Wall clock time and date at job start Sun Mar 29 2020 23:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47149 * 2 1 4 4 N 1.34251 * 126.29069 * 265.02388 * 3 2 1 5 5 H 0.96999 * 125.75735 * 0.03100 * 4 3 2 6 6 N 1.39935 * 108.49166 * 179.97438 * 4 3 2 7 7 C 1.30453 * 108.89834 * 0.02562 * 6 4 3 8 8 C 1.38048 * 126.28973 * 85.01983 * 3 2 1 9 9 C 1.47433 * 126.41287 * 0.02562 * 8 3 2 10 10 O 1.21603 * 120.00250 * 359.97438 * 9 8 3 11 11 N 1.34773 * 119.99499 * 180.02562 * 9 8 3 12 12 C 1.46503 * 119.99923 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46692 * 35.00053 * 12 11 9 14 14 C 1.50696 * 109.47153 * 154.99636 * 12 11 9 15 15 H 1.08004 * 120.00080 * 359.97438 * 14 12 11 16 16 C 1.37875 * 120.00153 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99901 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00378 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47117 * 90.00022 * 18 16 14 20 20 H 1.48499 * 109.47316 * 209.99980 * 18 16 14 21 21 H 1.48504 * 109.46884 * 329.99800 * 18 16 14 22 22 C 1.53000 * 109.47211 * 275.00043 * 12 11 9 23 23 C 1.52994 * 109.46930 * 64.99574 * 22 12 11 24 24 H 1.08994 * 109.47529 * 300.00011 * 1 2 3 25 25 H 1.08998 * 109.46689 * 60.00460 * 1 2 3 26 26 H 1.09001 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47529 * 239.99989 * 2 1 3 28 28 H 1.09003 * 109.47109 * 119.99677 * 2 1 3 29 29 H 1.07997 * 125.98782 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00686 * 359.97438 * 11 9 8 31 31 H 0.97003 * 120.00120 * 180.02562 * 17 16 14 32 32 H 1.08992 * 109.46850 * 184.99811 * 22 12 11 33 33 H 1.09000 * 109.46771 * 304.99798 * 22 12 11 34 34 H 1.09001 * 109.47498 * 299.99788 * 23 22 12 35 35 H 1.09000 * 109.47210 * 60.00493 * 23 22 12 36 36 H 1.09003 * 109.46904 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3857 2.1387 -1.0780 5 1 2.3611 1.8303 -1.9973 6 7 2.7943 3.4075 -0.6519 7 6 2.6962 3.4687 0.6475 8 6 2.2136 2.2234 1.1085 9 6 1.9528 1.8507 2.5109 10 8 1.5355 0.7400 2.7773 11 7 2.1759 2.7414 3.4975 12 6 1.9162 2.3713 4.8910 13 1 2.1585 1.3188 5.0385 14 6 2.7692 3.2156 5.8023 15 1 3.4382 3.9538 5.3852 16 6 2.6963 3.0450 7.1685 17 7 1.8828 2.1451 7.6764 18 14 3.7531 4.0921 8.2982 19 1 3.0142 5.3275 8.6629 20 1 4.0726 3.3250 9.5290 21 1 5.0127 4.4562 7.6010 22 6 0.4390 2.6047 5.2139 23 6 -0.4220 1.6572 4.3762 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9410 4.3218 1.2629 30 1 2.5084 3.6275 3.2850 31 1 1.8313 2.0253 8.6376 32 1 0.2641 2.4143 6.2727 33 1 0.1751 3.6365 4.9818 34 1 -0.2471 1.8477 3.3173 35 1 -0.1581 0.6255 4.6083 36 1 -1.4744 1.8239 4.6059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273884925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:12 Heat of formation + Delta-G solvation = 15.684036 kcal Electronic energy + Delta-G solvation = -18781.365330 eV Core-core repulsion = 15880.483610 eV Total energy + Delta-G solvation = -2900.881720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27386 -38.44929 -35.01643 -33.94139 -32.32807 -31.51002 -30.59621 -29.03900 -26.87507 -24.05608 -22.99523 -21.95578 -21.57257 -19.58278 -19.10048 -17.64978 -16.52406 -15.20442 -15.16924 -15.07478 -14.42757 -14.31996 -14.07952 -13.99046 -13.11494 -13.00680 -12.60946 -12.26773 -11.90210 -11.58656 -11.43927 -11.20934 -11.15056 -10.93769 -10.76655 -10.62590 -10.25973 -10.10154 -9.62758 -9.55325 -8.99916 -8.89550 -8.49210 -8.44347 -7.67672 -6.07735 -4.16447 1.73186 2.43151 2.76647 3.27516 3.34569 3.36807 4.17682 4.24353 4.46369 4.61295 4.92748 4.99859 5.23888 5.33723 5.43502 5.53397 5.67753 5.86963 6.01856 6.27513 6.33806 6.45705 6.53193 6.54668 6.73975 7.12644 7.18038 7.27333 7.44550 7.56388 7.59722 7.69158 7.82891 7.98148 8.24669 8.79075 8.86355 9.27612 9.51759 10.97615 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029994 B = 0.005968 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.299611 B = 4690.665171 C = 5311.578269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C 0.151 3.849 4 N -0.470 5.470 5 H 0.437 0.563 6 N -0.305 5.305 7 C 0.084 3.916 8 C -0.279 4.279 9 C 0.579 3.421 10 O -0.553 6.553 11 N -0.704 5.704 12 C 0.273 3.727 13 H 0.050 0.950 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.189 0.811 30 H 0.386 0.614 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -0.924 -14.359 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C 0.019 3.981 4 N -0.176 5.176 5 H 0.281 0.719 6 N -0.125 5.125 7 C -0.104 4.104 8 C -0.294 4.294 9 C 0.364 3.636 10 O -0.434 6.434 11 N -0.351 5.351 12 C 0.171 3.829 13 H 0.068 0.932 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.166 4.166 23 C -0.194 4.194 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.206 0.794 30 H 0.218 0.782 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.138 -1.123 -14.970 15.055 hybrid contribution 0.524 0.588 0.770 1.101 sum -0.615 -0.535 -14.200 14.223 Atomic orbital electron populations 1.21640 0.93506 1.02302 1.02325 1.20383 0.97109 0.88401 1.04410 1.21567 0.94743 0.95052 0.86783 1.46123 1.52363 1.10521 1.08606 0.71906 1.77086 1.23381 0.98352 1.13712 1.24096 0.96565 0.97906 0.91837 1.20459 1.18283 0.95597 0.95077 1.17133 0.78092 0.85120 0.83220 1.90696 1.47408 1.21420 1.83871 1.46281 1.65074 1.15272 1.08490 1.18752 0.92117 0.97454 0.74585 0.93243 1.21255 1.23587 1.20988 0.91246 0.92119 1.24873 0.95472 0.95321 0.97994 1.69897 1.36606 1.33063 1.12480 0.86482 0.80577 0.80104 0.80138 1.20595 1.21147 1.19881 1.21927 0.96181 0.96086 1.02423 1.21835 0.97127 1.00696 0.99702 0.91059 0.93583 0.91780 0.91331 0.86981 0.79384 0.78212 0.92645 0.88421 0.95130 0.94090 0.93148 0.96116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.76 5.80 -27.88 -0.16 -0.93 16 3 C 0.15 2.09 6.55 -81.60 -0.53 1.56 16 4 N -0.47 -5.62 7.29 33.86 0.25 -5.37 16 5 H 0.44 3.59 8.96 -182.72 -1.64 1.95 16 6 N -0.30 -4.31 12.63 30.86 0.39 -3.92 16 7 C 0.08 1.21 11.50 -16.98 -0.20 1.02 16 8 C -0.28 -4.57 6.13 -105.06 -0.64 -5.22 16 9 C 0.58 11.48 6.38 -12.52 -0.08 11.40 16 10 O -0.55 -12.20 11.95 5.27 0.06 -12.14 16 11 N -0.70 -14.57 5.01 -56.01 -0.28 -14.85 16 12 C 0.27 6.78 2.24 -69.08 -0.15 6.63 16 13 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.62 11.30 55.43 0.63 -24.00 16 18 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 23 C -0.14 -3.01 8.51 37.15 0.32 -2.69 16 24 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.11 1.61 6.78 -51.93 -0.35 1.26 16 29 H 0.19 2.24 7.50 -52.49 -0.39 1.85 16 30 H 0.39 7.01 7.49 -40.82 -0.31 6.70 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.31 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 35 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -30.58 298.03 -7.27 -37.85 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.16 Total: 7.68 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.63 Total: -5.28 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.98 Total: -48.14 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.58 -7.27 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273884925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.533 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds