Wall clock time and date at job start Sun Mar 29 2020 22:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 114.00005 * 2 1 4 4 C 1.50700 * 109.47030 * 179.97438 * 3 2 1 5 5 N 1.31790 * 119.08749 * 269.98133 * 4 3 2 6 6 C 1.32547 * 121.01628 * 180.02562 * 5 4 3 7 7 C 1.50693 * 120.40629 * 179.97438 * 6 5 4 8 8 C 1.38124 * 119.19054 * 359.74077 * 6 5 4 9 9 C 1.39616 * 118.33671 * 0.52088 * 8 6 5 10 10 N 1.38545 * 120.53186 * 179.75785 * 9 8 6 11 11 C 1.46498 * 120.00162 * 184.44711 * 10 9 8 12 12 C 1.46499 * 120.00015 * 4.71973 * 10 9 8 13 13 C 1.50694 * 109.47250 * 90.00085 * 12 10 9 14 14 H 1.07999 * 119.99904 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00013 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47430 * 60.00091 * 17 15 13 19 19 H 1.48504 * 109.46997 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47214 * 299.99538 * 17 15 13 21 21 N 1.31750 * 119.08346 * 90.00399 * 4 3 2 22 22 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46775 * 299.99687 * 1 2 3 24 24 H 1.08997 * 109.46660 * 59.99791 * 1 2 3 25 25 H 1.09005 * 109.46826 * 60.00470 * 3 2 1 26 26 H 1.08997 * 109.47588 * 299.99821 * 3 2 1 27 27 H 1.08999 * 109.47393 * 89.99265 * 7 6 5 28 28 H 1.08993 * 109.47308 * 210.00114 * 7 6 5 29 29 H 1.09002 * 109.46879 * 329.99602 * 7 6 5 30 30 H 1.08006 * 120.83028 * 180.25301 * 8 6 5 31 31 H 1.09002 * 109.47728 * 89.99589 * 11 10 9 32 32 H 1.09002 * 109.47489 * 209.99968 * 11 10 9 33 33 H 1.09008 * 109.47031 * 330.00059 * 11 10 9 34 34 H 1.09003 * 109.47296 * 210.00210 * 12 10 9 35 35 H 1.08997 * 109.47026 * 329.99763 * 12 10 9 36 36 H 0.96998 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.1508 1.1364 1.1526 6 6 5.4714 1.0323 1.1978 7 6 6.1873 0.9768 2.5227 8 6 6.1831 0.9704 0.0156 9 6 5.4768 1.0316 -1.1871 10 7 6.1453 0.9785 -2.3995 11 6 5.4040 1.1415 -3.6525 12 6 7.5926 0.7535 -2.4286 13 6 7.8696 -0.7261 -2.4982 14 1 7.0496 -1.4286 -2.5190 15 6 9.1699 -1.1830 -2.5352 16 7 10.1685 -0.3277 -2.5103 17 14 9.5132 -3.0172 -2.6221 18 1 8.9009 -3.5777 -3.8534 19 1 10.9804 -3.2453 -2.6515 20 1 8.9316 -3.6867 -1.4310 21 7 4.1515 1.1357 -1.1505 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.6887 1.8463 0.8901 26 1 1.6887 1.8464 -0.8899 27 1 6.2790 -0.0611 2.8429 28 1 7.1802 1.4138 2.4178 29 1 5.6202 1.5375 3.2657 30 1 7.2595 0.8813 0.0215 31 1 5.3744 2.1971 -3.9226 32 1 5.8988 0.5778 -4.4434 33 1 4.3870 0.7708 -3.5238 34 1 8.0191 1.2445 -3.3033 35 1 8.0426 1.1654 -1.5253 36 1 11.0833 -0.6491 -2.5367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268077745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:16 Heat of formation + Delta-G solvation = 7.307447 kcal Electronic energy + Delta-G solvation = -18311.575868 eV Core-core repulsion = 15410.330912 eV Total energy + Delta-G solvation = -2901.244956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40965 -37.72713 -36.43527 -33.69229 -32.76730 -31.26225 -28.55054 -28.39724 -27.29136 -25.71650 -25.10234 -23.27256 -21.42492 -20.25395 -17.19109 -16.67511 -16.50611 -16.28457 -15.43294 -15.23081 -14.74064 -14.49081 -14.21452 -13.58895 -13.41040 -13.14087 -12.46430 -12.38255 -12.25190 -12.14412 -11.96936 -11.51462 -11.40940 -11.30843 -11.01209 -10.75331 -10.37600 -10.26214 -9.87338 -9.67820 -9.61017 -8.99200 -8.61108 -8.56673 -7.06477 -6.18027 -4.27582 1.57111 2.03384 3.24542 3.28712 3.32333 3.57855 3.86344 4.31988 4.45633 4.68440 4.79584 5.13050 5.22970 5.27350 5.34290 5.41457 5.56227 5.61521 5.71709 5.85074 5.88320 5.97522 6.08876 6.14811 6.23756 6.36516 6.41371 6.85276 7.01429 7.10982 7.15199 7.47480 7.74446 8.01920 8.13145 8.18522 8.76869 8.92266 9.39924 10.86451 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005789 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.030601 B = 4835.974146 C = 5127.390701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.141 3.859 4 C 0.349 3.651 5 N -0.564 5.564 6 C 0.184 3.816 7 C -0.098 4.098 8 C -0.271 4.271 9 C 0.446 3.554 10 N -0.577 5.577 11 C 0.099 3.901 12 C 0.248 3.752 13 C -0.538 4.538 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.578 5.578 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 4.164 4.901 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C 0.063 3.937 4 C 0.078 3.922 5 N -0.288 5.288 6 C 0.044 3.956 7 C -0.155 4.155 8 C -0.299 4.299 9 C 0.202 3.798 10 N -0.285 5.285 11 C -0.044 4.044 12 C 0.129 3.871 13 C -0.576 4.576 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 N -0.306 5.306 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.548 4.076 4.666 13.994 hybrid contribution 1.082 -0.968 -0.252 1.474 sum -11.466 3.108 4.413 12.673 Atomic orbital electron populations 1.22732 0.80851 1.02751 0.99907 1.87966 1.19583 1.26917 1.95418 1.20850 0.86073 0.85396 1.01382 1.21965 0.95358 0.91483 0.83431 1.67875 1.09587 1.21665 1.29650 1.21202 0.89115 0.90060 0.95261 1.20652 0.99382 1.03118 0.92377 1.22174 1.03123 1.12702 0.91940 1.18539 0.87385 0.86603 0.87301 1.47053 1.09434 1.70520 1.01510 1.21495 0.97188 0.99750 0.86011 1.19475 0.72071 0.96852 0.98702 1.21468 0.92330 0.91850 1.51993 0.92200 1.24928 0.95841 0.98305 0.94661 1.69906 0.99251 1.34273 1.49689 0.86535 0.77116 0.84822 0.78906 1.20109 1.21039 1.20057 1.67621 1.08211 1.24173 1.30610 0.89645 0.94010 0.93991 0.91064 0.91153 0.90281 0.90507 0.90729 0.83240 0.94229 0.91321 0.91259 0.94194 0.94254 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.01 10.69 -35.23 -0.38 -6.39 16 3 C 0.14 2.13 6.37 36.01 0.23 2.35 16 4 C 0.35 6.70 7.27 -157.24 -1.14 5.55 16 5 N -0.56 -10.88 10.27 -7.07 -0.07 -10.95 16 6 C 0.18 3.44 6.82 -82.33 -0.56 2.88 16 7 C -0.10 -1.39 10.21 36.00 0.37 -1.02 16 8 C -0.27 -5.65 9.00 -39.11 -0.35 -6.01 16 9 C 0.45 9.78 7.39 -154.78 -1.14 8.64 16 10 N -0.58 -12.74 2.96 -182.93 -0.54 -13.28 16 11 C 0.10 1.86 10.51 59.85 0.63 2.49 16 12 C 0.25 6.10 5.02 -5.20 -0.03 6.07 16 13 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.58 -12.04 9.13 -9.97 -0.09 -12.13 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.15 3.19 6.16 -52.48 -0.32 2.87 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.07 1.27 7.34 -51.92 -0.38 0.89 16 34 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.04 1.00 6.05 -51.93 -0.31 0.68 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -30.81 310.68 -7.20 -38.01 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.20 Total: -1.15 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.31 Total: 9.29 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.03 Total: -60.49 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.38 Total: -6.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.81 -7.20 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268077745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.318 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds