Wall clock time and date at job start Sun Mar 29 2020 22:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 114.00005 * 2 1 4 4 C 1.50700 * 109.47030 * 179.97438 * 3 2 1 5 5 N 1.31790 * 119.08749 * 269.98133 * 4 3 2 6 6 C 1.32547 * 121.01628 * 180.02562 * 5 4 3 7 7 C 1.50693 * 120.40629 * 179.97438 * 6 5 4 8 8 C 1.38124 * 119.19054 * 359.74077 * 6 5 4 9 9 C 1.39616 * 118.33671 * 0.52088 * 8 6 5 10 10 N 1.38545 * 120.53186 * 179.75785 * 9 8 6 11 11 C 1.46498 * 120.00162 * 184.44711 * 10 9 8 12 12 C 1.46499 * 120.00015 * 4.71973 * 10 9 8 13 13 C 1.50694 * 109.47250 * 90.00085 * 12 10 9 14 14 H 1.07999 * 119.99904 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00013 * 180.02562 * 13 12 10 16 16 N 1.31510 * 120.00477 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47430 * 60.00091 * 17 15 13 19 19 H 1.48504 * 109.46997 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47214 * 299.99538 * 17 15 13 21 21 N 1.31750 * 119.08346 * 90.00399 * 4 3 2 22 22 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46775 * 299.99687 * 1 2 3 24 24 H 1.08997 * 109.46660 * 59.99791 * 1 2 3 25 25 H 1.09005 * 109.46826 * 60.00470 * 3 2 1 26 26 H 1.08997 * 109.47588 * 299.99821 * 3 2 1 27 27 H 1.08999 * 109.47393 * 89.99265 * 7 6 5 28 28 H 1.08993 * 109.47308 * 210.00114 * 7 6 5 29 29 H 1.09002 * 109.46879 * 329.99602 * 7 6 5 30 30 H 1.08006 * 120.83028 * 180.25301 * 8 6 5 31 31 H 1.09002 * 109.47728 * 89.99589 * 11 10 9 32 32 H 1.09002 * 109.47489 * 209.99968 * 11 10 9 33 33 H 1.09008 * 109.47031 * 330.00059 * 11 10 9 34 34 H 1.09003 * 109.47296 * 210.00210 * 12 10 9 35 35 H 1.08997 * 109.47026 * 329.99763 * 12 10 9 36 36 H 0.96998 * 120.00607 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.1508 1.1364 1.1526 6 6 5.4714 1.0323 1.1978 7 6 6.1873 0.9768 2.5227 8 6 6.1831 0.9704 0.0156 9 6 5.4768 1.0316 -1.1871 10 7 6.1453 0.9785 -2.3995 11 6 5.4040 1.1415 -3.6525 12 6 7.5926 0.7535 -2.4286 13 6 7.8696 -0.7261 -2.4982 14 1 7.0496 -1.4286 -2.5190 15 6 9.1699 -1.1830 -2.5352 16 7 10.1685 -0.3277 -2.5103 17 14 9.5132 -3.0172 -2.6221 18 1 8.9009 -3.5777 -3.8534 19 1 10.9804 -3.2453 -2.6515 20 1 8.9316 -3.6867 -1.4310 21 7 4.1515 1.1357 -1.1505 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.6887 1.8463 0.8901 26 1 1.6887 1.8464 -0.8899 27 1 6.2790 -0.0611 2.8429 28 1 7.1802 1.4138 2.4178 29 1 5.6202 1.5375 3.2657 30 1 7.2595 0.8813 0.0215 31 1 5.3744 2.1971 -3.9226 32 1 5.8988 0.5778 -4.4434 33 1 4.3870 0.7708 -3.5238 34 1 8.0191 1.2445 -3.3033 35 1 8.0426 1.1654 -1.5253 36 1 11.0833 -0.6491 -2.5367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268077745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:16 Heat of formation + Delta-G solvation = -11.719208 kcal Electronic energy + Delta-G solvation = -18312.400926 eV Core-core repulsion = 15410.330912 eV Total energy + Delta-G solvation = -2902.070014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92997 -38.87967 -38.04853 -35.27512 -34.64511 -32.81985 -30.12027 -29.73229 -28.78815 -26.85790 -26.59895 -25.12521 -22.83182 -21.89163 -18.75474 -18.66395 -17.95671 -17.52412 -16.68006 -16.58171 -16.38873 -16.03793 -15.77813 -15.21580 -14.98144 -14.43541 -14.09372 -13.67682 -13.57136 -13.42170 -13.20572 -13.13066 -12.99145 -12.78638 -12.60677 -12.35089 -12.22755 -11.99055 -11.50282 -11.43961 -10.68869 -10.66725 -10.54142 -10.14387 -8.79545 -8.20699 -6.41848 0.06405 0.46114 1.38282 1.38902 1.47459 2.03254 2.37228 2.54413 3.02174 3.04024 3.31088 3.52939 3.83944 4.15481 4.32332 4.38256 4.43674 4.52824 4.57137 4.59588 4.63448 4.64322 4.77773 4.87232 4.88344 4.90553 5.06203 5.08848 5.11819 5.50548 5.60082 5.85995 5.98359 6.16589 6.44490 6.50868 6.72111 7.27455 7.37090 8.79018 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.005789 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.030601 B = 4835.974146 C = 5127.390701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.145 3.855 4 C 0.338 3.662 5 N -0.568 5.568 6 C 0.188 3.812 7 C -0.095 4.095 8 C -0.297 4.297 9 C 0.427 3.573 10 N -0.589 5.589 11 C 0.102 3.898 12 C 0.265 3.735 13 C -0.551 4.551 14 H 0.044 0.956 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.276 1.276 21 N -0.587 5.587 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.026 0.974 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 3.835 5.735 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C 0.067 3.933 4 C 0.068 3.932 5 N -0.291 5.291 6 C 0.047 3.953 7 C -0.152 4.152 8 C -0.325 4.325 9 C 0.184 3.816 10 N -0.298 5.298 11 C -0.041 4.041 12 C 0.144 3.856 13 C -0.589 4.589 14 H 0.063 0.937 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.783 3.217 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.201 1.201 21 N -0.315 5.315 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.154 0.846 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.788 3.757 5.498 15.312 hybrid contribution 1.357 -0.841 -0.454 1.659 sum -12.432 2.917 5.043 13.729 Atomic orbital electron populations 1.22988 0.78147 1.04036 1.01577 1.87903 1.22533 1.27247 1.95749 1.20963 0.83377 0.85732 1.03264 1.22927 0.97397 0.89921 0.82994 1.68055 1.09623 1.21797 1.29619 1.21875 0.89191 0.87838 0.96373 1.20777 0.99807 1.04246 0.90363 1.22208 1.02660 1.14840 0.92777 1.18792 0.88205 0.87152 0.87440 1.46972 1.08672 1.71442 1.02737 1.21575 0.96778 1.00995 0.84760 1.19064 0.73776 0.95451 0.97315 1.21606 0.92197 0.92771 1.52354 0.93736 1.25636 0.95565 1.02312 0.94134 1.69986 0.99624 1.35998 1.50070 0.85603 0.77376 0.79898 0.78780 1.19663 1.19949 1.20106 1.67697 1.07554 1.24733 1.31543 0.88647 0.92090 0.92511 0.88770 0.89605 0.89169 0.89272 0.88725 0.84551 0.92307 0.91471 0.90987 0.95436 0.95585 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.42 -12.34 10.69 -148.98 -1.59 -13.94 16 3 C 0.14 4.06 6.37 71.24 0.45 4.51 16 4 C 0.34 12.65 7.27 138.76 1.01 13.66 16 5 N -0.57 -21.19 10.27 -176.28 -1.81 -23.00 16 6 C 0.19 6.91 6.82 42.42 0.29 7.20 16 7 C -0.09 -2.53 10.21 71.23 0.73 -1.80 16 8 C -0.30 -12.58 9.00 22.58 0.20 -12.37 16 9 C 0.43 19.01 7.39 133.16 0.98 19.99 16 10 N -0.59 -26.55 2.96 -732.66 -2.17 -28.72 16 11 C 0.10 3.82 10.51 127.77 1.34 5.16 16 12 C 0.26 13.39 5.02 85.63 0.43 13.82 16 13 C -0.55 -30.24 9.39 25.60 0.24 -30.00 16 14 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 15 C 0.02 1.31 5.46 84.65 0.46 1.78 16 16 N -0.92 -51.46 13.29 21.45 0.28 -51.18 16 17 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 N -0.59 -24.31 9.13 -185.45 -1.69 -26.00 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.14 6.05 6.16 -2.91 -0.02 6.04 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.07 2.64 7.34 -2.38 -0.02 2.62 16 34 H 0.03 1.44 8.07 -2.39 -0.02 1.43 16 35 H 0.03 1.38 6.05 -2.39 -0.01 1.37 16 36 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -65.70 310.68 3.50 -62.20 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.06 Total: 11.79 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 7.39 Total: 23.71 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -5.39 Total: -128.90 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.59 Total: -13.94 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.70 3.50 -62.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268077745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.483 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds