Wall clock time and date at job start Sun Mar 29 2020 23:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30503 * 125.65096 * 2 1 4 4 C 1.34123 * 109.25667 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02311 * 359.73401 * 4 3 2 6 6 N 1.35045 * 125.64935 * 180.02562 * 2 1 3 7 7 C 1.46491 * 126.39721 * 359.96235 * 6 2 1 8 8 C 1.53003 * 109.47253 * 280.33201 * 7 6 2 9 9 H 1.09004 * 109.47015 * 54.87429 * 8 7 6 10 10 C 1.53000 * 109.46881 * 294.87506 * 8 7 6 11 11 C 1.53001 * 109.47494 * 174.87536 * 8 7 6 12 12 N 1.46493 * 109.47213 * 185.00070 * 11 8 7 13 13 C 1.34784 * 119.99686 * 179.72724 * 12 11 8 14 14 O 1.21684 * 120.00091 * 0.26790 * 13 12 11 15 15 C 1.46376 * 119.99627 * 180.27618 * 13 12 11 16 16 H 1.07997 * 120.00095 * 359.97438 * 15 13 12 17 17 C 1.40051 * 119.99741 * 179.97438 * 15 13 12 18 18 N 1.30673 * 119.99976 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99864 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47287 * 89.99506 * 19 17 15 21 21 H 1.48504 * 109.46663 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.46802 * 329.99264 * 19 17 15 23 23 H 1.08999 * 109.46814 * 264.31304 * 1 2 3 24 24 H 1.08997 * 109.46961 * 24.30654 * 1 2 3 25 25 H 1.08996 * 109.47207 * 144.31286 * 1 2 3 26 26 H 1.08002 * 125.98984 * 180.02562 * 4 3 2 27 27 H 1.07999 * 126.59646 * 180.28942 * 5 4 3 28 28 H 1.09002 * 109.47186 * 160.33091 * 7 6 2 29 29 H 1.08996 * 109.47564 * 40.32881 * 7 6 2 30 30 H 1.09002 * 109.47053 * 177.97803 * 10 8 7 31 31 H 1.09002 * 109.47227 * 297.97265 * 10 8 7 32 32 H 1.09002 * 109.47443 * 57.98023 * 10 8 7 33 33 H 1.09000 * 109.47110 * 64.99780 * 11 8 7 34 34 H 1.09002 * 109.46855 * 305.00572 * 11 8 7 35 35 H 0.96995 * 120.00095 * 359.97438 * 12 11 8 36 36 H 0.96998 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0050 6 7 2.2941 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.4399 -2.8965 1.4190 9 1 0.6959 -2.1967 1.7996 10 6 2.6726 -2.8732 2.3250 11 6 0.8491 -4.3077 1.3980 12 7 0.3547 -4.6499 2.7339 13 6 -0.2166 -5.8508 2.9538 14 8 -0.3172 -6.6524 2.0439 15 6 -0.7160 -6.1904 4.2871 16 1 -0.6264 -5.4790 5.0947 17 6 -1.3101 -7.4380 4.5155 18 7 -1.4189 -8.2985 3.5382 19 14 -1.9482 -7.8712 6.2169 20 1 -3.3676 -7.4514 6.3349 21 1 -1.8467 -9.3381 6.4248 22 1 -1.1371 -7.1685 7.2433 23 1 -0.3633 -0.1018 1.0226 24 1 -0.3633 0.9366 -0.4230 25 1 -0.3633 -0.8346 -0.5995 26 1 4.4098 1.3411 -0.0003 27 1 4.4776 -1.2832 0.0105 28 1 2.6509 -3.1349 -0.3467 29 1 0.9849 -2.5952 -0.6649 30 1 2.3796 -3.1272 3.3437 31 1 3.4019 -3.5989 1.9651 32 1 3.1145 -1.8768 2.3118 33 1 1.6195 -5.0198 1.1022 34 1 0.0256 -4.3462 0.6849 35 1 0.4352 -4.0110 3.4592 36 1 -1.8307 -9.1624 3.6963 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274673200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:18 Heat of formation + Delta-G solvation = -17.622756 kcal Electronic energy + Delta-G solvation = -18073.119040 eV Core-core repulsion = 15170.793029 eV Total energy + Delta-G solvation = -2902.326011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.04527 -39.62078 -37.62260 -34.93406 -34.37560 -32.60126 -32.40926 -28.83915 -28.17363 -27.45790 -26.19742 -22.30239 -22.18606 -21.48308 -20.42086 -19.19687 -17.97417 -17.47947 -16.63805 -16.42036 -16.00585 -15.83710 -15.30589 -14.85979 -14.62513 -14.33102 -14.23348 -13.90500 -13.57995 -13.47738 -13.23060 -13.14100 -13.05532 -12.73079 -12.62082 -12.44490 -12.04546 -11.97456 -11.89739 -10.93147 -10.91849 -10.54845 -9.87306 -9.47241 -9.23748 -8.29425 -6.85390 1.13622 1.40968 1.41802 1.57030 1.85194 2.20919 2.25139 2.47535 3.11119 3.57742 3.64108 3.66739 3.75105 3.88375 4.05835 4.20751 4.33001 4.48442 4.55056 4.62060 4.71936 4.76468 4.84632 4.90054 4.92778 5.02121 5.16336 5.23890 5.32191 5.45019 5.87544 5.89085 6.22758 6.25608 6.30972 6.87327 7.19344 7.53424 8.49017 8.67245 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045030 B = 0.003932 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.656797 B = 7119.052480 C = 7156.545393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.191 3.809 3 N -0.533 5.533 4 C -0.056 4.056 5 C -0.051 4.051 6 N -0.447 5.447 7 C 0.113 3.887 8 C -0.098 4.098 9 H 0.081 0.919 10 C -0.140 4.140 11 C 0.144 3.856 12 N -0.753 5.753 13 C 0.538 3.462 14 O -0.632 6.632 15 C -0.575 4.575 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.821 5.821 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.250 1.250 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.183 0.817 27 H 0.199 0.801 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.394 0.606 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 13.426 -3.799 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 N -0.253 5.253 4 C -0.203 4.203 5 C -0.184 4.184 6 N -0.130 5.130 7 C -0.010 4.010 8 C -0.117 4.117 9 H 0.100 0.900 10 C -0.198 4.198 11 C 0.019 3.981 12 N -0.408 5.408 13 C 0.342 3.658 14 O -0.519 6.519 15 C -0.612 4.612 16 H 0.104 0.896 17 C -0.185 4.185 18 N -0.451 5.451 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.173 1.173 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.200 0.800 27 H 0.216 0.784 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.227 0.773 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.668 13.354 -4.562 15.608 hybrid contribution 0.172 -0.935 0.811 1.250 sum 6.840 12.418 -3.751 14.666 Atomic orbital electron populations 1.20296 0.83737 1.04839 1.04003 1.23720 0.96706 0.81528 1.05162 1.70211 1.03472 1.29663 1.21984 1.22652 0.94735 0.93892 1.09032 1.23138 0.87733 0.96758 1.10758 1.45488 1.06575 1.07409 1.53478 1.21939 1.03131 0.78710 0.97216 1.21517 0.98837 0.95529 0.95847 0.90024 1.21770 0.96734 1.01801 0.99464 1.20857 0.97012 0.94288 0.85970 1.45759 1.65855 1.18076 1.11073 1.18554 0.77383 0.80158 0.89672 1.90554 1.62834 1.51190 1.47329 1.21440 1.41831 1.02522 0.95363 0.89606 1.26933 0.93606 0.95196 1.02778 1.70177 1.33483 1.06506 1.34909 0.85046 0.79183 0.77898 0.76345 1.18652 1.19854 1.17340 0.89829 0.88949 0.89473 0.80006 0.78448 0.86935 0.87676 0.92780 0.92034 0.92101 0.94160 0.94045 0.77263 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.13 71.24 0.72 -0.57 16 2 C 0.19 4.56 7.89 138.13 1.09 5.65 16 3 N -0.53 -14.71 11.25 -188.13 -2.12 -16.83 16 4 C -0.06 -1.28 11.87 83.53 0.99 -0.29 16 5 C -0.05 -1.00 10.57 83.09 0.88 -0.12 16 6 N -0.45 -9.32 2.38 -514.29 -1.23 -10.55 16 7 C 0.11 2.11 5.24 86.38 0.45 2.56 16 8 C -0.10 -2.28 2.62 -10.79 -0.03 -2.30 16 9 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 10 C -0.14 -3.18 8.89 71.98 0.64 -2.54 16 11 C 0.14 4.87 5.06 86.38 0.44 5.31 16 12 N -0.75 -31.65 5.30 -467.41 -2.48 -34.13 16 13 C 0.54 30.27 7.75 86.36 0.67 30.94 16 14 O -0.63 -41.24 15.02 -4.30 -0.06 -41.31 16 15 C -0.57 -31.90 9.54 24.83 0.24 -31.67 16 16 H 0.09 4.27 7.85 -2.91 -0.02 4.25 16 17 C 0.03 1.65 5.50 85.31 0.47 2.12 16 18 N -0.82 -49.55 11.83 21.84 0.26 -49.29 16 19 Si 1.00 40.21 29.56 68.60 2.03 42.24 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 1.34 7.48 -2.39 -0.02 1.33 16 26 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 27 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.11 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.11 1.78 7.51 -2.39 -0.02 1.76 16 30 H 0.05 1.35 7.23 -2.39 -0.02 1.33 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.30 6.89 -2.39 -0.02 1.28 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.39 14.39 7.64 -92.71 -0.71 13.68 16 36 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 Total: -1.00 -77.60 307.68 3.33 -74.27 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.37 Total: 26.49 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.56 Total: 9.10 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -5.56 Total: -110.79 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.06 Total: -41.31 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -77.60 3.33 -74.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274673200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.648 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds