Wall clock time and date at job start Sun Mar 29 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47406 * 59.99814 * 8 6 5 10 10 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 11 11 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 12 12 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 13 13 C 1.46509 * 125.97450 * 359.96761 * 12 2 1 14 14 C 1.50698 * 109.47025 * 89.99735 * 13 12 2 15 15 H 1.08000 * 120.00464 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99358 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00418 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46890 * 120.00230 * 18 16 14 21 21 H 1.48501 * 109.46779 * 239.99778 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 25 25 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 26 26 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 27 27 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 28 28 H 1.09001 * 109.46920 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.46832 * 299.99560 * 9 8 6 30 30 H 1.08994 * 109.46700 * 60.00045 * 9 8 6 31 31 H 1.09003 * 109.47142 * 59.99472 * 10 8 6 32 32 H 1.08992 * 109.47220 * 179.97438 * 10 8 6 33 33 H 1.09003 * 109.46799 * 299.99945 * 10 8 6 34 34 H 1.08994 * 109.46750 * 210.00045 * 13 12 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 13 12 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 6.6933 3.4177 -1.2338 10 6 5.4279 5.1658 0.0247 11 7 3.6337 -0.6577 -0.0036 12 7 2.3017 -1.0909 -0.0059 13 6 1.8500 -2.4847 -0.0128 14 6 1.6945 -2.9553 -1.4359 15 1 1.9108 -2.2836 -2.2535 16 6 1.2770 -4.2437 -1.6941 17 7 1.0140 -5.0617 -0.6985 18 14 1.0848 -4.8273 -3.4582 19 1 1.4409 -3.7240 -4.3861 20 1 1.9842 -5.9844 -3.6975 21 1 -0.3229 -5.2377 -3.6932 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5186 24 1 -0.3633 0.8928 -0.5090 25 1 1.9719 2.1210 -0.0004 26 1 5.6584 1.0776 0.0049 27 1 6.4547 3.4893 0.9060 28 1 7.5769 4.0560 -1.2315 29 1 7.0002 2.3718 -1.2392 30 1 6.0973 3.6262 -2.1222 31 1 4.8330 5.3656 0.9159 32 1 6.3116 5.8037 0.0276 33 1 4.8320 5.3739 -0.8640 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271122161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:04 Heat of formation + Delta-G solvation = 4.091006 kcal Electronic energy + Delta-G solvation = -18150.492767 eV Core-core repulsion = 15249.108335 eV Total energy + Delta-G solvation = -2901.384432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32871 -40.78923 -36.37827 -35.57562 -35.18860 -32.96426 -32.61707 -28.71132 -27.99304 -27.83664 -25.64780 -24.35707 -21.93879 -21.27280 -20.33579 -18.81468 -18.00301 -17.68758 -17.09283 -16.67422 -16.16438 -15.90345 -15.35817 -14.85383 -14.68841 -14.34542 -13.83031 -13.80027 -13.59571 -13.55195 -13.16838 -13.12438 -12.87880 -12.75724 -12.70122 -12.27395 -12.09865 -12.04282 -11.97318 -11.54916 -11.34009 -10.77356 -10.72299 -9.60070 -9.15459 -8.34095 -6.51974 0.90649 1.33701 1.36377 1.39331 1.43944 1.51959 2.20123 2.29120 2.41626 2.95556 3.52702 3.86109 4.00533 4.05888 4.13838 4.43397 4.48785 4.74294 4.77654 4.80973 4.85309 4.90415 4.95797 4.98409 4.99738 5.09910 5.12611 5.24192 5.33329 5.40567 5.52565 5.79541 5.93746 6.24438 6.28485 6.60804 6.98875 7.13859 7.19281 8.72148 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.004706 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.732476 B = 5948.390967 C = 6307.112988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.301 4.301 4 C 0.270 3.730 5 N -0.625 5.625 6 C 0.516 3.484 7 O -0.552 6.552 8 C -0.098 4.098 9 C -0.146 4.146 10 C -0.132 4.132 11 N -0.359 5.359 12 N -0.343 5.343 13 C 0.275 3.725 14 C -0.554 4.554 15 H 0.048 0.952 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.165 0.835 26 H 0.424 0.576 27 H 0.130 0.870 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 16.073 1.073 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.332 4.332 4 C 0.016 3.984 5 N -0.275 5.275 6 C 0.304 3.696 7 O -0.427 6.427 8 C -0.119 4.119 9 C -0.203 4.203 10 C -0.189 4.189 11 N -0.190 5.190 12 N -0.125 5.125 13 C 0.156 3.844 14 C -0.592 4.592 15 H 0.066 0.934 16 C -0.177 4.177 17 N -0.556 5.556 18 Si 0.796 3.204 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.191 1.191 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.120 0.880 25 H 0.182 0.818 26 H 0.262 0.738 27 H 0.147 0.853 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.121 15.102 1.127 17.184 hybrid contribution -0.247 -0.402 -0.670 0.820 sum 7.874 14.700 0.457 16.682 Atomic orbital electron populations 1.20503 0.85328 1.04384 1.04135 1.21762 0.96705 0.86480 0.99411 1.21433 0.90092 0.99845 1.21847 1.19445 0.89091 0.89291 1.00619 1.42790 1.06735 1.05415 1.72522 1.21875 0.92799 0.80919 0.73965 1.90609 1.28943 1.74259 1.48930 1.21394 0.92391 0.94874 1.03261 1.21859 1.00187 1.03335 0.94931 1.21650 1.02260 0.92771 1.02236 1.77166 1.00065 1.10043 1.31689 1.48796 1.01778 1.07516 1.54430 1.19258 0.94915 0.72392 0.97829 1.21457 1.47605 0.98409 0.91702 0.93352 1.25730 0.93888 0.95836 1.02295 1.70002 1.45048 1.07436 1.33080 0.85296 0.78531 0.78074 0.78492 1.19939 1.19885 1.19120 0.88841 0.91358 0.87995 0.81766 0.73816 0.85269 0.88369 0.91547 0.93198 0.92939 0.88824 0.93323 0.95717 0.93018 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 9.89 71.24 0.70 -2.21 16 2 C 0.09 3.76 6.92 41.38 0.29 4.05 16 3 C -0.30 -12.70 9.52 22.11 0.21 -12.49 16 4 C 0.27 11.23 8.11 133.32 1.08 12.31 16 5 N -0.62 -19.10 5.34 -307.50 -1.64 -20.74 16 6 C 0.52 14.26 7.12 87.66 0.62 14.89 16 7 O -0.55 -19.40 13.11 -3.06 -0.04 -19.44 16 8 C -0.10 -1.59 3.26 -11.54 -0.04 -1.63 16 9 C -0.15 -1.89 9.09 71.98 0.65 -1.23 16 10 C -0.13 -2.07 8.48 71.98 0.61 -1.46 16 11 N -0.36 -17.20 12.59 -54.44 -0.69 -17.89 16 12 N -0.34 -16.94 3.59 -338.43 -1.22 -18.16 16 13 C 0.27 14.74 5.81 85.63 0.50 15.23 16 14 C -0.55 -31.36 9.39 25.60 0.24 -31.12 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.02 1.30 5.46 84.66 0.46 1.76 16 17 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 18 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 23 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 24 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 25 H 0.17 6.70 5.92 -2.91 -0.02 6.69 16 26 H 0.42 10.19 8.24 -92.71 -0.76 9.42 16 27 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.82 7.56 -2.39 -0.02 0.80 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 2.74 7.65 -2.39 -0.02 2.72 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -70.81 308.22 4.38 -66.43 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.32 Total: 18.09 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.33 Total: -1.91 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.26 Total: -108.44 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.04 Total: -19.44 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.81 4.38 -66.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271122161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds