N -0.577 5.577 10 C 0.101 3.899 11 C 0.272 3.728 12 H 0.038 0.962 13 C -0.136 4.136 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.028 3.972 17 N -0.907 5.907 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.277 1.277 22 N -0.619 5.619 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -3.927 -2.984 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.213 6.213 3 C 0.217 3.783 4 N -0.354 5.354 5 C 0.085 3.915 6 C -0.152 4.152 7 C -0.366 4.366 8 C 0.214 3.786 9 N -0.285 5.285 10 C -0.042 4.042 11 C 0.171 3.829 12 H 0.056 0.944 13 C -0.195 4.195 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.173 4.173 17 N -0.546 5.546 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.202 1.202 22 N -0.358 5.358 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.162 0.838 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.375 -4.876 -2.982 12.730 hybrid contribution 1.192 0.715 0.743 1.576 sum -10.183 -4.161 -2.239 11.226 Atomic orbital electron populations 1.23191 0.73927 1.05045 1.02833 1.86016 1.25251 1.22718 1.87355 1.20395 0.85111 0.85382 0.87384 1.67935 1.40168 0.98321 1.29019 1.21627 0.90931 0.93391 0.85529 1.20825 0.99072 0.90679 1.04617 1.22063 0.95601 0.99236 1.19742 1.18502 0.86253 0.88088 0.85793 1.47180 1.00210 1.11405 1.69741 1.21505 0.96224 0.86242 1.00190 1.18866 0.91035 0.79346 0.93625 0.94392 1.21939 0.99211 1.02427 0.95888 1.21509 1.22955 0.97380 1.16497 0.92881 1.25518 0.98191 0.94685 0.98858 1.69945 1.41116 1.01707 1.41803 0.85557 0.79305 0.77447 0.79320 1.19783 1.20554 1.20230 1.66838 1.09077 1.28952 1.30960 0.92093 0.91838 0.85122 0.88543 0.88850 0.88834 0.83820 0.93067 0.91050 0.91367 0.95505 0.90467 0.94636 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.36 113.37 1.17 2.15 16 2 O -0.31 -10.41 10.56 -87.60 -0.92 -11.33 16 3 C 0.52 20.15 8.49 180.59 1.53 21.69 16 4 N -0.62 -21.55 9.16 -301.76 -2.76 -24.32 16 5 C 0.23 7.53 6.81 42.43 0.29 7.82 16 6 C -0.09 -2.14 10.21 71.24 0.73 -1.41 16 7 C -0.34 -13.25 8.97 22.58 0.20 -13.04 16 8 C 0.46 19.91 7.35 133.18 0.98 20.89 16 9 N -0.58 -25.71 2.86 -708.35 -2.02 -27.74 16 10 C 0.10 4.03 9.74 127.77 1.24 5.27 16 11 C 0.27 13.14 2.51 44.24 0.11 13.25 16 12 H 0.04 1.96 5.57 -2.38 -0.01 1.95 16 13 C -0.14 -6.20 9.04 71.98 0.65 -5.55 16 14 C -0.54 -28.47 7.96 25.60 0.20 -28.26 16 15 H 0.05 2.83 6.98 -2.91 -0.02 2.81 16 16 C 0.03 1.47 5.30 84.66 0.45 1.92 16 17 N -0.91 -48.11 11.32 21.45 0.24 -47.86 16 18 Si 0.96 41.62 29.54 68.60 2.03 43.65 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 N -0.62 -26.59 9.25 -311.09 -2.88 -29.47 16 23 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 24 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 25 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.14 5.65 6.09 -2.91 -0.02 5.63 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.87 6.64 -2.39 -0.02 2.86 16 32 H 0.07 2.67 7.27 -2.39 -0.02 2.65 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 3.83 6.07 -2.39 -0.01 3.82 16 35 H 0.03 1.55 7.80 -2.38 -0.02 1.54 16 36 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -61.20 300.46 2.32 -58.88 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.08 Total: 13.49 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 7.56 Total: 24.71 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -7.42 Total: -129.39 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.92 Total: -11.33 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -61.20 2.32 -58.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.457 kcal (2) G-P(sol) polarization free energy of solvation -61.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds