Wall clock time and date at job start Sun Mar 29 2020 23:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30507 * 125.65182 * 2 1 4 4 C 1.34123 * 109.25636 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02361 * 359.72652 * 4 3 2 6 6 N 1.35051 * 125.65551 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.39021 * 359.96681 * 6 2 1 8 8 C 1.53006 * 109.47281 * 84.99520 * 7 6 2 9 9 H 1.08993 * 109.47043 * 305.00358 * 8 7 6 10 10 C 1.53007 * 109.46695 * 64.99896 * 8 7 6 11 11 C 1.52997 * 109.47195 * 184.99397 * 8 7 6 12 12 N 1.46498 * 109.47027 * 174.99987 * 11 8 7 13 13 C 1.34783 * 119.99949 * 180.02562 * 12 11 8 14 14 O 1.21689 * 119.99668 * 0.02562 * 13 12 11 15 15 C 1.46378 * 119.99766 * 180.02562 * 13 12 11 16 16 H 1.07996 * 120.00107 * 353.94296 * 15 13 12 17 17 C 1.40045 * 119.99804 * 173.94284 * 15 13 12 18 18 N 1.30672 * 120.00076 * 6.14730 * 17 15 13 19 19 Si 1.86801 * 120.00133 * 186.15220 * 17 15 13 20 20 H 1.48493 * 109.47433 * 94.98088 * 19 17 15 21 21 H 1.48500 * 109.47192 * 214.98404 * 19 17 15 22 22 H 1.48498 * 109.46656 * 334.98044 * 19 17 15 23 23 H 1.09002 * 109.46620 * 269.95824 * 1 2 3 24 24 H 1.08991 * 109.47209 * 29.96017 * 1 2 3 25 25 H 1.08998 * 109.46842 * 149.96358 * 1 2 3 26 26 H 1.07999 * 125.98687 * 180.02562 * 4 3 2 27 27 H 1.08000 * 126.59011 * 180.28347 * 5 4 3 28 28 H 1.09007 * 109.47308 * 324.99640 * 7 6 2 29 29 H 1.08998 * 109.47150 * 205.00000 * 7 6 2 30 30 H 1.08998 * 109.46610 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.46891 * 299.99860 * 10 8 7 32 32 H 1.09003 * 109.46864 * 59.99883 * 10 8 7 33 33 H 1.09002 * 109.46620 * 55.00630 * 11 8 7 34 34 H 1.09000 * 109.47770 * 295.00563 * 11 8 7 35 35 H 0.96999 * 120.00293 * 0.02562 * 12 11 8 36 36 H 0.97001 * 120.00206 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0052 6 7 2.2942 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5650 -2.9373 -1.4374 9 1 0.8563 -2.2508 -1.9005 10 6 2.8716 -2.9352 -2.2334 11 6 0.9758 -4.3492 -1.4281 12 7 0.5994 -4.7302 -2.7917 13 6 0.0550 -5.9405 -3.0272 14 8 -0.1242 -6.7165 -2.1072 15 6 -0.3205 -6.3214 -4.3898 16 1 -0.2532 -5.5996 -5.1903 17 6 -0.7672 -7.6219 -4.6553 18 7 -0.9635 -8.4590 -3.6714 19 14 -1.0823 -8.1599 -6.4162 20 1 0.1231 -8.8453 -6.9476 21 1 -2.2373 -9.0927 -6.4497 22 1 -1.3832 -6.9694 -7.2512 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8897 -0.5144 26 1 4.4098 1.3411 -0.0003 27 1 4.4777 -1.2832 0.0106 28 1 0.9300 -2.5773 0.5895 29 1 2.6168 -3.1238 0.4334 30 1 2.6738 -3.2526 -3.2572 31 1 3.2914 -1.9293 -2.2400 32 1 3.5804 -3.6216 -1.7702 33 1 0.0935 -4.3705 -0.7883 34 1 1.7182 -5.0503 -1.0467 35 1 0.7419 -4.1115 -3.5250 36 1 -1.2732 -9.3597 -3.8553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274673201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:23 Heat of formation + Delta-G solvation = 6.237766 kcal Electronic energy + Delta-G solvation = -18059.804285 eV Core-core repulsion = 15158.512943 eV Total energy + Delta-G solvation = -2901.291341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.15785 -37.87455 -36.16525 -33.37620 -32.43993 -31.79279 -30.97725 -27.31806 -26.98071 -26.42461 -24.70654 -21.40435 -20.83802 -19.77010 -19.46658 -17.32596 -17.03024 -15.69087 -15.39503 -15.25518 -14.50191 -14.24223 -14.12125 -13.70915 -13.47610 -13.08634 -12.90209 -12.71753 -12.56196 -12.39478 -12.26802 -11.68348 -11.50271 -11.15594 -11.08654 -10.79123 -10.72527 -10.48590 -10.25599 -9.98287 -9.59230 -8.89451 -8.36431 -7.68585 -7.59397 -6.24678 -4.68939 2.01251 2.73261 3.10729 3.11916 3.18270 3.21636 4.06264 4.42801 4.48160 4.54487 4.56725 4.73088 4.97855 5.12541 5.16643 5.25022 5.34351 5.42094 5.45634 5.53801 5.71450 5.73259 5.79857 5.90241 5.96795 6.20403 6.27049 6.36379 6.44133 6.73760 7.15886 7.39084 7.85360 8.01407 8.08581 8.27307 8.97856 9.45483 10.54042 10.72171 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045121 B = 0.003915 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.403623 B = 7150.544693 C = 7182.654068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.205 3.795 3 N -0.497 5.497 4 C -0.035 4.035 5 C -0.055 4.055 6 N -0.447 5.447 7 C 0.108 3.892 8 C -0.116 4.116 9 H 0.080 0.920 10 C -0.146 4.146 11 C 0.142 3.858 12 N -0.766 5.766 13 C 0.554 3.446 14 O -0.582 6.582 15 C -0.547 4.547 16 H 0.068 0.932 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.380 0.620 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 12.917 5.110 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 N -0.217 5.217 4 C -0.183 4.183 5 C -0.188 4.188 6 N -0.129 5.129 7 C -0.015 4.015 8 C -0.136 4.136 9 H 0.098 0.902 10 C -0.203 4.203 11 C 0.016 3.984 12 N -0.422 5.422 13 C 0.358 3.642 14 O -0.465 6.465 15 C -0.584 4.584 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.212 0.788 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.766 12.799 5.876 15.218 hybrid contribution 0.444 -0.864 -1.216 1.556 sum 6.210 11.935 4.660 14.238 Atomic orbital electron populations 1.20217 0.85120 1.04243 1.03421 1.23288 0.95706 0.81437 1.05303 1.70226 1.02272 1.28453 1.20748 1.22228 0.94760 0.92787 1.08538 1.22669 0.87222 0.96743 1.12157 1.45442 1.06393 1.07475 1.53628 1.21971 1.02149 0.78805 0.98553 1.21748 0.98942 0.98624 0.94266 0.90206 1.21834 0.96203 1.01280 1.01003 1.20768 0.98298 0.91460 0.87901 1.46125 1.70096 1.19689 1.06286 1.18230 0.76921 0.78734 0.90272 1.90599 1.58669 1.51016 1.46177 1.20881 1.46970 0.97532 0.92981 0.91412 1.25701 0.93022 0.96302 0.98150 1.70023 1.32447 1.05163 1.31996 0.86361 0.78373 0.79065 0.82982 1.19795 1.20417 1.18874 0.90322 0.89310 0.90478 0.81653 0.81172 0.88662 0.88601 0.91571 0.92866 0.92487 0.93176 0.93073 0.78802 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.04 36.00 0.36 -0.33 16 2 C 0.20 2.59 7.90 -155.40 -1.23 1.36 16 3 N -0.50 -7.11 11.25 -10.81 -0.12 -7.23 16 4 C -0.04 -0.43 11.87 -17.81 -0.21 -0.64 16 5 C -0.05 -0.60 10.28 -16.56 -0.17 -0.77 16 6 N -0.45 -5.15 2.47 -113.90 -0.28 -5.43 16 7 C 0.11 1.13 5.08 -4.04 -0.02 1.11 16 8 C -0.12 -1.46 2.63 -90.61 -0.24 -1.69 16 9 H 0.08 1.03 7.74 -51.93 -0.40 0.62 16 10 C -0.15 -1.79 8.82 37.16 0.33 -1.46 16 11 C 0.14 2.43 5.06 -4.04 -0.02 2.41 16 12 N -0.77 -16.18 5.28 -61.72 -0.33 -16.50 16 13 C 0.55 15.36 7.74 -12.98 -0.10 15.26 16 14 O -0.58 -18.44 15.05 5.20 0.08 -18.36 16 15 C -0.55 -15.17 9.53 -35.63 -0.34 -15.51 16 16 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 18 N -0.77 -22.73 11.85 55.55 0.66 -22.07 16 19 Si 0.91 19.85 29.56 -169.99 -5.03 14.82 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.70 7.43 -51.93 -0.39 0.32 16 26 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.10 0.91 7.92 -51.93 -0.41 0.50 16 29 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 0.88 7.18 -51.93 -0.37 0.51 16 31 H 0.05 0.63 6.77 -51.93 -0.35 0.28 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.38 7.13 7.63 -40.82 -0.31 6.81 16 36 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -35.26 307.01 -7.29 -42.55 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.16 Total: 5.53 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.74 Total: 2.07 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.07 Total: -51.23 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.08 Total: -18.36 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.26 -7.29 -42.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274673201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.785 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds