Wall clock time and date at job start Sun Mar 29 2020 23:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30507 * 125.65182 * 2 1 4 4 C 1.34123 * 109.25636 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02361 * 359.72652 * 4 3 2 6 6 N 1.35051 * 125.65551 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.39021 * 359.96681 * 6 2 1 8 8 C 1.53006 * 109.47281 * 84.99520 * 7 6 2 9 9 H 1.08993 * 109.47043 * 305.00358 * 8 7 6 10 10 C 1.53007 * 109.46695 * 64.99896 * 8 7 6 11 11 C 1.52997 * 109.47195 * 184.99397 * 8 7 6 12 12 N 1.46498 * 109.47027 * 174.99987 * 11 8 7 13 13 C 1.34783 * 119.99949 * 180.02562 * 12 11 8 14 14 O 1.21689 * 119.99668 * 0.02562 * 13 12 11 15 15 C 1.46378 * 119.99766 * 180.02562 * 13 12 11 16 16 H 1.07996 * 120.00107 * 353.94296 * 15 13 12 17 17 C 1.40045 * 119.99804 * 173.94284 * 15 13 12 18 18 N 1.30672 * 120.00076 * 6.14730 * 17 15 13 19 19 Si 1.86801 * 120.00133 * 186.15220 * 17 15 13 20 20 H 1.48493 * 109.47433 * 94.98088 * 19 17 15 21 21 H 1.48500 * 109.47192 * 214.98404 * 19 17 15 22 22 H 1.48498 * 109.46656 * 334.98044 * 19 17 15 23 23 H 1.09002 * 109.46620 * 269.95824 * 1 2 3 24 24 H 1.08991 * 109.47209 * 29.96017 * 1 2 3 25 25 H 1.08998 * 109.46842 * 149.96358 * 1 2 3 26 26 H 1.07999 * 125.98687 * 180.02562 * 4 3 2 27 27 H 1.08000 * 126.59011 * 180.28347 * 5 4 3 28 28 H 1.09007 * 109.47308 * 324.99640 * 7 6 2 29 29 H 1.08998 * 109.47150 * 205.00000 * 7 6 2 30 30 H 1.08998 * 109.46610 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.46891 * 299.99860 * 10 8 7 32 32 H 1.09003 * 109.46864 * 59.99883 * 10 8 7 33 33 H 1.09002 * 109.46620 * 55.00630 * 11 8 7 34 34 H 1.09000 * 109.47770 * 295.00563 * 11 8 7 35 35 H 0.96999 * 120.00293 * 0.02562 * 12 11 8 36 36 H 0.97001 * 120.00206 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0052 6 7 2.2942 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5650 -2.9373 -1.4374 9 1 0.8563 -2.2508 -1.9005 10 6 2.8716 -2.9352 -2.2334 11 6 0.9758 -4.3492 -1.4281 12 7 0.5994 -4.7302 -2.7917 13 6 0.0550 -5.9405 -3.0272 14 8 -0.1242 -6.7165 -2.1072 15 6 -0.3205 -6.3214 -4.3898 16 1 -0.2532 -5.5996 -5.1903 17 6 -0.7672 -7.6219 -4.6553 18 7 -0.9635 -8.4590 -3.6714 19 14 -1.0823 -8.1599 -6.4162 20 1 0.1231 -8.8453 -6.9476 21 1 -2.2373 -9.0927 -6.4497 22 1 -1.3832 -6.9694 -7.2512 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8897 -0.5144 26 1 4.4098 1.3411 -0.0003 27 1 4.4777 -1.2832 0.0106 28 1 0.9300 -2.5773 0.5895 29 1 2.6168 -3.1238 0.4334 30 1 2.6738 -3.2526 -3.2572 31 1 3.2914 -1.9293 -2.2400 32 1 3.5804 -3.6216 -1.7702 33 1 0.0935 -4.3705 -0.7883 34 1 1.7182 -5.0503 -1.0467 35 1 0.7419 -4.1115 -3.5250 36 1 -1.2732 -9.3597 -3.8553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274673201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:22 Heat of formation + Delta-G solvation = -17.759351 kcal Electronic energy + Delta-G solvation = -18060.844878 eV Core-core repulsion = 15158.512943 eV Total energy + Delta-G solvation = -2902.331934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.04669 -39.62564 -37.62742 -34.93635 -34.38137 -32.60692 -32.40659 -28.84110 -28.19020 -27.44489 -26.19901 -22.29100 -22.17827 -21.48725 -20.45117 -19.20493 -17.97076 -17.47969 -16.58404 -16.46705 -16.01561 -15.84348 -15.30880 -14.86881 -14.62074 -14.32372 -14.25004 -13.90649 -13.56097 -13.45206 -13.24623 -13.15529 -13.07532 -12.76469 -12.60301 -12.42956 -12.04388 -11.96898 -11.90232 -10.93469 -10.91793 -10.55342 -9.87308 -9.47705 -9.23352 -8.30585 -6.85170 1.13222 1.40830 1.41186 1.57200 1.84984 2.20736 2.24939 2.47141 3.11017 3.56923 3.63942 3.66406 3.75623 3.88622 4.02748 4.20257 4.33391 4.49099 4.56551 4.63029 4.70818 4.76131 4.84731 4.89409 4.92584 5.02604 5.16425 5.24408 5.32401 5.44273 5.87400 5.89066 6.22384 6.25540 6.30849 6.87195 7.19080 7.52900 8.48443 8.66660 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.045121 B = 0.003915 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.403623 B = 7150.544693 C = 7182.654068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.191 3.809 3 N -0.533 5.533 4 C -0.056 4.056 5 C -0.050 4.050 6 N -0.448 5.448 7 C 0.113 3.887 8 C -0.098 4.098 9 H 0.080 0.920 10 C -0.141 4.141 11 C 0.144 3.856 12 N -0.753 5.753 13 C 0.539 3.461 14 O -0.632 6.632 15 C -0.576 4.576 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.821 5.821 19 Si 0.996 3.004 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.249 1.249 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.183 0.817 27 H 0.198 0.802 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.394 0.606 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 13.542 4.049 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 N -0.253 5.253 4 C -0.203 4.203 5 C -0.183 4.183 6 N -0.130 5.130 7 C -0.010 4.010 8 C -0.117 4.117 9 H 0.099 0.901 10 C -0.199 4.199 11 C 0.018 3.982 12 N -0.408 5.408 13 C 0.343 3.657 14 O -0.519 6.519 15 C -0.612 4.612 16 H 0.104 0.896 17 C -0.185 4.185 18 N -0.450 5.450 19 Si 0.815 3.185 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.173 1.173 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.200 0.800 27 H 0.215 0.785 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.227 0.773 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.341 13.493 4.813 15.666 hybrid contribution 0.313 -0.988 -0.828 1.326 sum 6.654 12.505 3.985 14.716 Atomic orbital electron populations 1.20300 0.83685 1.04554 1.04372 1.23749 0.96730 0.81515 1.05160 1.70206 1.03465 1.29665 1.21979 1.22651 0.94734 0.93884 1.09052 1.23118 0.87756 0.96736 1.10709 1.45484 1.06572 1.07403 1.53518 1.21946 1.03404 0.78620 0.97032 1.21524 0.98812 0.95338 0.96068 0.90149 1.21789 0.96014 1.01890 1.00176 1.20860 0.97878 0.94048 0.85377 1.45766 1.68434 1.18047 1.08511 1.18558 0.77048 0.80018 0.90118 1.90554 1.60840 1.53093 1.47448 1.21434 1.47399 0.98707 0.93687 0.89610 1.26928 0.91938 0.96024 1.03576 1.70179 1.33654 1.05925 1.35287 0.85035 0.78487 0.78954 0.76001 1.18855 1.19779 1.17251 0.89044 0.89151 0.89965 0.80016 0.78514 0.87569 0.87010 0.92798 0.91951 0.91944 0.94017 0.94146 0.77254 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.04 71.23 0.71 -0.57 16 2 C 0.19 4.54 7.90 138.12 1.09 5.64 16 3 N -0.53 -14.69 11.25 -188.13 -2.12 -16.80 16 4 C -0.06 -1.29 11.87 83.53 0.99 -0.29 16 5 C -0.05 -0.99 10.28 83.09 0.85 -0.13 16 6 N -0.45 -9.34 2.47 -514.27 -1.27 -10.61 16 7 C 0.11 2.11 5.08 86.38 0.44 2.55 16 8 C -0.10 -2.28 2.63 -10.79 -0.03 -2.31 16 9 H 0.08 1.91 7.74 -2.39 -0.02 1.89 16 10 C -0.14 -3.18 8.82 71.98 0.63 -2.55 16 11 C 0.14 4.86 5.06 86.38 0.44 5.30 16 12 N -0.75 -31.68 5.28 -467.40 -2.47 -34.14 16 13 C 0.54 30.30 7.74 86.36 0.67 30.97 16 14 O -0.63 -41.27 15.05 -4.31 -0.06 -41.33 16 15 C -0.58 -31.97 9.53 24.83 0.24 -31.73 16 16 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 17 C 0.03 1.68 5.49 85.30 0.47 2.15 16 18 N -0.82 -49.51 11.85 21.83 0.26 -49.26 16 19 Si 1.00 40.23 29.56 68.60 2.03 42.26 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 1.37 7.43 -2.39 -0.02 1.36 16 26 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.11 1.80 7.92 -2.38 -0.02 1.78 16 29 H 0.11 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.05 1.34 7.18 -2.39 -0.02 1.33 16 31 H 0.06 1.31 6.77 -2.39 -0.02 1.30 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.39 14.42 7.63 -92.71 -0.71 13.71 16 36 H 0.27 14.97 8.29 -92.71 -0.77 14.20 16 Total: -1.00 -77.59 307.01 3.25 -74.35 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.37 Total: 26.51 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.51 Total: 9.02 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.59 Total: -110.81 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.06 Total: -41.33 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -77.59 3.25 -74.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274673201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -77.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds