Wall clock time and date at job start Sun Mar 29 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47406 * 59.99814 * 8 6 5 10 10 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 11 11 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 12 12 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 13 13 C 1.46509 * 125.97450 * 359.96761 * 12 2 1 14 14 C 1.50698 * 109.47025 * 89.99735 * 13 12 2 15 15 H 1.08000 * 120.00464 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99358 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00418 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46890 * 120.00230 * 18 16 14 21 21 H 1.48501 * 109.46779 * 239.99778 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 25 25 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 26 26 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 27 27 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 28 28 H 1.09001 * 109.46920 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.46832 * 299.99560 * 9 8 6 30 30 H 1.08994 * 109.46700 * 60.00045 * 9 8 6 31 31 H 1.09003 * 109.47142 * 59.99472 * 10 8 6 32 32 H 1.08992 * 109.47220 * 179.97438 * 10 8 6 33 33 H 1.09003 * 109.46799 * 299.99945 * 10 8 6 34 34 H 1.08994 * 109.46750 * 210.00045 * 13 12 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 13 12 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 6.6933 3.4177 -1.2338 10 6 5.4279 5.1658 0.0247 11 7 3.6337 -0.6577 -0.0036 12 7 2.3017 -1.0909 -0.0059 13 6 1.8500 -2.4847 -0.0128 14 6 1.6945 -2.9553 -1.4359 15 1 1.9108 -2.2836 -2.2535 16 6 1.2770 -4.2437 -1.6941 17 7 1.0140 -5.0617 -0.6985 18 14 1.0848 -4.8273 -3.4582 19 1 1.4409 -3.7240 -4.3861 20 1 1.9842 -5.9844 -3.6975 21 1 -0.3229 -5.2377 -3.6932 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5186 24 1 -0.3633 0.8928 -0.5090 25 1 1.9719 2.1210 -0.0004 26 1 5.6584 1.0776 0.0049 27 1 6.4547 3.4893 0.9060 28 1 7.5769 4.0560 -1.2315 29 1 7.0002 2.3718 -1.2392 30 1 6.0973 3.6262 -2.1222 31 1 4.8330 5.3656 0.9159 32 1 6.3116 5.8037 0.0276 33 1 4.8320 5.3739 -0.8640 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271122161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:04 Heat of formation + Delta-G solvation = 24.580551 kcal Electronic energy + Delta-G solvation = -18149.604274 eV Core-core repulsion = 15249.108335 eV Total energy + Delta-G solvation = -2900.495938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75399 -39.46888 -34.86412 -34.61876 -33.32343 -31.38458 -30.79085 -27.33985 -26.73883 -26.32396 -24.24446 -22.67798 -20.62135 -19.76260 -18.93942 -16.87363 -16.67893 -16.17387 -15.49817 -15.29791 -14.45825 -14.41728 -14.05141 -13.75280 -13.09178 -12.93893 -12.48898 -12.46883 -12.31894 -12.11571 -12.06111 -11.65161 -11.42612 -11.34707 -11.24177 -11.05600 -10.85802 -10.40902 -10.24630 -9.88925 -9.50731 -9.46763 -8.65515 -7.92519 -7.44312 -6.26147 -4.33840 2.36228 2.81483 2.93644 3.19803 3.27766 3.34094 3.73503 3.88497 4.29915 4.54081 4.70527 4.77978 5.07461 5.16255 5.40575 5.46002 5.52523 5.64887 5.72339 5.75389 5.94904 5.96685 6.09286 6.10333 6.27412 6.48199 6.58192 6.74773 6.93564 7.05150 7.47792 7.66261 7.68296 7.88525 8.05999 8.30684 8.66267 8.75484 9.32699 10.81098 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.004706 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.732476 B = 5948.390967 C = 6307.112988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.091 3.909 3 C -0.291 4.291 4 C 0.262 3.738 5 N -0.631 5.631 6 C 0.520 3.480 7 O -0.517 6.517 8 C -0.109 4.109 9 C -0.147 4.147 10 C -0.132 4.132 11 N -0.322 5.322 12 N -0.317 5.317 13 C 0.258 3.742 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.280 1.280 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.159 0.841 26 H 0.409 0.591 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 14.865 1.677 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.322 4.322 4 C 0.009 3.991 5 N -0.279 5.279 6 C 0.306 3.694 7 O -0.390 6.390 8 C -0.131 4.131 9 C -0.205 4.205 10 C -0.190 4.190 11 N -0.152 5.152 12 N -0.099 5.099 13 C 0.140 3.860 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.089 0.911 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.176 0.824 26 H 0.245 0.755 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.215 13.875 1.721 15.733 hybrid contribution -0.014 -0.146 -0.905 0.917 sum 7.201 13.729 0.816 15.524 Atomic orbital electron populations 1.20377 0.87925 1.03857 1.02523 1.21069 0.94918 0.87167 1.00897 1.21249 0.89780 0.99770 1.21354 1.19051 0.87385 0.89616 1.03010 1.42570 1.07405 1.05269 1.72658 1.20738 0.91486 0.81385 0.75829 1.90635 1.26962 1.73866 1.47579 1.21284 0.94581 0.96131 1.01098 1.21826 0.99728 1.02340 0.96579 1.21619 1.01225 0.92607 1.03538 1.77247 0.99952 1.08570 1.29468 1.48990 1.00983 1.07768 1.52201 1.19694 0.95978 0.71356 0.98942 1.21370 1.46691 0.97978 0.91387 0.91697 1.24930 0.94678 0.96036 0.98139 1.69926 1.44983 1.06953 1.31088 0.86305 0.77884 0.78787 0.83750 1.19583 1.20650 1.20614 0.91089 0.89905 0.90633 0.82397 0.75547 0.88275 0.91258 0.91944 0.91810 0.91816 0.92003 0.91756 0.93008 0.92794 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.11 9.52 -39.83 -0.38 -6.49 16 4 C 0.26 5.43 8.11 -154.38 -1.25 4.18 16 5 N -0.63 -9.91 5.34 -11.13 -0.06 -9.97 16 6 C 0.52 7.51 7.12 -10.98 -0.08 7.43 16 7 O -0.52 -9.22 13.11 5.55 0.07 -9.14 16 8 C -0.11 -1.04 3.26 -91.77 -0.30 -1.33 16 9 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 10 C -0.13 -1.20 8.48 37.16 0.32 -0.88 16 11 N -0.32 -7.54 12.59 31.44 0.40 -7.14 16 12 N -0.32 -7.62 3.59 -58.32 -0.21 -7.83 16 13 C 0.26 6.67 5.81 -5.19 -0.03 6.64 16 14 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 15 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 18 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 26 H 0.41 5.18 8.24 -40.82 -0.34 4.84 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -32.21 308.22 -6.64 -38.85 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.18 Total: 3.38 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.02 Total: -4.55 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.86 Total: -49.29 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.21 -6.64 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271122161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.434 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds