Wall clock time and date at job start Sun Mar 29 2020 23:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30503 * 125.65096 * 2 1 4 4 C 1.34123 * 109.25667 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02311 * 359.73401 * 4 3 2 6 6 N 1.35045 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46491 * 126.39721 * 359.96235 * 6 2 1 8 8 C 1.53003 * 109.47253 * 280.33201 * 7 6 2 9 9 H 1.09004 * 109.47015 * 54.87429 * 8 7 6 10 10 C 1.53000 * 109.46881 * 294.87506 * 8 7 6 11 11 C 1.53001 * 109.47494 * 174.87536 * 8 7 6 12 12 N 1.46493 * 109.47213 * 185.00070 * 11 8 7 13 13 C 1.34784 * 119.99686 * 179.72724 * 12 11 8 14 14 O 1.21684 * 120.00091 * 0.26790 * 13 12 11 15 15 C 1.46376 * 119.99627 * 180.27618 * 13 12 11 16 16 H 1.07997 * 120.00095 * 359.97438 * 15 13 12 17 17 C 1.40051 * 119.99741 * 179.97438 * 15 13 12 18 18 N 1.30673 * 119.99976 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99864 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47287 * 89.99506 * 19 17 15 21 21 H 1.48504 * 109.46663 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.46802 * 329.99264 * 19 17 15 23 23 H 1.08999 * 109.46814 * 264.31304 * 1 2 3 24 24 H 1.08997 * 109.46961 * 24.30654 * 1 2 3 25 25 H 1.08996 * 109.47207 * 144.31286 * 1 2 3 26 26 H 1.08002 * 125.98984 * 180.02562 * 4 3 2 27 27 H 1.07999 * 126.59646 * 180.28942 * 5 4 3 28 28 H 1.09002 * 109.47186 * 160.33091 * 7 6 2 29 29 H 1.08996 * 109.47564 * 40.32881 * 7 6 2 30 30 H 1.09002 * 109.47053 * 177.97803 * 10 8 7 31 31 H 1.09002 * 109.47227 * 297.97265 * 10 8 7 32 32 H 1.09002 * 109.47443 * 57.98023 * 10 8 7 33 33 H 1.09000 * 109.47110 * 64.99780 * 11 8 7 34 34 H 1.09002 * 109.46855 * 305.00572 * 11 8 7 35 35 H 0.96995 * 120.00095 * 359.97438 * 12 11 8 36 36 H 0.96998 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0050 6 7 2.2941 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.4399 -2.8965 1.4190 9 1 0.6959 -2.1967 1.7996 10 6 2.6726 -2.8732 2.3250 11 6 0.8491 -4.3077 1.3980 12 7 0.3547 -4.6499 2.7339 13 6 -0.2166 -5.8508 2.9538 14 8 -0.3172 -6.6524 2.0439 15 6 -0.7160 -6.1904 4.2871 16 1 -0.6264 -5.4790 5.0947 17 6 -1.3101 -7.4380 4.5155 18 7 -1.4189 -8.2985 3.5382 19 14 -1.9482 -7.8712 6.2169 20 1 -3.3676 -7.4514 6.3349 21 1 -1.8467 -9.3381 6.4248 22 1 -1.1371 -7.1685 7.2433 23 1 -0.3633 -0.1018 1.0226 24 1 -0.3633 0.9366 -0.4230 25 1 -0.3633 -0.8346 -0.5995 26 1 4.4098 1.3411 -0.0003 27 1 4.4776 -1.2832 0.0105 28 1 2.6509 -3.1349 -0.3467 29 1 0.9849 -2.5952 -0.6649 30 1 2.3796 -3.1272 3.3437 31 1 3.4019 -3.5989 1.9651 32 1 3.1145 -1.8768 2.3118 33 1 1.6195 -5.0198 1.1022 34 1 0.0256 -4.3462 0.6849 35 1 0.4352 -4.0110 3.4592 36 1 -1.8307 -9.1624 3.6963 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274673200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:19 Heat of formation + Delta-G solvation = 6.304463 kcal Electronic energy + Delta-G solvation = -18072.081478 eV Core-core repulsion = 15170.793029 eV Total energy + Delta-G solvation = -2901.288449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.15647 -37.86908 -36.16104 -33.37547 -32.43432 -31.78520 -30.97769 -27.29576 -26.98634 -26.43086 -24.70540 -21.41702 -20.84881 -19.75641 -19.43796 -17.32284 -17.03448 -15.73536 -15.36528 -15.22884 -14.49777 -14.25580 -14.11317 -13.71434 -13.46082 -13.08401 -12.91459 -12.73428 -12.53335 -12.38727 -12.26527 -11.67347 -11.51108 -11.14188 -11.08124 -10.78832 -10.71199 -10.49555 -10.26105 -9.98374 -9.58845 -8.89594 -8.36723 -7.68598 -7.58951 -6.23551 -4.69181 2.01677 2.73414 3.11133 3.12197 3.18222 3.21449 4.06329 4.42607 4.48041 4.53786 4.57898 4.73193 4.99662 5.10798 5.18596 5.23653 5.34518 5.41685 5.47971 5.53803 5.71948 5.74072 5.80306 5.90349 5.97354 6.20309 6.27425 6.36525 6.44791 6.73656 7.15952 7.38891 7.85570 8.01759 8.08830 8.27088 8.97921 9.45903 10.54591 10.72763 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045030 B = 0.003932 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.656797 B = 7119.052480 C = 7156.545393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.206 3.794 3 N -0.498 5.498 4 C -0.035 4.035 5 C -0.056 4.056 6 N -0.447 5.447 7 C 0.108 3.892 8 C -0.116 4.116 9 H 0.080 0.920 10 C -0.145 4.145 11 C 0.142 3.858 12 N -0.766 5.766 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.380 0.620 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 12.763 -4.868 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 N -0.217 5.217 4 C -0.183 4.183 5 C -0.189 4.189 6 N -0.129 5.129 7 C -0.014 4.014 8 C -0.136 4.136 9 H 0.098 0.902 10 C -0.203 4.203 11 C 0.016 3.984 12 N -0.422 5.422 13 C 0.358 3.642 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.212 0.788 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.268 12.622 -5.634 15.177 hybrid contribution 0.232 -0.796 1.198 1.456 sum 6.500 11.827 -4.436 14.206 Atomic orbital electron populations 1.20208 0.85105 1.04024 1.03542 1.23277 0.95714 0.81434 1.05241 1.70233 1.02263 1.28441 1.20781 1.22228 0.94769 0.92783 1.08502 1.22678 0.87195 0.96761 1.12264 1.45445 1.06389 1.07489 1.53606 1.21962 1.01945 0.78862 0.98680 1.21740 0.98932 0.98817 0.94072 0.90167 1.21819 0.96901 1.01241 1.00290 1.20767 0.97558 0.91659 0.88412 1.46117 1.67406 1.19690 1.08986 1.18223 0.77192 0.78930 0.89834 1.90599 1.60729 1.49093 1.46013 1.20881 1.41369 1.01414 0.94623 0.91458 1.25706 0.94019 0.95709 0.97778 1.70017 1.32241 1.05695 1.31711 0.86371 0.79617 0.78027 0.82739 1.19712 1.20434 1.18915 0.90115 0.89371 0.90709 0.81653 0.81172 0.88562 0.88768 0.91634 0.92463 0.92940 0.93100 0.93178 0.78819 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.13 36.01 0.36 -0.33 16 2 C 0.21 2.60 7.89 -155.41 -1.23 1.38 16 3 N -0.50 -7.11 11.25 -10.81 -0.12 -7.24 16 4 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 5 C -0.06 -0.61 10.57 -16.56 -0.17 -0.79 16 6 N -0.45 -5.15 2.38 -113.91 -0.27 -5.42 16 7 C 0.11 1.14 5.24 -4.04 -0.02 1.12 16 8 C -0.12 -1.45 2.62 -90.62 -0.24 -1.69 16 9 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 10 C -0.15 -1.79 8.89 37.16 0.33 -1.46 16 11 C 0.14 2.44 5.06 -4.04 -0.02 2.42 16 12 N -0.77 -16.18 5.30 -61.72 -0.33 -16.51 16 13 C 0.55 15.36 7.75 -12.98 -0.10 15.26 16 14 O -0.58 -18.44 15.02 5.20 0.08 -18.36 16 15 C -0.55 -15.15 9.54 -35.63 -0.34 -15.49 16 16 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.41 5.50 -17.36 -0.10 2.32 16 18 N -0.77 -22.75 11.83 55.55 0.66 -22.09 16 19 Si 0.91 19.84 29.56 -169.99 -5.02 14.82 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 26 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.09 0.91 7.51 -51.93 -0.39 0.52 16 30 H 0.06 0.87 7.23 -51.93 -0.38 0.50 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.38 7.12 7.64 -40.82 -0.31 6.81 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -35.26 307.68 -7.28 -42.53 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.17 Total: 5.51 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.73 Total: 2.10 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.06 Total: -51.25 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.08 Total: -18.36 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.26 -7.28 -42.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274673200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.839 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds